Literature DB >> 22118472

Tunneling and conformational flexibility play critical roles in the isomerization mechanism of vitamin D.

Rubén Meana-Pañeda1, Antonio Fernández-Ramos.   

Abstract

The thermal isomerization reaction converting previtamin D to vitamin D is an intramolecular [1,7]-sigmatropic hydrogen shift with antarafacial stereochemistry. We have studied the dynamics of this reaction by means of the variational transition-state theory with multidimensional corrections for tunneling in both gas-phase and n-hexane environments. Two issues that may have important effects on the dynamics were analyzed in depth, i.e., the conformations of previtamin D and the quantum effects associated with the hydrogen-transfer reaction. Of the large number of conformers of previtamin D that were located, there are 16 that have the right disposition to react. The transition-state structures associated with these reaction paths are very close in energy, so all of them should be taken into account for an accurate calculation of both the thermal rate constants and the kinetic isotope effects. This issue is particularly important because the contribution of each of the reaction paths to the total thermal rate constant is quite sensitive to the environment. The dynamics results confirm that tunneling plays an important role and that model systems that were considered previously to study the hydrogen shift reaction cannot mimic the complexity introduced by the flexibility of the rings of previtamin D. Finally, the characterization of the conformers of both previtamin D and vitamin D allowed the calculation of the thermal equilibrium constants of the isomerization process.
© 2011 American Chemical Society

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Year:  2011        PMID: 22118472     DOI: 10.1021/ja2077075

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  3 in total

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Journal:  Sci Rep       Date:  2022-02-22       Impact factor: 4.379

2.  Role of Microsolvation and Quantum Effects in the Accurate Prediction of Kinetic Isotope Effects: The Case of Hydrogen Atom Abstraction in Ethanol by Atomic Hydrogen in Aqueous Solution.

Authors:  Suraj Kannath; Paweł Adamczyk; David Ferro-Costas; Antonio Fernández-Ramos; Dan Thomas Major; Agnieszka Dybala-Defratyka
Journal:  J Chem Theory Comput       Date:  2020-01-21       Impact factor: 6.006

3.  TorsiFlex: an automatic generator of torsional conformers. Application to the twenty proteinogenic amino acids.

Authors:  David Ferro-Costas; Irea Mosquera-Lois; Antonio Fernández-Ramos
Journal:  J Cheminform       Date:  2021-12-24       Impact factor: 8.489

  3 in total

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