| Literature DB >> 22119922 |
Bernhard Roth1, Hannah Mohr, Martin Enders, Wolfgang Garten, Jens-Peter Gregersen.
Abstract
This paper summarizes results obtained by multiplex PCR screening of human clinical samples for respiratory viruses and corresponding data obtained after passaging of virus-positive samples in MDCK 33016PF cells. Using the ResPlexII v2.0 (Qiagen) multiplex PCR, 393 positive results were obtained in 468 clinical samples collected during an influenza season in Germany. The overall distribution of positive results was influenza A 42.0%, influenza B 38.7%, adenovirus 1.5%, bocavirus 0.5%, coronavirus 3.3%, enterovirus 5.6%, metapneumovirus 1.0%, parainfluenza virus 0.8%, rhinovirus 4.1%, and respiratory syncytial virus (RSV) 2.5%. Double infections of influenza virus together with another virus were found for adenovirus B and E, bocavirus, coronavirus, enterovirus and for rhinovirus. These other viruses were rapidly lost upon passages in MDCK 33016PF cells and under conditions as applied to influenza virus passaging. Clinical samples, in which no influenza virus but other viruses were found, were also subject to passages in MDCK 33016PF cells. Using lower inoculum dilutions than those normally applied for preparations containing influenza virus (total dilution of the original sample of ∼10(4)), the positive results for the different viruses turned negative already after 2 or 3 passages in MDCK 33016PF cells. These results demonstrate that, under practical conditions as applied to grow influenza viruses, contaminating viruses can be effectively removed by passages in MDCK cells. In combination with their superior isolation efficiency, MDCK cells appear highly suitable to be used as an alternative to embryonated eggs to isolate and propagate influenza vaccine candidate viruses.Entities:
Mesh:
Year: 2011 PMID: 22119922 PMCID: PMC7130813 DOI: 10.1016/j.vaccine.2011.11.063
Source DB: PubMed Journal: Vaccine ISSN: 0264-410X Impact factor: 3.641
ResPlex II v2.0 multiplex PCR target pathogens and target genes.
| Pathogen | Targeted gene |
|---|---|
| Respiratory syncytial virus A | Nonstructural protein (NS) |
| Respiratory syncytial virus B | Nonstructural protein (NS) |
| Influenza virus A | Nonstructural protein (NS) |
| Influenza virus B | Nonstructural protein (NS) |
| Parainfluenza virus 1 | Nucleocapsid protein (N) |
| Parainfluenza virus 2 | Nucleocapsid protein (N) |
| Parainfluenza virus 3 | Nucleocapsid protein (N) |
| Parainfluenza virus 4 | Nucleocapsid protein (N) |
| Human metapneumovirus | Fusion protein (F) |
| Rhinovirus | 5′ UTR |
| Enterovirus (Coxsackie virus, Echovirus) | 5′ UTR |
| Coronavirus OC43 | Nucleocapsid protein (N) |
| Coronavirus 229E | Nucleocapsid protein (N) |
| Coronavirus NL63 | Nucleocapsid protein (N) |
| Coronavirus HKU1 | Nucleocapsid phosphoprotein (N) |
| Bocavirus | Nonstructural protein (NS) |
| Adenovirus types 3, 7, and 21 | Hexon |
| Adenovirus type 4 | Hexon |
Confirmatory tests using independent, conventional PCR methods.
| Target virus | PCR method [Reference] | ResPlex results confirmed | Remark |
|---|---|---|---|
| Influenzavirus | 317/317 | ||
| Adenovirus | Euroclone Duplicα Real-time Adenovirus Kit | 6/6 | |
| RSV A, B | 10/10 | ||
| Enterovirus | Artus® Enterovirus LC RT-PCR Kit version 2 | 9/22 | Conserved 5′ UTR regions used for the ResPlex method are shared by both virus groups |
| Rhinovirus | 11/16 | ||
| Parainfluenza virus 3 | Novartis Vaccines & Diagnostics in-house realtime RT-PCR | 0/3 | From one sample no material was left for confirmatory test |
| Coronavirus NL 63 | 5/5 | Includes one questionable ResPlex result (sample 656 in | |
| Coronavirus OC 43 | 1/1 | ||
| Cornavirus 229E | 4/5 | Includes one questionable ResPlex result (sample 559 in | |
| Coronavirus HKU1 | 3/3 | ||
| Bocavirus | 3/3 | Includes one questionable ResPlex result (sample 750 in | |
| hMPV | 3/3 |
Number and distribution of virus positive results in human samples collected during the influenza season in spring 2008.
| Virus | Positive results | Percentage |
|---|---|---|
| Influenza A | 165 | 42.0% |
| Influenza B | 152 | 38.7% |
| Adenovirus | 6 | 1.5% |
| Bocavirus | 2 | 0.5% |
| Coronavirus | 13 | 3.3% |
| Enterovirus | 22 | 5.6% |
| HMPV | 4 | 1.0% |
| Parainfluenza virus | 3 | 0.8% |
| Rhinovirus | 16 | 4.1% |
| RSV | 10 | 2.5% |
| Total | 393 | 100.0% |
MDCK passages of field samples positive for influenza virus plus other viruses.
| Sample no. | Original clinical sample | 2nd passage MDCK 33016PF | 5th passage MDCK 33016PF | ||
|---|---|---|---|---|---|
| Viruses detected | Virus detected | Total sample dilution | Virus detected | Total sample dilution | |
| 500 | Influenza A, Enterovirus | Influenza A | 10−8 | Influenza A | 10−27 |
| 521 | Influenza A Adenovirus B | Influenza A | 10−9 | nd | – |
| 533 | Influenza A, Bocavirus | Influenza A | 10−9 | Influenza A | 10−24 |
| 559 | Influenza A, Enterovirus (Corona 229E) | Influenza A | 10−9 | Influenza A | 10−25 |
| 565 | Influenza B (Corona NL 63) | Influenza B | 10−7 | Influenza B | 10−22 |
| 608 | Adenovirus E, Influenza A | none | 10−4 | nd | – |
| 621 | Influenza B, Corona NL 63 | Influenza B | 10−9 | Influenza B | 10−26 |
| 635 | Enterovirus, Influenza A, Rhinovirus | Influenza A | 10−9 | Influenza A | 10−23 |
| 639 | Influenza A, Corona OC43 | Influenza A | 10−9 | Influenza A | 10−26 |
| 664 | Influenza A, Rhinovirus | Influenza A | 10−9 | Influenza A | 10−25 |
| 721 | Influenza A, Rhinovirus | Influenza A | 10−9 | Influenza A | 10−24 |
| 750 | Influenza B (Bocavirus) | Influenza B | 10−4 | Influenza B | 10−13 |
| 818 | Influenza B, Corona HKU1 | Influenza B | 10−9 | Influenza B | 10−28 |
nd: not done.
Questionable result placed in brackets.
MDCK 33016PF passages of field samples tested positive or questionable for respiratory tract viruses.
| Viruses detected (no. of samples) | ||
|---|---|---|
| Original clinical sample | 2nd passage MDCK 33016PF | 3rd passage MDCK 33016PF |
| Enterovirus (16) | None (15), Enterovirus (1, questionable) | None (16) |
| Rhinovirus (12) | None (12) | nt |
| Coronavirus (9) | None (8), Coronavirus (1, borderline) | None (9) |
| Resp. Syncytial Virus (8) | None (7), RSV (1, questionable) | None (8) |
| Adenovirus (3) | None (3) | nt |
| Human metapneumovirus (3) | None (3) | nt |
| Parainfluenza virus (2) | None (2) | nt |
| Bocavirus (1) | None (1) | nt |
Three double infections were counted individually. Maximum dilution of the original specimen for the 2nd passages was 2 × 104 3rd passage was done 1:10 from 2nd passage supernatant. nt: not tested.