Literature DB >> 22091166

(E)-2-[4-(Dimethyl-amino)-styr-yl]-1-methyl-pyridinium triiodide.

Hoong-Kun Fun, Kullapa Chanawanno, Suchada Chantrapromma.   

Abstract

The asymmetric unit of the title compound, C(16)H(19)N(2) (+)·I(3) (-), contains a (E)-2-[4-(dimethyl-amino)-styr-yl)-1-methyl-pyrid-in-ium cation and half each of two triiodide anions. The complete triiodide anions are each generated by inversion symmetry. The planar cation has all of its eighteen non-H atoms situated on a mirror plane. In the crystal, the cations are stacked along the b axis by π-π inter-actions with a centroid-centroid distance of 3.5757 (13) Å. The triiodide anions are located between the cations. The crystal structure is further consolidated by short CC [3.322 (9)-3.3952 (19) Å] contacts.

Entities:  

Year:  2011        PMID: 22091166      PMCID: PMC3213589          DOI: 10.1107/S1600536811028753

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and applications of pyridinium compounds, see: Chanawanno et al. (2010 ▶); Fisicaro et al. (1990 ▶); Pernak et al. (2001 ▶). For related structures, see: Chantrapromma et al. (2010 ▶); Zhang et al. (2008 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C16H19N2 +·I3 − M = 620.03 Monoclinic, a = 19.8760 (3) Å b = 6.6126 (1) Å c = 14.4421 (2) Å β = 95.107 (1)° V = 1890.62 (5) Å3 Z = 4 Mo Kα radiation μ = 4.96 mm−1 T = 100 K 0.45 × 0.15 × 0.04 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.212, T max = 0.838 16143 measured reflections 2484 independent reflections 2263 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.079 S = 1.04 2484 reflections 129 parameters H-atom parameters constrained Δρmax = 1.74 e Å−3 Δρmin = −0.60 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811028753/sj5182sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811028753/sj5182Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811028753/sj5182Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H19N2+·I3F(000) = 1152
Mr = 620.03Dx = 2.178 Mg m3
Monoclinic, C2/mMelting point > 537 K
Hall symbol: -C 2yMo Kα radiation, λ = 0.71073 Å
a = 19.8760 (3) ÅCell parameters from 2484 reflections
b = 6.6126 (1) Åθ = 1.4–28.0°
c = 14.4421 (2) ŵ = 4.96 mm1
β = 95.107 (1)°T = 100 K
V = 1890.62 (5) Å3Needle, orange
Z = 40.45 × 0.15 × 0.04 mm
Bruker APEX DUO CCD area-detector diffractometer2484 independent reflections
Radiation source: sealed tube2263 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scansθmax = 28.0°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −26→26
Tmin = 0.212, Tmax = 0.838k = −8→8
16143 measured reflectionsl = −19→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0387P)2 + 13.6577P] where P = (Fo2 + 2Fc2)/3
2484 reflections(Δ/σ)max = 0.001
129 parametersΔρmax = 1.74 e Å3
0 restraintsΔρmin = −0.60 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.50000.50000.00000.02351 (12)
I20.424696 (18)0.50000.16345 (3)0.03339 (11)
I30.50000.50000.50000.03354 (14)
I40.35817 (2)0.50000.42352 (3)0.03813 (12)
N10.2700 (3)0.00001.2529 (3)0.0300 (10)
N20.4157 (3)0.00000.6794 (4)0.0393 (12)
C10.2277 (3)0.00001.3233 (4)0.0338 (13)
H1A0.24720.00001.38580.041*
C20.1609 (3)0.00001.3078 (4)0.0356 (13)
H2A0.13310.00001.35800.043*
C30.1319 (3)0.00001.2140 (4)0.0329 (12)
H3A0.08420.00001.20070.039*
C40.1724 (3)0.00001.1446 (4)0.0319 (12)
H4A0.15300.00001.08200.038*
C50.2453 (3)0.00001.1631 (4)0.0288 (11)
C60.2883 (3)0.00001.0881 (4)0.0255 (10)
H6A0.33550.00001.10520.031*
C70.2692 (3)0.00000.9977 (4)0.0275 (11)
H7A0.22180.00000.98170.033*
C80.3107 (3)0.00000.9192 (4)0.0290 (11)
C90.2775 (3)0.00000.8304 (4)0.0289 (11)
H9A0.22950.00000.82400.035*
C100.3105 (3)0.00000.7535 (4)0.0272 (11)
H10A0.28520.00000.69450.033*
C110.3815 (3)0.00000.7579 (4)0.0232 (10)
C120.4171 (3)0.00000.8475 (4)0.0272 (11)
H12A0.46510.00000.85360.033*
C130.3818 (3)0.00000.9268 (4)0.0336 (12)
H13A0.40590.00000.98660.040*
C140.3424 (3)0.00001.2755 (5)0.0361 (13)
H14A0.35990.11661.24610.043*
H14B0.35460.00001.34140.043*
C150.3804 (4)0.00000.5885 (4)0.0391 (14)
H15A0.35160.11660.58440.047*
H15B0.41100.00000.54070.047*
C160.4903 (3)0.00000.6862 (5)0.0460 (16)
H16A0.50520.11660.72190.055*
H16B0.50730.00000.62610.055*
U11U22U33U12U13U23
I10.0208 (2)0.0210 (2)0.0277 (2)0.000−0.00351 (16)0.000
I20.03043 (19)0.0368 (2)0.0338 (2)0.0000.00747 (14)0.000
I30.0526 (3)0.0261 (3)0.0232 (2)0.0000.0100 (2)0.000
I40.0541 (3)0.0367 (2)0.02383 (19)0.0000.00475 (16)0.000
N10.038 (2)0.023 (2)0.028 (2)0.000−0.0003 (19)0.000
N20.047 (3)0.044 (3)0.028 (2)0.0000.011 (2)0.000
C10.059 (4)0.018 (2)0.026 (3)0.0000.014 (2)0.000
C20.054 (4)0.023 (3)0.031 (3)0.0000.010 (3)0.000
C30.038 (3)0.023 (3)0.037 (3)0.0000.002 (2)0.000
C40.052 (3)0.020 (2)0.022 (2)0.000−0.005 (2)0.000
C50.050 (3)0.015 (2)0.023 (2)0.0000.011 (2)0.000
C60.036 (3)0.017 (2)0.024 (2)0.0000.004 (2)0.000
C70.033 (3)0.022 (2)0.027 (3)0.0000.002 (2)0.000
C80.039 (3)0.017 (2)0.034 (3)0.0000.013 (2)0.000
C90.026 (2)0.017 (2)0.044 (3)0.0000.005 (2)0.000
C100.027 (2)0.017 (2)0.036 (3)0.000−0.008 (2)0.000
C110.033 (3)0.017 (2)0.021 (2)0.0000.0046 (19)0.000
C120.025 (2)0.025 (3)0.030 (3)0.000−0.003 (2)0.000
C130.052 (3)0.025 (3)0.022 (3)0.000−0.008 (2)0.000
C140.040 (3)0.030 (3)0.038 (3)0.0000.005 (2)0.000
C150.052 (4)0.037 (3)0.028 (3)0.0000.004 (3)0.000
C160.040 (3)0.056 (4)0.044 (4)0.0000.015 (3)0.000
I1—I2i2.9054 (4)C6—H6A0.9500
I1—I22.9054 (4)C7—C81.459 (8)
I3—I42.9347 (4)C7—H7A0.9500
I3—I4ii2.9347 (4)C8—C91.389 (8)
N1—C51.346 (7)C8—C131.407 (9)
N1—C11.375 (7)C9—C101.339 (8)
N1—C141.448 (8)C9—H9A0.9500
N2—C111.373 (7)C10—C111.407 (7)
N2—C151.433 (8)C10—H10A0.9500
N2—C161.476 (9)C11—C121.420 (7)
C1—C21.327 (9)C12—C131.396 (8)
C1—H1A0.9500C12—H12A0.9500
C2—C31.425 (9)C13—H13A0.9500
C2—H2A0.9500C14—H14A0.9601
C3—C41.341 (9)C14—H14B0.9600
C3—H3A0.9500C15—H15A0.9600
C4—C51.449 (9)C15—H15B0.9598
C4—H4A0.9500C16—H16A0.9600
C5—C61.438 (7)C16—H16B0.9600
C6—C71.327 (8)
I2i—I1—I2180.000 (12)C8—C7—H7A115.4
I4—I3—I4ii180.0C9—C8—C13117.6 (5)
C5—N1—C1121.2 (5)C9—C8—C7117.5 (5)
C5—N1—C14119.2 (5)C13—C8—C7124.9 (5)
C1—N1—C14119.6 (5)C10—C9—C8122.6 (5)
C11—N2—C15121.2 (5)C10—C9—H9A118.7
C11—N2—C16120.9 (5)C8—C9—H9A118.7
C15—N2—C16117.9 (5)C9—C10—C11121.7 (5)
C2—C1—N1122.9 (6)C9—C10—H10A119.2
C2—C1—H1A118.6C11—C10—H10A119.2
N1—C1—H1A118.6N2—C11—C10122.2 (5)
C1—C2—C3118.4 (6)N2—C11—C12120.6 (5)
C1—C2—H2A120.8C10—C11—C12117.3 (5)
C3—C2—H2A120.8C13—C12—C11120.1 (5)
C4—C3—C2119.4 (6)C13—C12—H12A120.0
C4—C3—H3A120.3C11—C12—H12A120.0
C2—C3—H3A120.3C12—C13—C8120.8 (5)
C3—C4—C5121.3 (5)C12—C13—H13A119.6
C3—C4—H4A119.4C8—C13—H13A119.6
C5—C4—H4A119.4N1—C14—H14A106.9
N1—C5—C6122.4 (5)N1—C14—H14B112.4
N1—C5—C4116.8 (5)H14A—C14—H14B111.7
C6—C5—C4120.8 (5)N2—C15—H15A107.3
C7—C6—C5127.2 (5)N2—C15—H15B111.7
C7—C6—H6A116.4H15A—C15—H15B111.7
C5—C6—H6A116.4N2—C16—H16A107.2
C6—C7—C8129.3 (5)N2—C16—H16B111.9
C6—C7—H7A115.4H16A—C16—H16B111.7
C5—N1—C1—C20.000 (3)C6—C7—C8—C130.000 (2)
C14—N1—C1—C2180.000 (2)C13—C8—C9—C100.000 (2)
N1—C1—C2—C30.000 (3)C7—C8—C9—C10180.000 (2)
C1—C2—C3—C40.000 (3)C8—C9—C10—C110.000 (2)
C2—C3—C4—C50.000 (3)C15—N2—C11—C100.000 (2)
C1—N1—C5—C6180.000 (2)C16—N2—C11—C10180.000 (1)
C14—N1—C5—C60.000 (3)C15—N2—C11—C12180.000 (1)
C1—N1—C5—C40.000 (3)C16—N2—C11—C120.000 (2)
C14—N1—C5—C4180.000 (2)C9—C10—C11—N2180.000 (1)
C3—C4—C5—N10.000 (2)C9—C10—C11—C120.000 (2)
C3—C4—C5—C6180.000 (2)N2—C11—C12—C13180.000 (2)
N1—C5—C6—C7180.000 (2)C10—C11—C12—C130.000 (2)
C4—C5—C6—C70.000 (3)C11—C12—C13—C80.000 (2)
C5—C6—C7—C8180.000 (2)C9—C8—C13—C120.000 (2)
C6—C7—C8—C9180.000 (2)C7—C8—C13—C12180.000 (2)
  5 in total

1.  Synthesis and anti-microbial activities of some pyridinium salts with alkoxymethyl hydrophobic group.

Authors:  J Pernak; J Kalewska; H Ksycińska; J Cybulski
Journal:  Eur J Med Chem       Date:  2001 Nov-Dec       Impact factor: 6.514

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis, structure and in vitro antibacterial activities of new hybrid disinfectants quaternary ammonium compounds: pyridinium and quinolinium stilbene benzenesulfonates.

Authors:  Kullapa Chanawanno; Suchada Chantrapromma; Theerasak Anantapong; Akkharawit Kanjana-Opas; Hoong-Kun Fun
Journal:  Eur J Med Chem       Date:  2010-06-17       Impact factor: 6.514

4.  (E)-2-[4-(Dimethyl-amino)-styr-yl]-1-methyl-pyridinium 4-methyl-benzene-sulfonate monohydrate.

Authors:  Suchada Chantrapromma; Kullapa Chanawanno; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-10

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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