Literature DB >> 22110245

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs.

H E L Lischer1, L Excoffier.   

Abstract

UNLABELLED: The analysis of genetic data often requires a combination of several approaches using different and sometimes incompatible programs. In order to facilitate data exchange and file conversions between population genetics programs, we introduce PGDSpider, a Java program that can read 27 different file formats and export data into 29, partially overlapping, other file formats. The PGDSpider package includes both an intuitive graphical user interface and a command-line version allowing its integration in complex data analysis pipelines. AVAILABILITY: PGDSpider is freely available under the BSD 3-Clause license on http://cmpg.unibe.ch/software/PGDSpider/.

Mesh：

Year:  2011        PMID： 22110245     DOI： 10.1093/bioinformatics/btr642

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  267 in total

1.  Spontaneous Tumor Regression in Tasmanian Devils Associated with RASL11A Activation.

Authors:  Mark J Margres; Manuel Ruiz-Aravena; Rodrigo Hamede; Kusum Chawla; Austin H Patton; Matthew F Lawrance; Alexandra K Fraik; Amanda R Stahlke; Brian W Davis; Elaine A Ostrander; Menna E Jones; Hamish McCallum; Patrick J Paddison; Paul A Hohenlohe; David Hockenbery; Andrew Storfer
Journal:  Genetics       Date:  2020-06-18       Impact factor: 4.562

2.  Y-chromosomal sequences of diverse Indian populations and the ancestry of the Andamanese.

Authors:  Mayukh Mondal; Anders Bergström; Yali Xue; Francesc Calafell; Hafid Laayouni; Ferran Casals; Partha P Majumder; Chris Tyler-Smith; Jaume Bertranpetit
Journal:  Hum Genet       Date:  2017-04-25       Impact factor: 4.132

3.  Evaluating the OGG1 rs1052133 and rs293795 polymorphisms in a sample of rural workers from Central Brazil population: a comparative approach with the 1000 Genomes Project.

Authors:  Daniela de Melo E Silva; Alessandro Arruda Alves; Hugo Freire Nunes; Jheneffer Sonara Aguiar Ramos; Fernanda Craveiro Franco; Thannya Nascimento Soares
Journal:  Environ Sci Pollut Res Int       Date:  2018-07-21       Impact factor: 4.223

4.  Connectivity in riparian plants: influence of vegetation type and habitat fragmentation overrides water flow.

Authors:  Tara Hopley; Margaret Byrne
Journal:  Oecologia       Date:  2018-07-23       Impact factor: 3.225

5.  Population genetic inferences using immune gene SNPs mirror patterns inferred by microsatellites.

Authors:  Jean P Elbers; Rachel W Clostio; Sabrina S Taylor
Journal:  Mol Ecol Resour       Date:  2016-08-29       Impact factor: 7.090

6.  Genetic diversity analysis of Gossypium arboreum germplasm accessions using genotyping-by-sequencing.

Authors:  Ruijuan Li; John E Erpelding
Journal:  Genetica       Date:  2016-09-07       Impact factor: 1.082

7.  Landscape and taxon age are associated with differing patterns of hybridization in two Eucalyptus (Myrtaceae) subgenera.

Authors:  T P Robins; R M Binks; M Byrne; S D Hopper
Journal:  Ann Bot       Date:  2021-01-01       Impact factor: 4.357

8.  Conservation and genetic characterisation of common bean landraces from Cilento region (southern Italy): high differentiation in spite of low genetic diversity.

Authors:  Daniele De Luca; Paola Cennamo; Emanuele Del Guacchio; Riccardo Di Novella; Paolo Caputo
Journal:  Genetica       Date:  2017-10-13       Impact factor: 1.082

9.  Urban landscape genomics identifies fine-scale gene flow patterns in an avian invasive.

Authors:  G W Low; B Chattopadhyay; K M Garg; M Irestedt; Pgp Ericson; G Yap; Q Tang; S Wu; F E Rheindt
Journal:  Heredity (Edinb)       Date:  2017-12-11       Impact factor: 3.821

10.  Admixture mapping in a hybrid zone reveals loci associated with avian feather coloration.

Authors:  Alan Brelsford; David P L Toews; Darren E Irwin
Journal:  Proc Biol Sci       Date:  2017-11-15       Impact factor: 5.349
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