Literature DB >> 22091148

4,4'-Dichloro-3,3',5,5'-tetra-methyl-2,2'-[(3aR,7aR/3aS,7aS)-2,3,3a,4,5,6,7,7a-octa-hydro-1H-1,3-benzimidazole-1,3-di-yl)bis-(methyl-ene)]diphenol.

Augusto Rivera, Diego Quiroga, Jaime Ríos-Motta, Karla Fejfarová, Michal Dušek.   

Abstract

In the title compound, C(25)H(32)Cl(2)N(2)O(2), there are two intra-molecular O-H⋯ N hydrogen-bonding inter-actions between the hy-droxy groups on the aromatic rings and the two N atoms of the heterocyclic group. The cyclo-hexane ring adopts a chair conformation and the imidazolidine unit to which it is fused has a twisted envelope conformation. The asymmetric unit comprises one half-mol-ecule which is completed by a twofold rotation axis. A C-H⋯O inter-action is observed in the crystal structure.

Entities:  

Year:  2011        PMID: 22091148      PMCID: PMC3213571          DOI: 10.1107/S1600536811028960

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Rivera et al. (2010 ▶); Cox (1995 ▶). For related quantum-chemical literature, see: Zierkiewicz et al. (2000 ▶, 2003 ▶, 2004 ▶).

Experimental

Crystal data

C25H32Cl2N2O2 M = 463.4 Monoclinic, a = 16.6512 (7) Å b = 9.6962 (3) Å c = 14.4423 (6) Å β = 98.892 (3)° V = 2303.73 (15) Å3 Z = 4 Cu Kα radiation μ = 2.73 mm−1 T = 120 K 0.53 × 0.36 × 0.16 mm

Data collection

Agilent Xcalibur diffractometer with Atlas Gemini detector Absorption correction: analytical (CrysAlis PRO; Agilent, 2010 ▶)’ T min = 0.411, T max = 0.734 32618 measured reflections 2054 independent reflections 1979 reflections with I > 3σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.116 S = 2.54 2054 reflections 144 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: Jana2006 (Petříček et al., 2006 ▶); molecular graphics: Diamond (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: Jana2006. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811028960/go2020sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811028960/go2020Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H32Cl2N2O2F(000) = 984
Mr = 463.4Dx = 1.336 Mg m3
Monoclinic, C2/cMelting point: 498 K
Hall symbol: -C 2ycCu Kα radiation, λ = 1.5418 Å
a = 16.6512 (7) ÅCell parameters from 23197 reflections
b = 9.6962 (3) Åθ = 3.1–67°
c = 14.4423 (6) ŵ = 2.73 mm1
β = 98.892 (3)°T = 120 K
V = 2303.73 (15) Å3Block, colourless
Z = 40.53 × 0.36 × 0.16 mm
Agilent Xcalibur diffractometer with Atlas Gemini detector2054 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source1979 reflections with I > 3σ(I)
mirrorRint = 0.046
Detector resolution: 10.3784 pixels mm-1θmax = 67.2°, θmin = 5.3°
Rotation method data acquisition using ω scansh = −19→19
Absorption correction: analytical (CrysAlis PRO; Agilent, 2010)'k = −11→11
Tmin = 0.411, Tmax = 0.734l = −17→17
32618 measured reflections
Refinement on F261 constraints
R[F2 > 2σ(F2)] = 0.033H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.116Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0016I2)
S = 2.54(Δ/σ)max = 0.010
2054 reflectionsΔρmax = 0.27 e Å3
144 parametersΔρmin = −0.24 e Å3
1 restraint
Experimental. 1H NMR (CDCl3, 400 MHz): δ 1.31 (4H, m), 1.87 (2H, m), 2.08 (2H, m), 2.26 (2H, s, ArCH3), 2.28 (2H, s, ArCH3), 2.36 (2H, m), 2.46 (2H, s, NCH2N), 3.68 (2H, d, 2J = 14.0 Hz, ArCH2N), 4.05 (2H, d, 2J = 14.0 Hz, ArCH2N), 6.57 (2H, s), 11.18 (2H, bs). 13C NMR (CDCl3, 100 MHz): δ 16.7, 21.0, 24.0, 28.9, 53.0, 69.2, 75.8, 116.4, 118.3, 125.4, 133.5, 136.7, 155.9.
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.
xyzUiso*/Ueq
Cl10.76734 (2)−0.07704 (4)0.93216 (3)0.03586 (17)
O10.53003 (6)0.35475 (10)0.97680 (7)0.0322 (3)
N10.55223 (4)0.45810 (9)0.81461 (5)0.0204 (3)
C10.63836 (7)0.27435 (13)0.89563 (9)0.0222 (4)
C20.69590 (8)0.17091 (14)0.88695 (9)0.0241 (4)
C30.69590 (8)0.05287 (14)0.94211 (9)0.0258 (4)
C40.64130 (8)0.03133 (14)1.00472 (9)0.0261 (4)
C50.58507 (9)0.13507 (14)1.01187 (9)0.0264 (4)
C60.58435 (8)0.25638 (14)0.96017 (9)0.0247 (4)
C70.75806 (9)0.18747 (17)0.82207 (11)0.0348 (5)
C80.64127 (10)−0.09641 (15)1.06364 (10)0.0326 (4)
C90.63587 (8)0.40679 (14)0.83881 (9)0.0237 (4)
C100.50.36595 (10)0.750.0261 (5)
C110.54490 (7)0.59416 (13)0.76934 (8)0.0197 (4)
C120.56829 (8)0.71792 (13)0.83144 (9)0.0231 (4)
C130.54453 (8)0.84894 (13)0.77370 (9)0.0267 (4)
H10.5257 (13)0.4090 (18)0.9321 (12)0.0387*
H50.5458290.1228611.0533840.0317*
H7a0.8105540.1603570.8540330.0522*
H7b0.7433540.1304270.7677650.0522*
H7c0.7598280.282180.8031070.0522*
H8a0.694459−0.1101251.0988720.0488*
H8b0.6025−0.086081.1059250.0488*
H8c0.626841−0.1746141.0237720.0488*
H9a0.6687770.4756350.8742860.0284*
H9b0.6582490.3900950.7824370.0284*
H100.5331790.3114860.7152570.0313*
H110.5820250.6044710.7251350.0237*
H12a0.6259370.7174360.8520450.0277*
H12b0.5394380.715240.8840520.0277*
H13a0.579330.8591120.7269830.032*
H13b0.5545530.9284720.8133920.032*
U11U22U33U12U13U23
Cl10.0336 (3)0.0301 (3)0.0424 (3)0.01390 (13)0.00143 (18)−0.00539 (13)
O10.0418 (6)0.0280 (5)0.0313 (5)0.0149 (4)0.0196 (4)0.0086 (4)
N10.0172 (5)0.0215 (5)0.0224 (5)0.0011 (4)0.0029 (4)0.0007 (4)
C10.0201 (6)0.0247 (7)0.0209 (6)0.0021 (5)0.0003 (5)−0.0019 (5)
C20.0202 (6)0.0272 (7)0.0235 (6)0.0018 (5)−0.0006 (5)−0.0065 (5)
C30.0231 (7)0.0245 (6)0.0274 (7)0.0061 (5)−0.0035 (5)−0.0075 (5)
C40.0307 (7)0.0235 (7)0.0217 (6)0.0032 (5)−0.0032 (5)−0.0050 (5)
C50.0321 (7)0.0258 (7)0.0218 (6)0.0046 (5)0.0058 (5)0.0003 (5)
C60.0271 (7)0.0258 (6)0.0217 (6)0.0056 (5)0.0049 (5)−0.0019 (5)
C70.0263 (7)0.0401 (8)0.0393 (8)0.0072 (6)0.0096 (6)−0.0021 (6)
C80.0404 (8)0.0252 (7)0.0301 (7)0.0048 (6)−0.0010 (6)0.0001 (5)
C90.0177 (6)0.0283 (7)0.0253 (6)0.0024 (5)0.0045 (5)0.0008 (5)
C100.0257 (9)0.0216 (9)0.0297 (9)00.0002 (7)0
C110.0196 (7)0.0223 (6)0.0180 (6)−0.0001 (4)0.0052 (5)0.0006 (4)
C120.0234 (6)0.0241 (7)0.0219 (6)−0.0010 (5)0.0037 (5)−0.0006 (5)
C130.0324 (8)0.0225 (6)0.0254 (6)−0.0027 (5)0.0051 (6)−0.0004 (5)
O1—C61.3612 (17)C7—H7c0.96
O1—H10.827 (17)C8—H8a0.96
N1—C91.4694 (15)C8—H8b0.96
N1—C101.4746 (10)C8—H8c0.96
N1—C111.4691 (15)C9—H9a0.96
C1—C21.4059 (19)C9—H9b0.96
C1—C61.4026 (19)C10—H100.96
C1—C91.5211 (19)C10—H10i0.96
C2—C31.3945 (19)C11—C11i1.5132 (16)
C2—C71.508 (2)C11—C121.5127 (17)
C3—C41.394 (2)C11—H110.96
C4—C51.389 (2)C12—C131.5376 (18)
C4—C81.503 (2)C12—H12a0.96
C5—C61.3923 (19)C12—H12b0.96
C5—H50.96C13—C13i1.5341 (18)
C7—H7a0.96C13—H13a0.96
C7—H7b0.96C13—H13b0.96
C6—O1—H1106.8 (14)H8b—C8—H8c109.4716
C9—N1—C10112.95 (8)N1—C9—C1111.10 (10)
C9—N1—C11114.86 (9)N1—C9—H9a109.4708
C10—N1—C11105.20 (7)N1—C9—H9b109.4711
C2—C1—C6119.11 (12)C1—C9—H9a109.4716
C2—C1—C9121.08 (12)C1—C9—H9b109.4713
C6—C1—C9119.77 (12)H9a—C9—H9b107.791
C1—C2—C3118.31 (12)N1—C10—N1i105.41 (8)
C1—C2—C7121.47 (12)N1—C10—H10109.4714
C3—C2—C7120.20 (12)N1—C10—H10i109.471
C2—C3—C4123.46 (13)N1i—C10—H10109.471
C3—C4—C5117.04 (12)N1i—C10—H10i109.4714
C3—C4—C8123.25 (13)H10—C10—H10i113.2497
C5—C4—C8119.71 (13)N1—C11—C11i100.00 (9)
C4—C5—C6121.47 (13)N1—C11—C12116.90 (9)
C4—C5—H5119.2656N1—C11—H11111.8254
C6—C5—H5119.2654C11i—C11—C12111.59 (10)
O1—C6—C1122.83 (12)C11i—C11—H11117.1086
O1—C6—C5116.63 (12)C12—C11—H11100.2818
C1—C6—C5120.53 (13)C11—C12—C13108.22 (10)
C2—C7—H7a109.4708C11—C12—H12a109.4707
C2—C7—H7b109.4713C11—C12—H12b109.4717
C2—C7—H7c109.4707C13—C12—H12a109.4709
H7a—C7—H7b109.4715C13—C12—H12b109.4717
H7a—C7—H7c109.4716H12a—C12—H12b110.6913
H7b—C7—H7c109.4714C12—C13—C13i113.08 (11)
C4—C8—H8a109.4711C12—C13—H13a109.4717
C4—C8—H8b109.4712C12—C13—H13b109.4711
C4—C8—H8c109.471C13i—C13—H13a109.4708
H8a—C8—H8b109.472C13i—C13—H13b109.472
H8a—C8—H8c109.4704H13a—C13—H13b105.6049
?—?—?—??
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.827 (17)1.880 (19)2.6259 (13)149.4 (19)
C12—H12B···O1ii0.962.563.4998 (17)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.827 (17)1.880 (19)2.6259 (13)149.4 (19)
C12—H12B⋯O1i0.962.563.4998 (17)166

Symmetry code: (i) .

  1 in total

1.  4,4'-Dichloro-2,2'-[(3aR,7aR/3aS,7aS)-2,3,3a,4,5,6,7,7a-octa-hydro-1H-1,3-benzimidazole-1,3-di-yl)bis-(methyl-ene)]diphenol.

Authors:  Augusto Rivera; Diego Quiroga; Jaime Ríos-Motta; Michal Dušek; Karla Fejfarová
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-30
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.