Literature DB >> 22091179

p-Tolyl bis-(cyclo-hexyl-amido)-phosphinate.

Akbar Raissi Shabari, Mehrdad Pourayoubi, Afsaneh Taghizadeh, Farnaz Ghoreishi, Banafsheh Vahdani.   

Abstract

The P atom in the title mol-ecule, C(19)H(31)N(2)O(2)P, is in a distorted pan class="Species">tetra-hedral configuration with the bond angles in the range 101.48 (10)-118.58 (9)°. The N-H units have a syn orientation with resclass="Chemical">pect to one another. In the crystal, mol-ecules are connected via two different inter-molecular N-H⋯O(P) class="Chemical">pan class="Chemical">hydrogen bonds into chains along the a axis in which the O atom of the P=O group acts as a double acceptor.

Entities:  

Year:  2011        PMID: 22091179      PMCID: PMC3213602          DOI: 10.1107/S1600536811029722

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to phospho­ramidate compounds, see: Pourayoubi et al. (2011 ▶). For bond lengths in related structures, see: Sabbaghi et al. (2011 ▶); pan class="Species">Rudd et al. (1996 ▶). For double class="Chemical">pan class="Chemical">hydrogen-bond acceptors, see: Steiner (2002 ▶).

Experimental

Crystal data

pan class="Chemical">C19H31N2O2P M = 350.43 Monoclinic, a = 9.131 (5) Å b = 19.333 (5) Å c = 11.291 (5) Å β = 99.247 (5)° V = 1967.3 (15) Å3 Z = 4 Mo Kα radiation μ = 0.15 mm−1 T = 291 K 0.38 × 0.12 × 0.08 mm

Data collection

Stoe IPDS II image plate diffractometer Absorption correction: multi-scan [MULABS (Blessing, 1995 ▶) in PLATON (Spek, 2009 ▶)] T min = 0.992, T max = 1.000 14835 measured reflections 5296 independent reflections 1925 reflections with I > 2σ(I) R int = 0.091

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.090 S = 0.76 5296 reflections 218 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.26 e Å−3 Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PLATON (Spek, 2009 ▶) and enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811029722/lh5287sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811029722/lh5287Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811029722/lh5287Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H31N2O2PF(000) = 760
Mr = 350.43Dx = 1.183 Mg m3
Monoclinic, P21/aMo Kα radiation, λ = 0.71069 Å
Hall symbol: -P 2yabCell parameters from 3912 reflections
a = 9.131 (5) Åθ = 1.8–29.5°
b = 19.333 (5) ŵ = 0.15 mm1
c = 11.291 (5) ÅT = 291 K
β = 99.247 (5)°Block, colourless
V = 1967.3 (15) Å30.38 × 0.12 × 0.08 mm
Z = 4
Stoe IPDS II image plate diffractometer5296 independent reflections
Radiation source: fine-focus sealed tube1925 reflections with I > 2σ(I)
graphiteRint = 0.091
Detector resolution: 0.15 mm pixels mm-1θmax = 29.2°, θmin = 1.8°
ω scansh = −12→9
Absorption correction: multi-scan [MULABS (Blessing, 1995) in PLATON (Spek, 2009)]k = −22→26
Tmin = 0.992, Tmax = 1.000l = −15→15
14835 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H-atom parameters constrained
S = 0.76w = 1/[σ2(Fo2) + (0.0255P)2] where P = (Fo2 + 2Fc2)/3
5296 reflections(Δ/σ)max = 0.001
218 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.71746 (8)0.80003 (4)0.50141 (5)0.03970 (16)
O10.87988 (16)0.79943 (9)0.51391 (11)0.0481 (4)
O20.66002 (18)0.87739 (8)0.46763 (13)0.0530 (5)
N10.6357 (2)0.74705 (11)0.40180 (15)0.0540 (6)
H10.56950.72860.42040.065*
N20.6418 (2)0.78465 (10)0.61857 (13)0.0488 (6)
H20.57530.76130.60760.059*
C10.7075 (3)0.71015 (13)0.31259 (16)0.0433 (6)
H1A0.79440.73700.29940.052*
C20.7592 (3)0.63929 (14)0.3529 (2)0.0637 (8)
H2A0.67530.61250.37000.076*
H2B0.83010.64290.42640.076*
C30.8310 (4)0.60189 (16)0.2589 (2)0.0779 (9)
H3A0.85960.55570.28700.093*
H3B0.91990.62640.24650.093*
C40.7244 (3)0.59729 (16)0.1408 (2)0.0749 (9)
H4A0.77380.57560.08060.090*
H4B0.63970.56900.15130.090*
C50.6727 (4)0.66822 (17)0.0996 (2)0.0755 (9)
H5A0.60100.66440.02660.091*
H5B0.75650.69470.08130.091*
C60.6017 (3)0.70671 (14)0.19495 (17)0.0579 (7)
H6A0.57530.75320.16720.070*
H6B0.51160.68310.20700.070*
C70.6472 (3)0.83281 (12)0.71992 (17)0.0434 (6)
H7A0.71470.87060.70740.052*
C80.7099 (3)0.79764 (16)0.83611 (18)0.0739 (9)
H8A0.80940.78150.83180.089*
H8B0.64940.75770.84730.089*
C90.7148 (4)0.84609 (17)0.94366 (19)0.0768 (10)
H9A0.75120.82101.01680.092*
H9B0.78300.88380.93660.092*
C100.5655 (4)0.87468 (17)0.9507 (2)0.0772 (10)
H10A0.57210.90651.01780.093*
H10B0.49900.83740.96420.093*
C110.5044 (4)0.91182 (17)0.8365 (2)0.0913 (11)
H11A0.56600.95170.82710.110*
H11B0.40510.92820.84100.110*
C120.4996 (3)0.86385 (16)0.7272 (2)0.0715 (9)
H12A0.42850.82710.73210.086*
H12B0.46620.89000.65450.086*
C130.7349 (3)0.92389 (13)0.40431 (19)0.0448 (6)
C140.7785 (4)0.98514 (16)0.4565 (2)0.0709 (9)
H14A0.76140.99460.53380.085*
C150.8477 (4)1.03306 (16)0.3956 (2)0.0788 (10)
H15A0.87681.07490.43270.095*
C160.8753 (3)1.02153 (15)0.2822 (2)0.0572 (7)
C170.8292 (3)0.95964 (15)0.2303 (2)0.0596 (8)
H17A0.84520.95040.15260.072*
C180.7597 (3)0.91060 (14)0.2906 (2)0.0566 (7)
H18A0.72980.86870.25380.068*
C190.9524 (4)1.07473 (16)0.2168 (3)0.0979 (12)
H19A1.04891.08410.26140.147*
H19B0.89501.11660.20840.147*
H19C0.96231.05750.13880.147*
U11U22U33U12U13U23
P10.0361 (3)0.0466 (4)0.0374 (3)0.0011 (4)0.0089 (2)−0.0014 (3)
O10.0345 (10)0.0549 (12)0.0549 (9)−0.0006 (10)0.0065 (7)0.0005 (8)
O20.0502 (12)0.0530 (12)0.0600 (10)0.0080 (10)0.0210 (8)0.0112 (8)
N10.0438 (13)0.0734 (16)0.0488 (10)−0.0117 (12)0.0196 (9)−0.0200 (10)
N20.0561 (13)0.0520 (15)0.0416 (9)−0.0139 (12)0.0182 (9)−0.0067 (9)
C10.0433 (14)0.0487 (18)0.0403 (11)−0.0051 (14)0.0141 (10)−0.0057 (11)
C20.073 (2)0.066 (2)0.0506 (14)0.0140 (18)0.0063 (13)0.0064 (14)
C30.083 (3)0.067 (2)0.084 (2)0.029 (2)0.0128 (17)−0.0021 (16)
C40.081 (2)0.071 (2)0.0782 (19)−0.003 (2)0.0282 (17)−0.0296 (17)
C50.092 (2)0.088 (3)0.0452 (14)0.011 (2)0.0089 (14)−0.0147 (15)
C60.0702 (18)0.0572 (18)0.0452 (12)0.0103 (17)0.0056 (12)−0.0002 (13)
C70.0493 (17)0.0437 (16)0.0391 (12)−0.0108 (13)0.0127 (11)−0.0037 (11)
C80.084 (2)0.088 (2)0.0474 (14)0.028 (2)0.0033 (13)−0.0066 (15)
C90.085 (2)0.101 (3)0.0421 (14)0.013 (2)0.0043 (14)−0.0095 (14)
C100.083 (2)0.100 (3)0.0533 (16)−0.006 (2)0.0253 (15)−0.0225 (15)
C110.092 (3)0.107 (3)0.0727 (19)0.041 (2)0.0048 (17)−0.0266 (18)
C120.065 (2)0.094 (2)0.0522 (15)0.0257 (19)−0.0001 (13)−0.0125 (15)
C130.0411 (16)0.0481 (18)0.0457 (13)0.0065 (14)0.0084 (11)0.0076 (12)
C140.110 (3)0.058 (2)0.0485 (15)−0.009 (2)0.0244 (16)−0.0067 (14)
C150.109 (3)0.058 (2)0.0689 (18)−0.021 (2)0.0120 (18)−0.0091 (15)
C160.0531 (19)0.057 (2)0.0602 (16)−0.0057 (17)0.0047 (13)0.0123 (15)
C170.067 (2)0.068 (2)0.0466 (14)−0.0009 (17)0.0162 (13)0.0010 (14)
C180.0625 (19)0.0537 (19)0.0560 (15)−0.0107 (16)0.0168 (13)−0.0086 (13)
C190.102 (3)0.089 (3)0.103 (2)−0.028 (2)0.018 (2)0.0294 (19)
P1—O11.4670 (17)C8—C91.528 (3)
P1—O21.6105 (17)C8—H8A0.9700
P1—N11.6131 (19)C8—H8B0.9700
P1—N21.6152 (18)C9—C101.486 (4)
O2—C131.394 (3)C9—H9A0.9700
N1—C11.472 (3)C9—H9B0.9700
N1—H10.7593C10—C111.503 (4)
N2—C71.470 (3)C10—H10A0.9700
N2—H20.7510C10—H10B0.9700
C1—C21.496 (3)C11—C121.539 (3)
C1—C61.513 (3)C11—H11A0.9700
C1—H1A0.9800C11—H11B0.9700
C2—C31.517 (3)C12—H12A0.9700
C2—H2A0.9700C12—H12B0.9700
C2—H2B0.9700C13—C141.354 (3)
C3—C41.522 (3)C13—C181.364 (3)
C3—H3A0.9700C14—C151.367 (4)
C3—H3B0.9700C14—H14A0.9300
C4—C51.500 (4)C15—C161.362 (3)
C4—H4A0.9700C15—H15A0.9300
C4—H4B0.9700C16—C171.369 (3)
C5—C61.536 (3)C16—C191.505 (4)
C5—H5A0.9700C17—C181.380 (3)
C5—H5B0.9700C17—H17A0.9300
C6—H6A0.9700C18—H18A0.9300
C6—H6B0.9700C19—H19A0.9600
C7—C121.490 (3)C19—H19B0.9600
C7—C81.506 (3)C19—H19C0.9600
C7—H7A0.9800
O1—P1—O2108.41 (10)C7—C8—C9112.0 (2)
O1—P1—N1114.19 (10)C7—C8—H8A109.2
O2—P1—N1109.13 (10)C9—C8—H8A109.2
O1—P1—N2118.58 (9)C7—C8—H8B109.2
O2—P1—N2101.48 (10)C9—C8—H8B109.2
N1—P1—N2104.07 (11)H8A—C8—H8B107.9
C13—O2—P1123.52 (15)C10—C9—C8111.1 (2)
C1—N1—P1125.28 (16)C10—C9—H9A109.4
C1—N1—H1115.1C8—C9—H9A109.4
P1—N1—H1113.9C10—C9—H9B109.4
C7—N2—P1123.76 (16)C8—C9—H9B109.4
C7—N2—H2115.8H9A—C9—H9B108.0
P1—N2—H2114.6C9—C10—C11110.4 (2)
N1—C1—C2112.93 (18)C9—C10—H10A109.6
N1—C1—C6109.3 (2)C11—C10—H10A109.6
C2—C1—C6110.6 (2)C9—C10—H10B109.6
N1—C1—H1A107.9C11—C10—H10B109.6
C2—C1—H1A107.9H10A—C10—H10B108.1
C6—C1—H1A107.9C10—C11—C12111.1 (3)
C1—C2—C3112.0 (2)C10—C11—H11A109.4
C1—C2—H2A109.2C12—C11—H11A109.4
C3—C2—H2A109.2C10—C11—H11B109.4
C1—C2—H2B109.2C12—C11—H11B109.4
C3—C2—H2B109.2H11A—C11—H11B108.0
H2A—C2—H2B107.9C7—C12—C11112.2 (2)
C2—C3—C4110.7 (2)C7—C12—H12A109.2
C2—C3—H3A109.5C11—C12—H12A109.2
C4—C3—H3A109.5C7—C12—H12B109.2
C2—C3—H3B109.5C11—C12—H12B109.2
C4—C3—H3B109.5H12A—C12—H12B107.9
H3A—C3—H3B108.1C14—C13—C18119.5 (2)
C5—C4—C3110.1 (2)C14—C13—O2118.4 (2)
C5—C4—H4A109.6C18—C13—O2122.0 (2)
C3—C4—H4A109.6C13—C14—C15120.1 (2)
C5—C4—H4B109.6C13—C14—H14A120.0
C3—C4—H4B109.6C15—C14—H14A120.0
H4A—C4—H4B108.2C16—C15—C14122.1 (3)
C4—C5—C6111.9 (2)C16—C15—H15A118.9
C4—C5—H5A109.2C14—C15—H15A118.9
C6—C5—H5A109.2C15—C16—C17117.1 (3)
C4—C5—H5B109.2C15—C16—C19121.4 (3)
C6—C5—H5B109.2C17—C16—C19121.5 (3)
H5A—C5—H5B107.9C16—C17—C18121.6 (2)
C1—C6—C5110.8 (2)C16—C17—H17A119.2
C1—C6—H6A109.5C18—C17—H17A119.2
C5—C6—H6A109.5C13—C18—C17119.6 (2)
C1—C6—H6B109.5C13—C18—H18A120.2
C5—C6—H6B109.5C17—C18—H18A120.2
H6A—C6—H6B108.1C16—C19—H19A109.5
N2—C7—C12112.36 (19)C16—C19—H19B109.5
N2—C7—C8110.7 (2)H19A—C19—H19B109.5
C12—C7—C8110.73 (19)C16—C19—H19C109.5
N2—C7—H7A107.6H19A—C19—H19C109.5
C12—C7—H7A107.6H19B—C19—H19C109.5
C8—C7—H7A107.6
O1—P1—O2—C1329.02 (19)N2—C7—C8—C9−179.1 (2)
N1—P1—O2—C13−95.91 (19)C12—C7—C8—C9−53.9 (3)
N2—P1—O2—C13154.63 (17)C7—C8—C9—C1056.4 (3)
O1—P1—N1—C1−11.6 (2)C8—C9—C10—C11−57.2 (3)
O2—P1—N1—C1109.9 (2)C9—C10—C11—C1256.4 (3)
N2—P1—N1—C1−142.37 (19)N2—C7—C12—C11177.5 (2)
O1—P1—N2—C770.6 (2)C8—C7—C12—C1153.2 (3)
O2—P1—N2—C7−48.0 (2)C10—C11—C12—C7−55.1 (4)
N1—P1—N2—C7−161.28 (18)P1—O2—C13—C14−121.7 (2)
P1—N1—C1—C294.3 (2)P1—O2—C13—C1861.1 (3)
P1—N1—C1—C6−142.1 (2)C18—C13—C14—C15−0.4 (4)
N1—C1—C2—C3179.3 (2)O2—C13—C14—C15−177.7 (3)
C6—C1—C2—C356.4 (3)C13—C14—C15—C16−0.1 (5)
C1—C2—C3—C4−57.1 (3)C14—C15—C16—C170.7 (5)
C2—C3—C4—C556.1 (3)C14—C15—C16—C19−179.6 (3)
C3—C4—C5—C6−55.9 (3)C15—C16—C17—C18−0.9 (4)
N1—C1—C6—C5−179.8 (2)C19—C16—C17—C18179.5 (3)
C2—C1—C6—C5−54.8 (3)C14—C13—C18—C170.2 (4)
C4—C5—C6—C155.7 (3)O2—C13—C18—C17177.4 (2)
P1—N2—C7—C12110.5 (2)C16—C17—C18—C130.4 (4)
P1—N2—C7—C8−125.2 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.762.232.969 (3)163.
N2—H2···O1i0.752.252.975 (3)162.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.762.232.969 (3)163
N2—H2⋯O1i0.752.252.975 (3)162

Symmetry code: (i) .

  6 in total

1.  The hydrogen bond in the solid state.

Authors:  Thomas Steiner
Journal:  Angew Chem Int Ed Engl       Date:  2002-01-04       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Different cyclic motifs in phosphoric triamides containing a C(O)NHP(O)(NH)2 skeleton and an R(2)(2)(10) graph set in three new compounds: a database analysis of hydrogen-bond strengths based on motifs.

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Journal:  Acta Crystallogr C       Date:  2011-06-29       Impact factor: 1.172

4.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

5.  O-Phenyl (cyclo-hexyl-amido)(p-tolyl-amido)-phosphinate.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Fatemeh Karimi Ahmadabad; Masood Parvez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-25

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
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  6 in total

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