Literature DB >> 22091145

(1R,2R,3R,4S,5S)-3-Methyl-8-oxa-bicyclo-[3.2.1]oct-6-ene-2,4-diyl diacetate.

Viktor A Tafeenko1, Leonid A Aslanov, Marina V Proskurnina, Sergei E Sosonyuk, Dmitrii A Khlevin.   

Abstract

The mol-ecule of the title compound, C(12)H(16)O(5), has crystallographically imposed mirror symmetry with the mirror plane passing through the endocyclic O atom and the mid-point of the double bond. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds, forming chains running along the a axis.

Entities:  

Year:  2011        PMID: 22091145      PMCID: PMC3213568          DOI: 10.1107/S1600536811027292

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Compounds containing the 8-oxabicyclo­[3.2.1]octane framework have shown broad utility as chiral building blocks for synthesis of polyketides, see: Coste & Gerber-Lemaire (2005 ▶); Meilert et al. (2003 ▶); Schwenter & Vogel (2001 ▶); Gerber-Lemaire & Vogel (2003 ▶); Gerber & Vogel (1999 ▶, 2001 ▶); Re et al. (2009 ▶); Pascual et al. (2004 ▶); Derwick (1998 ▶). For the inhibitory activity of calystegines and other tropane alkaloids against several glycosidase enzymes, see: Asano et al. (2000 ▶); Drager (2004 ▶). Several 8-oxabicyclo­[3.2.1] octane derivatives possess moderate anti-HIV activity, see: Montana et al. (2009 ▶). For the syntheses of a full set of hybrid d- and l-C-glycosides and thymine polyoxin C starting with the unsaturated 8-oxabicyclo­[3.2.1]octane framework, see: Gethin & Simpkins (1997 ▶); Hoffmann et al. (2001 ▶). For the synthesis of an 8-oxabicyclo­[3.2.1]octane from tetra­chloro­cyclo­propene and furan, see: Batson et al. (2004 ▶). For a synthetic approach to 8-oxabicyclo­[3.2.1]octane derivatives based on the reaction of tetra­chloro­cyclo­propene with furan, see: Law & Tobey (1968 ▶). For structures of related 8-oxabicyclo­[3.2.1]octa­nes, see: Kreiselmeier et al. (2006 ▶); Hoffmann et al. (2001 ▶). For a report of prior research, see: Tafeenko et al. (2009 ▶).

Experimental

Crystal data

C12H16O5 M = 240.25 Orthorhombic, a = 6.8680 (12) Å b = 12.295 (4) Å c = 14.120 (3) Å V = 1192.3 (5) Å3 Z = 4 Ag Kα radiation λ = 0.56085 Å μ = 0.06 mm−1 T = 296 K 0.1 × 0.07 × 0.05 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 1974 measured reflections 1974 independent reflections 1085 reflections with I > 2s(I) 2 standard reflections every 120 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.138 S = 1.02 1974 reflections 91 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2000 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811027292/mw2015sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811027292/mw2015Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H16O5Dx = 1.338 Mg m3
Mr = 240.25Melting point: 428 K
Orthorhombic, PnmaAg Kα radiation, λ = 0.56085 Å
Hall symbol: -P 2ac 2nCell parameters from 25 reflections
a = 6.8680 (12) Åθ = 11–14°
b = 12.295 (4) ŵ = 0.06 mm1
c = 14.120 (3) ÅT = 296 K
V = 1192.3 (5) Å3Prism, colorless
Z = 40.1 × 0.07 × 0.05 mm
F(000) = 512
Enraf–Nonius CAD-4 diffractometerRint = 0.000
Radiation source: fine-focus sealed tubeθmax = 24.0°, θmin = 1.7°
graphiteh = −9→0
non–profiled ω scansk = −17→0
1974 measured reflectionsl = −20→0
1974 independent reflections2 standard reflections every 120 min
1085 reflections with I > 2s(I) intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.138w = 1/[σ2(Fo2) + (0.0492P)2 + 0.2946P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
1974 reflectionsΔρmax = 0.24 e Å3
91 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.031 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.74430 (17)0.55206 (10)0.09878 (9)0.0459 (4)
O21.06414 (18)0.53353 (12)0.12399 (11)0.0604 (4)
O80.6552 (3)0.7500−0.08400 (12)0.0550 (5)
C10.6076 (3)0.65913 (15)−0.02489 (13)0.0479 (5)
H10.58630.5928−0.06190.057*
C20.7802 (2)0.64791 (14)0.04233 (12)0.0409 (4)
H20.89720.63490.00420.049*
C30.8160 (3)0.75000.10391 (17)0.0382 (6)
H30.95520.75000.11930.046*
C60.4243 (3)0.69639 (16)0.02399 (13)0.0510 (5)
H60.32850.65180.04960.061*
C80.7082 (5)0.75000.19833 (19)0.0494 (7)
C90.9005 (3)0.50142 (15)0.13532 (13)0.0451 (4)
C100.8443 (3)0.40349 (17)0.18986 (17)0.0647 (6)
H10A0.95390.35540.19470.097*
H10B0.73950.36690.15810.097*
H10C0.80290.42460.25210.097*
H80.749 (3)0.8125 (16)0.2358 (16)0.071 (7)*
H810.575 (5)0.75000.194 (3)0.092 (12)*
U11U22U33U12U13U23
O10.0411 (6)0.0396 (7)0.0569 (8)−0.0008 (6)0.0002 (6)0.0067 (6)
O20.0422 (8)0.0569 (9)0.0820 (10)0.0018 (7)0.0016 (7)0.0071 (8)
O80.0746 (13)0.0542 (11)0.0362 (9)0.000−0.0022 (10)0.000
C10.0580 (11)0.0423 (10)0.0434 (9)−0.0048 (9)−0.0061 (9)−0.0032 (8)
C20.0420 (9)0.0387 (9)0.0420 (9)−0.0002 (7)0.0056 (8)0.0006 (8)
C30.0330 (11)0.0392 (13)0.0425 (13)0.0000.0001 (10)0.000
C60.0403 (9)0.0602 (11)0.0524 (11)−0.0044 (8)−0.0128 (8)0.0003 (10)
C80.0507 (17)0.0601 (18)0.0374 (14)0.0000.0003 (13)0.000
C90.0494 (10)0.0372 (9)0.0487 (10)0.0021 (9)0.0002 (8)−0.0051 (9)
C100.0650 (13)0.0516 (12)0.0775 (15)−0.0036 (11)−0.0095 (12)0.0119 (11)
O1—C91.344 (2)C3—C2i1.547 (2)
O1—C21.444 (2)C3—H30.9800
O2—C91.202 (2)C6—C6i1.318 (4)
O8—C11.432 (2)C6—H60.9300
C1—C61.507 (2)C8—H80.97 (2)
C1—C21.525 (2)C8—H810.92 (4)
C1—H10.9800C9—C101.481 (3)
C2—C31.547 (2)C10—H10A0.9600
C2—H20.9800C10—H10B0.9600
C3—C81.525 (4)C10—H10C0.9600
C9—O1—C2116.98 (13)C2—C3—H3106.2
C1i—O8—C1102.51 (19)C2i—C3—H3106.2
O8—C1—C6102.74 (16)C6i—C6—C1107.70 (10)
O8—C1—C2104.80 (15)C6i—C6—H6126.1
C6—C1—C2113.07 (14)C1—C6—H6126.1
O8—C1—H1111.9C3—C8—H8109.7 (13)
C6—C1—H1111.9C3—C8—H81115 (2)
C2—C1—H1111.9H8—C8—H81108.8 (18)
O1—C2—C1106.53 (14)O2—C9—O1122.91 (17)
O1—C2—C3112.28 (14)O2—C9—C10125.48 (18)
C1—C2—C3113.59 (15)O1—C9—C10111.60 (16)
O1—C2—H2108.1C9—C10—H10A109.5
C1—C2—H2108.1C9—C10—H10B109.5
C3—C2—H2108.1H10A—C10—H10B109.5
C8—C3—C2114.47 (13)C9—C10—H10C109.5
C8—C3—C2i114.47 (13)H10A—C10—H10C109.5
C2—C3—C2i108.50 (19)H10B—C10—H10C109.5
C8—C3—H3106.2
C1i—O8—C1—C638.7 (2)O1—C2—C3—C8−30.9 (2)
C1i—O8—C1—C2−79.64 (19)C1—C2—C3—C890.0 (2)
C9—O1—C2—C1154.76 (15)O1—C2—C3—C2i−160.12 (11)
C9—O1—C2—C3−80.30 (19)C1—C2—C3—C2i−39.2 (2)
O8—C1—C2—O1−175.93 (13)O8—C1—C6—C6i−24.28 (13)
C6—C1—C2—O172.93 (19)C2—C1—C6—C6i88.12 (14)
O8—C1—C2—C359.93 (19)C2—O1—C9—O21.2 (3)
C6—C1—C2—C3−51.2 (2)C2—O1—C9—C10−178.85 (15)
D—H···AD—HH···AD···AD—H···A
C6—H6···O2ii0.932.553.482 (2)178
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O2i0.932.553.482 (2)178

Symmetry code: (i) .

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