Literature DB >> 22123027

Using DNA methylation to understand biological consequences of genetic variability.

Dena G Hernandez1, Andrew B Singleton.   

Abstract

The advent of high-content genomic mapping technologies has provided numerous clues about the genetic architecture of complex disease and the tools with which to understand the biological framework resulting from this architecture. We believe that understanding and mapping epigenetic marks, in particular DNA methylation, which is suited to such assays, offers a timely opportunity in this context. Here, we make an argument for this work, describing this opportunity, the likely path ahead, and the problems and pitfalls associated with such work.
Copyright © 2011 S. Karger AG, Basel.

Mesh:

Year:  2011        PMID: 22123027      PMCID: PMC3304508          DOI: 10.1159/000333097

Source DB:  PubMed          Journal:  Neurodegener Dis        ISSN: 1660-2854            Impact factor:   2.977


  59 in total

1.  Genome-wide high throughput analysis of DNA methylation in eukaryotes.

Authors:  Kyle R Pomraning; Kristina M Smith; Michael Freitag
Journal:  Methods       Date:  2008-10-23       Impact factor: 3.608

2.  The active FMR1 promoter is associated with a large domain of altered chromatin conformation with embedded local histone modifications.

Authors:  Nele Gheldof; Tomoko M Tabuchi; Job Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-04       Impact factor: 11.205

3.  Neuronal nuclei isolation from human postmortem brain tissue.

Authors:  Anouch Matevossian; Schahram Akbarian
Journal:  J Vis Exp       Date:  2008-10-01       Impact factor: 1.355

4.  The MIRA method for DNA methylation analysis.

Authors:  Tibor A Rauch; Gerd P Pfeifer
Journal:  Methods Mol Biol       Date:  2009

5.  Cytosine methylation profiling of cancer cell lines.

Authors:  Mathias Ehrich; Julia Turner; Peter Gibbs; Lara Lipton; Mara Giovanneti; Charles Cantor; Dirk van den Boom
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-19       Impact factor: 11.205

6.  Different methylation of the TNF-alpha promoter in cortex and substantia nigra: Implications for selective neuronal vulnerability.

Authors:  Heike C Pieper; Bernd O Evert; Oliver Kaut; Peter F Riederer; Andreas Waha; Ullrich Wüllner
Journal:  Neurobiol Dis       Date:  2008-09-30       Impact factor: 5.996

7.  A genome-wide genotyping study in patients with ischaemic stroke: initial analysis and data release.

Authors:  Mar Matarín; W Mark Brown; Sonja Scholz; Javier Simón-Sánchez; Hon-Chung Fung; Dena Hernandez; J Raphael Gibbs; Fabienne Wavrant De Vrieze; Cynthia Crews; Angela Britton; Carl D Langefeld; Thomas G Brott; Robert D Brown; Bradford B Worrall; Michael Frankel; Scott Silliman; L Douglas Case; Andrew Singleton; John A Hardy; Stephen S Rich; James F Meschia
Journal:  Lancet Neurol       Date:  2007-05       Impact factor: 44.182

8.  Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters.

Authors:  Lanlan Shen; Yutaka Kondo; Yi Guo; Jiexin Zhang; Li Zhang; Saira Ahmed; Jingmin Shu; Xinli Chen; Robert A Waterland; Jean-Pierre J Issa
Journal:  PLoS Genet       Date:  2007-09-10       Impact factor: 5.917

9.  The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores.

Authors:  Rafael A Irizarry; Christine Ladd-Acosta; Andrew P Feinberg; Bo Wen; Zhijin Wu; Carolina Montano; Patrick Onyango; Hengmi Cui; Kevin Gabo; Michael Rongione; Maree Webster; Hong Ji; James Potash; Sarven Sabunciyan
Journal:  Nat Genet       Date:  2009-01-18       Impact factor: 38.330

10.  Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data.

Authors:  Jennifer C Schymick; Sonja W Scholz; Hon-Chung Fung; Angela Britton; Sampath Arepalli; J Raphael Gibbs; Federica Lombardo; Mar Matarin; Dalia Kasperaviciute; Dena G Hernandez; Cynthia Crews; Lucie Bruijn; Jeffrey Rothstein; Gabriele Mora; Gabriella Restagno; Adriano Chiò; Andrew Singleton; John Hardy; Bryan J Traynor
Journal:  Lancet Neurol       Date:  2007-04       Impact factor: 44.182

View more
  6 in total

1.  Effect of aging on 5-hydroxymethylcytosine in the mouse hippocampus.

Authors:  Hu Chen; Svetlana Dzitoyeva; Hari Manev
Journal:  Restor Neurol Neurosci       Date:  2012       Impact factor: 2.406

2.  Lithium reduces the effects of rotenone-induced complex I dysfunction on DNA methylation and hydroxymethylation in rat cortical primary neurons.

Authors:  Gustavo Scola; Helena K Kim; L Trevor Young; Mirian Salvador; Ana C Andreazza
Journal:  Psychopharmacology (Berl)       Date:  2014-04-29       Impact factor: 4.530

3.  Early pregnancy dyslipidemia is associated with placental DNA methylation at loci relevant for cardiometabolic diseases.

Authors:  Marion Ouidir; Xuehuo Zeng; Tsegaselassie Workalemahu; Deepika Shrestha; Katherine L Grantz; Pauline Mendola; Cuilin Zhang; Fasil Tekola-Ayele
Journal:  Epigenomics       Date:  2020-07-17       Impact factor: 4.778

Review 4.  A comprehensive view of the epigenetic landscape part I: DNA methylation, passive and active DNA demethylation pathways and histone variants.

Authors:  Anna Sadakierska-Chudy; Richard M Kostrzewa; Małgorzata Filip
Journal:  Neurotox Res       Date:  2014-11-02       Impact factor: 3.911

5.  Placental DNA methylation changes associated with maternal prepregnancy BMI and gestational weight gain.

Authors:  Deepika Shrestha; Marion Ouidir; Tsegaselassie Workalemahu; Xuehuo Zeng; Fasil Tekola-Ayele
Journal:  Int J Obes (Lond)       Date:  2020-02-18       Impact factor: 5.095

Review 6.  A symbiotic liaison between the genetic and epigenetic code.

Authors:  Holger Heyn
Journal:  Front Genet       Date:  2014-05-01       Impact factor: 4.599

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.