Literature DB >> 22123757

Draft genome sequence of Streptomyces sp. strain Wigar10, isolated from a surface-sterilized garlic bulb.

Jonathan L Klassen1, Sandye M Adams, Shanti Bramhacharya, Steven S Giles, Lynne A Goodwin, Tanja Woyke, Cameron R Currie.   

Abstract

Streptomyces sp. strain Wigar10 was isolated from a surface-sterilized garlic bulb (Allium sativum var. Purple Stripe). Its genome encodes several novel secondary metabolite biosynthetic gene clusters and provides a genetic basis for further investigation of this strain's chemical biology and potential for interaction with its garlic host.

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Year:  2011        PMID： 22123757      PMCID： PMC3232846          DOI： 10.1128/JB.06257-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

1.  Towards a genome-based taxonomy for prokaryotes.

Authors:  Konstantinos T Konstantinidis; James M Tiedje
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

2.  Impact of flooding on soil bacterial communities associated with poplar (Populus sp.) trees.

Authors:  Andrea Graff; Ralf Conrad
Journal:  FEMS Microbiol Ecol       Date:  2005-08-01       Impact factor: 4.194

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Genome sequence of Streptomyces griseus strain XylebKG-1, an ambrosia beetle-associated actinomycete.

Authors:  Kirk J Grubbs; Peter H W Biedermann; Garret Suen; Sandra M Adams; Joseph A Moeller; Jonathan L Klassen; Lynne A Goodwin; Tanja Woyke; A Christine Munk; David Bruce; Chris Detter; Roxanne Tapia; Cliff S Han; Cameron R Currie
Journal:  J Bacteriol       Date:  2011-04-01       Impact factor: 3.490

5.  The Pfam protein families database.

Authors:  Robert D Finn; Jaina Mistry; John Tate; Penny Coggill; Andreas Heger; Joanne E Pollington; O Luke Gavin; Prasad Gunasekaran; Goran Ceric; Kristoffer Forslund; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2009-11-17       Impact factor: 16.971

6.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

7.  Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350.

Authors:  Yasuo Ohnishi; Jun Ishikawa; Hirofumi Hara; Hirokazu Suzuki; Miwa Ikenoya; Haruo Ikeda; Atsushi Yamashita; Masahira Hattori; Sueharu Horinouchi
Journal:  J Bacteriol       Date:  2008-03-28       Impact factor: 3.490

8.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Authors:  Marnix H Medema; Kai Blin; Peter Cimermancic; Victor de Jager; Piotr Zakrzewski; Michael A Fischbach; Tilmann Weber; Eriko Takano; Rainer Breitling
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169
  10 in total
  3 in total

1.  Functional Characterization of a Ketoreductase-Encoding Gene med-ORF12 Involved in the Formation of a Stereospecific Pyran Ring during the Biosynthesis of an Antitumor Antibiotic Medermycin.

Authors:  Qiang He; Le Li; Tingting Yang; Ruijuan Li; Aiying Li
Journal:  PLoS One       Date:  2015-07-10       Impact factor: 3.240

2.  DoBISCUIT: a database of secondary metabolite biosynthetic gene clusters.

Authors:  Natsuko Ichikawa; Machi Sasagawa; Mika Yamamoto; Hisayuki Komaki; Yumi Yoshida; Shuji Yamazaki; Nobuyuki Fujita
Journal:  Nucleic Acids Res       Date:  2012-11-26       Impact factor: 16.971

3.  Comparative Genomics Analysis of Streptomyces Species Reveals Their Adaptation to the Marine Environment and Their Diversity at the Genomic Level.

Authors:  Xinpeng Tian; Zhewen Zhang; Tingting Yang; Meili Chen; Jie Li; Fei Chen; Jin Yang; Wenjie Li; Bing Zhang; Zhang Zhang; Jiayan Wu; Changsheng Zhang; Lijuan Long; Jingfa Xiao
Journal:  Front Microbiol       Date:  2016-06-27       Impact factor: 5.640
  3 in total

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