Literature DB >> 22113821

Solution NMR structure of Asl3597 from Nostoc sp. PCC7120, the first structure from protein domain family PF12095, reveals a novel fold.

Erik A Feldmann1, Theresa A Ramelot, Yunhuang Yang, Rong Xiao, Thomas B Acton, John K Everett, Gaetano T Montelione, Michael A Kennedy.   

Abstract

The protein domain family PF12095 (DUF3571) is a functionally uncharacterized family of small proteins conserved from cyanobacteria to plants that are typically 85 to 95 amino acids in length in cyanobacteria. In this report, we describe the solution NMR structure of the 86-residue protein Asl3597 from Nostoc sp. PCC7120. The structure of Asl3597, which constitutes the first three-dimensional structure from protein family PF12095, has a unique α/β sandwich fold consisting of four anti-parallel β-strands opposite three continuous α-helices. Asl3597 may have a role in the assembly of the hydrophilic subcomplex of the cyanobacterial NAD(P)H complex as suggested by data for the orthologous Chlororespiratory reduction 7 protein from Arabidopsis thaliana.

Entities:  

Keywords:  2KRX; Asl3597; CRR7; DUF3571; NDH complex; PF12095; chlororespiratory reduction 7; structural genomics

Mesh:

Substances:

Year:  2011        PMID: 22113821      PMCID: PMC3315617          DOI: 10.1002/prot.23236

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  21 in total

1.  KEGG: kyoto encyclopedia of genes and genomes.

Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Electrostatics of nanosystems: application to microtubules and the ribosome.

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3.  Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA.

Authors:  Torsten Herrmann; Peter Güntert; Kurt Wüthrich
Journal:  J Mol Biol       Date:  2002-05-24       Impact factor: 5.469

4.  Automated NMR structure calculation with CYANA.

Authors:  Peter Güntert
Journal:  Methods Mol Biol       Date:  2004

5.  Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics.

Authors:  Yuanpeng J Huang; Robert Powers; Gaetano T Montelione
Journal:  J Am Chem Soc       Date:  2005-02-16       Impact factor: 15.419

6.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

7.  Modular evolution of the respiratory NADH:ubiquinone oxidoreductase and the origin of its modules.

Authors:  T Friedrich; H Weiss
Journal:  J Theor Biol       Date:  1997-08-21       Impact factor: 2.691

8.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

9.  Identification of a novel protein, CRR7, required for the stabilization of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis.

Authors:  M Kamruzzaman Munshi; Yoshichika Kobayashi; Toshiharu Shikanai
Journal:  Plant J       Date:  2005-12       Impact factor: 6.417

10.  Stereospecific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 repressor by biosynthetically directed fractional 13C labeling.

Authors:  D Neri; T Szyperski; G Otting; H Senn; K Wüthrich
Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

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  1 in total

1.  Applications of NMR-based PRE and EPR-based DEER spectroscopy to homodimer chain exchange characterization and structure determination.

Authors:  Yunhuang Yang; Theresa A Ramelot; Shuisong Ni; Robert M McCarrick; Michael A Kennedy
Journal:  Methods Mol Biol       Date:  2014
  1 in total

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