Literature DB >> 22113032

Divergent selection and heterogeneous migration rates across the range of Sitka spruce (Picea sitchensis).

Jason A Holliday1, Haktan Suren, Sally N Aitken.   

Abstract

Gene flow and effective population size (N(e)) should depend on a population's position within its range: those near the edges are expected to have smaller N(e) and lower relative emigration rates, whereas those nearer the centre should have larger N(e) and higher relative emigration rates. In species with continuous ranges, this phenomenon may limit the ability of peripheral populations to respond to divergent selection. Here, we employ Sitka spruce as a model to test these predictions. We previously genotyped 339 single nucleotide polymorphisms (SNPs) in 410 individuals from 13 populations, and used these data to identify putative targets of divergent selection, as well as to explore the extent to which central-peripheral structure may impede adaptation. Fourteen SNPs had outlier F(ST) estimates suggestive of divergent selection, of which nine were previously associated with phenotypic variation in adaptive traits (timing of autumn budset and cold hardiness). Using coalescent simulations, we show that populations from near the centre of the range have higher effective populations sizes than those from the edges, and that central populations contribute more migrants to marginal populations than the reverse. Our results suggest that while divergent selection appears to have shaped allele frequencies among populations, asymmetrical movement of alleles from the centre to the edges of the species range may affect the adaptive capacity of peripheral populations. In southern peripheral populations, the movement of cold-adapted alleles from the north represents a significant impediment to adaptation under climate change, while in the north, movement of warm-adapted alleles from the south may enhance adaptation.

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Year:  2011        PMID: 22113032      PMCID: PMC3297444          DOI: 10.1098/rspb.2011.1805

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  41 in total

1.  Indirect measures of gene flow and migration: FST not equal to 1/(4Nm + 1).

Authors:  M C Whitlock; D E McCauley
Journal:  Heredity (Edinb)       Date:  1999-02       Impact factor: 3.821

2.  Identifying adaptive genetic divergence among populations from genome scans.

Authors:  Mark A Beaumont; David J Balding
Journal:  Mol Ecol       Date:  2004-04       Impact factor: 6.185

3.  Cold Resistance and Injury in Woody Plants: Knowledge of hardy plant adaptations to freezing stress may help us to reduce winter damage.

Authors:  C J Weiser
Journal:  Science       Date:  1970-09-25       Impact factor: 47.728

4.  Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms.

Authors:  R C Lewontin; J Krakauer
Journal:  Genetics       Date:  1973-05       Impact factor: 4.562

5.  Strong spatial genetic structure in peripheral but not core populations of Sitka spruce [Picea sitchensis (Bong.) Carr.].

Authors:  Washington J Gapare; Sally N Aitken
Journal:  Mol Ecol       Date:  2005-08       Impact factor: 6.185

6.  Potential effects of climate change on ecosystem and tree species distribution in British Columbia.

Authors:  Andreas Hamann; Tongli Wang
Journal:  Ecology       Date:  2006-11       Impact factor: 5.499

7.  Widespread, ecologically relevant genetic markers developed from association mapping of climate-related traits in Sitka spruce (Picea sitchensis).

Authors:  Jason A Holliday; Kermit Ritland; Sally N Aitken
Journal:  New Phytol       Date:  2010-07-21       Impact factor: 10.151

8.  Landscape location affects genetic variation of Canada lynx (Lynx canadensis).

Authors:  M K Schwartz; L S Mills; Y Ortega; L F Ruggiero; F W Allendorf
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9.  A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis).

Authors:  Steven G Ralph; Hye Jung E Chun; Natalia Kolosova; Dawn Cooper; Claire Oddy; Carol E Ritland; Robert Kirkpatrick; Richard Moore; Sarah Barber; Robert A Holt; Steven J M Jones; Marco A Marra; Carl J Douglas; Kermit Ritland; Jörg Bohlmann
Journal:  BMC Genomics       Date:  2008-10-14       Impact factor: 3.969

10.  Identifying selected regions from heterozygosity and divergence using a light-coverage genomic dataset from two human populations.

Authors:  Taras K Oleksyk; Kai Zhao; Francisco M De La Vega; Dennis A Gilbert; Stephen J O'Brien; Michael W Smith
Journal:  PLoS One       Date:  2008-03-05       Impact factor: 3.240

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  13 in total

Review 1.  Evolutionary and ecological responses to anthropogenic climate change: update on anthropogenic climate change.

Authors:  Jill T Anderson; Anne Marie Panetta; Thomas Mitchell-Olds
Journal:  Plant Physiol       Date:  2012-10-05       Impact factor: 8.340

2.  Historical connectivity, contemporary isolation and local adaptation in a widespread but discontinuously distributed species endemic to Taiwan, Rhododendron oldhamii (Ericaceae).

Authors:  Y-C Hsieh; J-D Chung; C-N Wang; C-T Chang; C-Y Chen; S-Y Hwang
Journal:  Heredity (Edinb)       Date:  2013-04-17       Impact factor: 3.821

3.  Evolutionary responses of tree phenology to the combined effects of assortative mating, gene flow and divergent selection.

Authors:  J-P Soularue; A Kremer
Journal:  Heredity (Edinb)       Date:  2014-06-11       Impact factor: 3.821

4.  High-throughput transcriptome sequencing and preliminary functional analysis in four Neotropical tree species.

Authors:  Louise Brousseau; Alexandra Tinaut; Caroline Duret; Tiange Lang; Pauline Garnier-Gere; Ivan Scotti
Journal:  BMC Genomics       Date:  2014-03-27       Impact factor: 3.969

5.  Evolutionary and plastic responses to climate change in terrestrial plant populations.

Authors:  Steven J Franks; Jennifer J Weber; Sally N Aitken
Journal:  Evol Appl       Date:  2013-10-14       Impact factor: 5.183

6.  Genetic divergence and signatures of natural selection in marginal populations of a keystone, long-lived conifer, Eastern White Pine (Pinus strobus) from Northern Ontario.

Authors:  Vikram E Chhatre; Om P Rajora
Journal:  PLoS One       Date:  2014-05-23       Impact factor: 3.240

Review 7.  Time to get moving: assisted gene flow of forest trees.

Authors:  Sally N Aitken; Jordan B Bemmels
Journal:  Evol Appl       Date:  2015-08-24       Impact factor: 5.183

8.  Genetic Structure in the Northern Range Margins of Common Ash, Fraxinus excelsior L.

Authors:  Mari Mette Tollefsrud; Tor Myking; Jørn Henrik Sønstebø; Vaidotas Lygis; Ari Mikko Hietala; Myriam Heuertz
Journal:  PLoS One       Date:  2016-12-01       Impact factor: 3.240

9.  Transcriptome analysis of Pinus halepensis under drought stress and during recovery.

Authors:  Hagar Fox; Adi Doron-Faigenboim; Gilor Kelly; Ronny Bourstein; Ziv Attia; Jing Zhou; Yosef Moshe; Menachem Moshelion; Rakefet David-Schwartz
Journal:  Tree Physiol       Date:  2018-03-01       Impact factor: 4.196

10.  Evolutionary Quantitative Genomics of Populus trichocarpa.

Authors:  Ilga Porth; Jaroslav Klápště; Athena D McKown; Jonathan La Mantia; Robert D Guy; Pär K Ingvarsson; Richard Hamelin; Shawn D Mansfield; Jürgen Ehlting; Carl J Douglas; Yousry A El-Kassaby
Journal:  PLoS One       Date:  2015-11-23       Impact factor: 3.240

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