Literature DB >> 22104721

Metabolomics-assisted synthetic biology.

David I Ellis1, Royston Goodacre.   

Abstract

As the world progresses from a fossil-fuel based economy to a more sustainable one, synthetic biology will become increasingly important for the production of high-value fine chemicals as well as low-value commodities in bulk. The integration of metabolomics and fluxomics within synthetic biology projects will be vital at all levels, including the initial design of the pathways to be generated, through to the optimisation of those pathways so that more efficient conversion of low-cost starting materials into highly desirable products can be achieved. This review highlights these areas and details the most important and exciting advances being made in this area.
Copyright © 2011 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2011        PMID: 22104721     DOI: 10.1016/j.copbio.2011.10.014

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  14 in total

1.  Metabolic Profiling of Geobacter sulfurreducens during Industrial Bioprocess Scale-Up.

Authors:  Howbeer Muhamadali; Yun Xu; David I Ellis; J William Allwood; Nicholas J W Rattray; Elon Correa; Haitham Alrabiah; Jonathan R Lloyd; Royston Goodacre
Journal:  Appl Environ Microbiol       Date:  2015-03-06       Impact factor: 4.792

2.  Exploring the Glucose Fluxotype of the E. coli y-ome Using High-Resolution Fluxomics.

Authors:  Cécilia Bergès; Edern Cahoreau; Pierre Millard; Brice Enjalbert; Mickael Dinclaux; Maud Heuillet; Hanna Kulyk; Lara Gales; Noémie Butin; Maxime Chazalviel; Tony Palama; Matthieu Guionnet; Sergueï Sokol; Lindsay Peyriga; Floriant Bellvert; Stéphanie Heux; Jean-Charles Portais
Journal:  Metabolites       Date:  2021-04-26

3.  Metabolomics for secondary metabolite research.

Authors:  Rainer Breitling; Ana Ceniceros; Andris Jankevics; Eriko Takano
Journal:  Metabolites       Date:  2013-11-11

4.  Graphene oxide amplifies the phytotoxicity of arsenic in wheat.

Authors:  Xiangang Hu; Jia Kang; Kaicheng Lu; Ruiren Zhou; Li Mu; Qixing Zhou
Journal:  Sci Rep       Date:  2014-08-19       Impact factor: 4.379

5.  Molar-based targeted metabolic profiling of cyanobacterial strains with potential for biological production.

Authors:  Yudai Dempo; Erika Ohta; Yasumune Nakayama; Takeshi Bamba; Eiichiro Fukusaki
Journal:  Metabolites       Date:  2014-06-20

6.  Metabolic analysis of the response of Pseudomonas putida DOT-T1E strains to toluene using Fourier transform infrared spectroscopy and gas chromatography mass spectrometry.

Authors:  Ali Sayqal; Yun Xu; Drupad K Trivedi; Najla AlMasoud; David I Ellis; Howbeer Muhamadali; Nicholas J W Rattray; Carole Webb; Royston Goodacre
Journal:  Metabolomics       Date:  2016-06-21       Impact factor: 4.290

7.  Metabolomics investigation of recombinant mTNFα production in Streptomyces lividans.

Authors:  Howbeer Muhamadali; Yun Xu; David I Ellis; Drupad K Trivedi; Nicholas J W Rattray; Kristel Bernaerts; Royston Goodacre
Journal:  Microb Cell Fact       Date:  2015-10-09       Impact factor: 5.328

8.  Integrated isotope-assisted metabolomics and (13)C metabolic flux analysis reveals metabolic flux redistribution for high glucoamylase production by Aspergillus niger.

Authors:  Hongzhong Lu; Xiaoyun Liu; Mingzhi Huang; Jianye Xia; Ju Chu; Yingping Zhuang; Siliang Zhang; Henk Noorman
Journal:  Microb Cell Fact       Date:  2015-09-17       Impact factor: 5.328

9.  Triterpenoid profiling and functional characterization of the initial genes involved in isoprenoid biosynthesis in neem (Azadirachta indica).

Authors:  Avinash Pandreka; Devdutta S Dandekar; Saikat Haldar; Vairagkar Uttara; Shinde G Vijayshree; Fayaj A Mulani; Thiagarayaselvam Aarthy; Hirekodathakallu V Thulasiram
Journal:  BMC Plant Biol       Date:  2015-09-03       Impact factor: 4.215

10.  Metabolomics Analysis Reveals the Participation of Efflux Pumps and Ornithine in the Response of Pseudomonas putida DOT-T1E Cells to Challenge with Propranolol.

Authors:  Ali Sayqal; Yun Xu; Drupad K Trivedi; Najla AlMasoud; David I Ellis; Nicholas J W Rattray; Royston Goodacre
Journal:  PLoS One       Date:  2016-06-22       Impact factor: 3.240

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