Literature DB >> 22116939

Two-stage genome-wide association study identifies variants in CAMSAP1L1 as susceptibility loci for epilepsy in Chinese.

Youling Guo1, Larry W Baum, Pak Chung Sham, Virginia Wong, Ping Wing Ng, Colin Hiu Tung Lui, Ngai Chuen Sin, Tak Hong Tsoi, Clara S M Tang, Johnny S H Kwan, Benjamin H K Yip, Su-Mei Xiao, G Neil Thomas, Yu Lung Lau, Wanling Yang, Stacey S Cherny, Patrick Kwan.   

Abstract

In the majority of patients, epilepsy is a complex disorder with multiple susceptibility genes interacting with environmental factors. However, we understand little about its genetic risks. Here, we report the first genome-wide association study (GWAS) to identify common susceptibility variants of epilepsy in Chinese. This two-stage GWAS included a total of 1087 patients and 3444 matched controls. In the combined analysis of the two stages, the strongest signals were observed with two highly correlated variants, rs2292096 [G] [P= 1.0 × 10(-8), odds ratio (OR) = 0.63] and rs6660197 [T] (P= 9.9 × 10(-7), OR = 0.69), with the former reaching genome-wide significance, on 1q32.1 in the CAMSAP1L1 gene, which encodes a cytoskeletal protein. We also refined a previously reported association with rs9390754 (P= 1.7 × 10(-5)) on 6q21 in the GRIK2 gene, which encodes a glutamate receptor, and identified several other loci in genes involved in neurotransmission or neuronal networking that warrant further investigation. Our results suggest that common genetic variants may increase the susceptibility to epilepsy in Chinese.

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Year:  2011        PMID: 22116939     DOI: 10.1093/hmg/ddr550

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  27 in total

1.  Association of BDNF Polymorphisms with the Risk of Epilepsy: a Multicenter Study.

Authors:  Hidayati Mohd Sha'ari; Batoul Sadat Haerian; Larry Baum; Hui Jan Tan; Mohd Hanip Rafia; Patrick Kwan; Stacey S Cherny; Pak Chung Sham; Hongsheng Gui; Azman Ali Raymond; Kheng Seang Lim; Zahurin Mohamed
Journal:  Mol Neurobiol       Date:  2015-04-16       Impact factor: 5.590

Review 2.  Genome-wide association studies in neurology.

Authors:  Meng-Shan Tan; Teng Jiang; Lan Tan; Jin-Tai Yu
Journal:  Ann Transl Med       Date:  2014-12

3.  Advances in epilepsy genetics and genomics.

Authors:  Jennifer A Kearney
Journal:  Epilepsy Curr       Date:  2012-07       Impact factor: 7.500

4.  Memo1-Mediated Tiling of Radial Glial Cells Facilitates Cerebral Cortical Development.

Authors:  Naoki Nakagawa; Charlotte Plestant; Keiko Yabuno-Nakagawa; Jingjun Li; Janice Lee; Chu-Wei Huang; Amelia Lee; Oleh Krupa; Aditi Adhikari; Suriya Thompson; Tamille Rhynes; Victoria Arevalo; Jason L Stein; Zoltán Molnár; Ali Badache; E S Anton
Journal:  Neuron       Date:  2019-07-02       Impact factor: 17.173

5.  SNP-based HLA allele tagging, imputation and association with antiepileptic drug-induced cutaneous reactions in Hong Kong Han Chinese.

Authors:  H Gui; M Kwok; L Baum; P C Sham; P Kwan; S S Cherny
Journal:  Pharmacogenomics J       Date:  2017-04-11       Impact factor: 3.550

6.  Accounting for selection and correlation in the analysis of two-stage genome-wide association studies.

Authors:  David S Robertson; A Toby Prevost; Jack Bowden
Journal:  Biostatistics       Date:  2016-03-18       Impact factor: 5.899

7.  Contribution of GABRG2 Polymorphisms to Risk of Epilepsy and Febrile Seizure: a Multicenter Cohort Study and Meta-analysis.

Authors:  Batoul Sadat Haerian; Larry Baum; Patrick Kwan; Stacey S Cherny; Jae-Gook Shin; Sung Eun Kim; Bok-Ghee Han; Hui Jan Tan; Azman Ali Raymond; Chong Tin Tan; Zahurin Mohamed
Journal:  Mol Neurobiol       Date:  2015-10-09       Impact factor: 5.590

Review 8.  Genome wide association studies (GWAS) and common forms of human epilepsy.

Authors:  Russell J Buono
Journal:  Epilepsy Behav       Date:  2013-07       Impact factor: 2.937

9.  Systems genetics identifies Sestrin 3 as a regulator of a proconvulsant gene network in human epileptic hippocampus.

Authors:  Jacques Behmoaras; Leonardo Bottolo; Michelle L Krishnan; Katharina Pernhorst; Paola L Meza Santoscoy; Michael R Johnson; Tiziana Rossetti; Doug Speed; Prashant K Srivastava; Marc Chadeau-Hyam; Nabil Hajji; Aleksandra Dabrowska; Maxime Rotival; Banafsheh Razzaghi; Stjepana Kovac; Klaus Wanisch; Federico W Grillo; Anna Slaviero; Sarah R Langley; Kirill Shkura; Paolo Roncon; Tisham De; Manuel Mattheisen; Pitt Niehusmann; Terence J O'Brien; Slave Petrovski; Marec von Lehe; Per Hoffmann; Johan Eriksson; Alison J Coffey; Sven Cichon; Matthew Walker; Michele Simonato; Bénédicte Danis; Manuela Mazzuferi; Patrik Foerch; Susanne Schoch; Vincenzo De Paola; Rafal M Kaminski; Vincent T Cunliffe; Albert J Becker; Enrico Petretto
Journal:  Nat Commun       Date:  2015-01-23       Impact factor: 14.919

10.  A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.

Authors:  Doug Speed; Clive Hoggart; Slave Petrovski; Ioanna Tachmazidou; Alison Coffey; Andrea Jorgensen; Hariklia Eleftherohorinou; Maria De Iorio; Marian Todaro; Tisham De; David Smith; Philip E Smith; Margaret Jackson; Paul Cooper; Mark Kellett; Stephen Howell; Mark Newton; Raju Yerra; Meng Tan; Chris French; Markus Reuber; Graeme E Sills; David Chadwick; Munir Pirmohamed; David Bentley; Ingrid Scheffer; Samuel Berkovic; David Balding; Aarno Palotie; Anthony Marson; Terence J O'Brien; Michael R Johnson
Journal:  Hum Mol Genet       Date:  2013-08-19       Impact factor: 6.150

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