Literature DB >> 22091140

21-Hy-droxy-pregna-1,4-diene-3,20-dione.

S Yousuf1, M Bibi, M I Choudhary.   

Abstract

The title compound, C(21)H(28)O(3), is a fungal transformed metabolite of decoxycorticosterone acetate, consisting of four fused rings A, B, C and D. Ring A is nearly planar, with a maximum deviation of 0.010 (3) Å from the least-squares plane, while the trans-fused rings B and C adopt chair conformations. The five-membered ring D is in an envelope conformation. The orientation of the side chain is stabilized by an intramolecular O-H⋯O hydrogen bond. In the crystal, adjecent mol-ecules are linked by C-H⋯O hydrogen bonds into extended zigzag chains along the a axis.

Entities:  

Year:  2011        PMID: 22091140      PMCID: PMC3213563          DOI: 10.1107/S1600536811028674

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was previously reported as the transformed metabolite of 11-de­oxy­corticosterone, see: Holland et al. (1995 ▶). For the crystal structure of the closely related compound corticosterone, see: Campsteyn et al. (1973 ▶) and for that of of 11-de­oxy­corticosterone, see: Dideberg et al. (1973 ▶); Dey et al. (1999 ▶).

Experimental

Crystal data

C21H28O3 M = 328.43 Monoclinic, a = 7.5882 (9) Å b = 11.3506 (13) Å c = 10.5462 (12) Å β = 102.258 (2)° V = 887.64 (18) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.36 × 0.13 × 0.12 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.972, T max = 0.990 5287 measured reflections 1739 independent reflections 1467 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.107 S = 0.95 1739 reflections 219 parameters 1 restraint H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.13 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811028674/zb2014sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811028674/zb2014Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H28O3F(000) = 356
Mr = 328.43Dx = 1.229 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 7.5882 (9) ÅCell parameters from 1378 reflections
b = 11.3506 (13) Åθ = 2.0–25.5°
c = 10.5462 (12) ŵ = 0.08 mm1
β = 102.258 (2)°T = 298 K
V = 887.64 (18) Å3Block, colourless
Z = 20.36 × 0.13 × 0.12 mm
Bruker SMART APEX CCD area-detector diffractometer1739 independent reflections
Radiation source: fine-focus sealed tube1467 reflections with I > 2σ(I)
graphiteRint = 0.026
Detector resolution: 8.33 pixels mm-1θmax = 25.5°, θmin = 2.0°
ω scanh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2000)k = −13→13
Tmin = 0.972, Tmax = 0.990l = −8→12
5287 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H-atom parameters constrained
S = 0.95w = 1/[σ2(Fo2) + (0.0661P)2 + 0.090P] where P = (Fo2 + 2Fc2)/3
1739 reflections(Δ/σ)max < 0.001
219 parametersΔρmax = 0.14 e Å3
1 restraintΔρmin = −0.13 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5573 (4)0.6466 (3)0.9017 (2)0.0945 (9)
O20.2867 (4)0.3644 (3)−0.2454 (2)0.0913 (9)
H1O20.18950.4096−0.27880.110*
O30.0016 (3)0.4543 (3)−0.1825 (2)0.0826 (9)
C10.5718 (4)0.6862 (3)0.5714 (3)0.0618 (9)
H1A0.65790.68700.52030.074*
C20.6286 (4)0.6644 (4)0.6965 (3)0.0685 (10)
H2A0.75040.64970.72890.082*
C30.5054 (4)0.6630 (3)0.7843 (3)0.0629 (8)
C40.3171 (4)0.6834 (3)0.7260 (3)0.0567 (8)
H4A0.23380.68200.77910.068*
C50.2577 (4)0.7042 (3)0.5998 (3)0.0454 (7)
C60.0594 (4)0.7164 (3)0.5427 (3)0.0587 (8)
H6A0.03510.79270.50110.070*
H6B−0.00860.71060.61070.070*
C70.0023 (4)0.6184 (3)0.4432 (3)0.0543 (8)
H7A0.01650.54280.48700.065*
H7B−0.12410.62790.40270.065*
C80.1135 (3)0.6197 (2)0.3392 (2)0.0374 (6)
H8A0.09150.69470.29240.045*
C90.3169 (3)0.6114 (2)0.4003 (2)0.0391 (6)
H9A0.33450.53600.44650.047*
C100.3807 (3)0.7096 (3)0.5053 (2)0.0441 (7)
C110.4304 (4)0.6053 (3)0.2956 (3)0.0520 (8)
H11A0.42620.68140.25320.062*
H11B0.55490.58980.33730.062*
C120.3677 (3)0.5108 (3)0.1926 (3)0.0496 (7)
H12A0.43740.51690.12570.059*
H12B0.38890.43350.23200.059*
C130.1683 (3)0.5243 (2)0.1315 (2)0.0374 (6)
C140.0637 (3)0.5206 (2)0.2418 (2)0.0371 (6)
H14A0.09890.44720.28940.045*
C15−0.1335 (4)0.5052 (3)0.1719 (3)0.0515 (7)
H15A−0.20190.46570.22730.062*
H15B−0.18890.58090.14600.062*
C16−0.1246 (4)0.4299 (3)0.0534 (3)0.0572 (8)
H16A−0.19280.4667−0.02480.069*
H16B−0.17480.35240.06170.069*
C170.0763 (3)0.4196 (3)0.0464 (2)0.0442 (6)
H17A0.12330.34600.08930.053*
C180.1330 (5)0.6381 (3)0.0533 (3)0.0561 (8)
H18A0.16030.70440.11060.084*
H18B0.00860.64120.00940.084*
H18C0.20800.6403−0.00940.084*
C190.3717 (5)0.8342 (3)0.4439 (3)0.0665 (9)
H19A0.39050.89250.51130.100*
H19B0.25540.84570.38810.100*
H19C0.46350.84150.39430.100*
C200.1086 (4)0.4173 (3)−0.0904 (3)0.0487 (7)
C210.2832 (5)0.3690 (4)−0.1131 (3)0.0672 (9)
H22A0.38170.4181−0.06850.081*
H22B0.30130.2903−0.07670.081*
U11U22U33U12U13U23
O10.104 (2)0.128 (2)0.0422 (12)0.0043 (19)−0.0030 (12)0.0045 (16)
O20.1074 (19)0.113 (2)0.0626 (15)0.0171 (18)0.0394 (14)−0.0185 (16)
O30.0769 (16)0.123 (2)0.0423 (11)0.0197 (15)0.0010 (11)−0.0080 (13)
C10.0358 (13)0.100 (3)0.0503 (17)−0.0076 (16)0.0113 (13)−0.0282 (18)
C20.0459 (16)0.100 (3)0.0544 (18)0.0067 (18)−0.0006 (15)−0.022 (2)
C30.072 (2)0.072 (2)0.0398 (15)−0.0014 (18)0.0019 (15)−0.0067 (16)
C40.0578 (16)0.079 (2)0.0381 (14)−0.0107 (16)0.0206 (13)−0.0129 (15)
C50.0430 (13)0.0529 (17)0.0418 (14)−0.0062 (12)0.0127 (12)−0.0123 (13)
C60.0418 (14)0.086 (2)0.0511 (17)0.0021 (15)0.0167 (13)−0.0210 (17)
C70.0346 (13)0.079 (2)0.0510 (16)−0.0073 (14)0.0138 (12)−0.0163 (16)
C80.0332 (12)0.0424 (14)0.0374 (12)0.0011 (11)0.0091 (10)−0.0030 (11)
C90.0343 (12)0.0466 (14)0.0378 (13)−0.0019 (11)0.0111 (11)−0.0039 (12)
C100.0390 (13)0.0617 (18)0.0338 (13)−0.0067 (12)0.0130 (11)−0.0076 (13)
C110.0353 (13)0.081 (2)0.0430 (14)−0.0117 (13)0.0161 (12)−0.0176 (15)
C120.0365 (14)0.072 (2)0.0435 (14)0.0019 (13)0.0164 (12)−0.0132 (15)
C130.0384 (13)0.0406 (14)0.0347 (12)0.0018 (11)0.0115 (11)−0.0028 (12)
C140.0350 (13)0.0384 (13)0.0383 (13)−0.0001 (10)0.0086 (11)0.0010 (11)
C150.0371 (14)0.0630 (19)0.0541 (16)−0.0042 (13)0.0093 (12)−0.0162 (15)
C160.0489 (15)0.0660 (19)0.0572 (17)−0.0109 (15)0.0126 (14)−0.0192 (16)
C170.0481 (14)0.0418 (14)0.0423 (14)−0.0010 (13)0.0089 (12)−0.0069 (13)
C180.083 (2)0.0443 (16)0.0436 (15)−0.0050 (15)0.0185 (14)−0.0006 (13)
C190.085 (2)0.061 (2)0.0556 (19)−0.0246 (18)0.0177 (17)−0.0115 (16)
C200.0550 (15)0.0485 (16)0.0416 (14)−0.0026 (14)0.0079 (13)−0.0127 (13)
C210.075 (2)0.074 (2)0.0573 (19)0.0070 (18)0.0232 (16)−0.0122 (17)
O1—C31.231 (4)C11—H11A0.9700
O2—C211.402 (4)C11—H11B0.9700
O2—H1O20.9067C12—C131.522 (4)
O3—C201.202 (3)C12—H12A0.9700
C1—C21.321 (4)C12—H12B0.9700
C1—C101.493 (4)C13—C181.525 (4)
C1—H1A0.9300C13—C141.542 (3)
C2—C31.450 (5)C13—C171.562 (4)
C2—H2A0.9300C14—C151.531 (3)
C3—C41.450 (4)C14—H14A0.9800
C4—C51.332 (4)C15—C161.528 (4)
C4—H4A0.9300C15—H15A0.9700
C5—C61.504 (4)C15—H15B0.9700
C5—C101.505 (4)C16—C171.546 (4)
C6—C71.527 (4)C16—H16A0.9700
C6—H6A0.9700C16—H16B0.9700
C6—H6B0.9700C17—C201.514 (4)
C7—C81.519 (4)C17—H17A0.9800
C7—H7A0.9700C18—H18A0.9600
C7—H7B0.9700C18—H18B0.9600
C8—C141.517 (3)C18—H18C0.9600
C8—C91.544 (3)C19—H19A0.9600
C8—H8A0.9800C19—H19B0.9600
C9—C111.539 (3)C19—H19C0.9600
C9—C101.574 (4)C20—C211.500 (4)
C9—H9A0.9800C21—H22A0.9700
C10—C191.551 (5)C21—H22B0.9700
C11—C121.528 (4)
C21—O2—H1O2100.3C13—C12—H12B109.4
C2—C1—C10125.3 (3)C11—C12—H12B109.4
C2—C1—H1A117.4H12A—C12—H12B108.0
C10—C1—H1A117.4C12—C13—C18111.0 (2)
C1—C2—C3121.5 (3)C12—C13—C14107.63 (19)
C1—C2—H2A119.2C18—C13—C14111.8 (2)
C3—C2—H2A119.2C12—C13—C17116.7 (2)
O1—C3—C2122.2 (3)C18—C13—C17109.15 (19)
O1—C3—C4121.8 (3)C14—C13—C17100.0 (2)
C2—C3—C4116.0 (2)C8—C14—C15119.2 (2)
C5—C4—C3123.1 (3)C8—C14—C13113.4 (2)
C5—C4—H4A118.4C15—C14—C13104.29 (19)
C3—C4—H4A118.4C8—C14—H14A106.4
C4—C5—C6120.9 (3)C15—C14—H14A106.4
C4—C5—C10122.9 (2)C13—C14—H14A106.4
C6—C5—C10116.1 (2)C16—C15—C14104.4 (2)
C5—C6—C7108.8 (2)C16—C15—H15A110.9
C5—C6—H6A109.9C14—C15—H15A110.9
C7—C6—H6A109.9C16—C15—H15B110.9
C5—C6—H6B109.9C14—C15—H15B110.9
C7—C6—H6B109.9H15A—C15—H15B108.9
H6A—C6—H6B108.3C15—C16—C17107.3 (2)
C8—C7—C6111.6 (2)C15—C16—H16A110.3
C8—C7—H7A109.3C17—C16—H16A110.3
C6—C7—H7A109.3C15—C16—H16B110.3
C8—C7—H7B109.3C17—C16—H16B110.3
C6—C7—H7B109.3H16A—C16—H16B108.5
H7A—C7—H7B108.0C20—C17—C16114.0 (2)
C14—C8—C7112.6 (2)C20—C17—C13114.7 (2)
C14—C8—C9108.66 (19)C16—C17—C13103.9 (2)
C7—C8—C9111.0 (2)C20—C17—H17A108.0
C14—C8—H8A108.1C16—C17—H17A108.0
C7—C8—H8A108.1C13—C17—H17A108.0
C9—C8—H8A108.1C13—C18—H18A109.5
C11—C9—C8111.5 (2)C13—C18—H18B109.5
C11—C9—C10113.7 (2)H18A—C18—H18B109.5
C8—C9—C10112.4 (2)C13—C18—H18C109.5
C11—C9—H9A106.2H18A—C18—H18C109.5
C8—C9—H9A106.2H18B—C18—H18C109.5
C10—C9—H9A106.2C10—C19—H19A109.5
C1—C10—C5111.2 (2)C10—C19—H19B109.5
C1—C10—C19108.0 (3)H19A—C19—H19B109.5
C5—C10—C19109.6 (2)C10—C19—H19C109.5
C1—C10—C9109.0 (2)H19A—C19—H19C109.5
C5—C10—C9107.2 (2)H19B—C19—H19C109.5
C19—C10—C9111.9 (2)O3—C20—C21117.8 (3)
C12—C11—C9113.8 (2)O3—C20—C17123.1 (3)
C12—C11—H11A108.8C21—C20—C17119.1 (3)
C9—C11—H11A108.8O2—C21—C20112.2 (3)
C12—C11—H11B108.8O2—C21—H22A109.2
C9—C11—H11B108.8C20—C21—H22A109.2
H11A—C11—H11B107.7O2—C21—H22B109.2
C13—C12—C11111.2 (2)C20—C21—H22B109.2
C13—C12—H12A109.4H22A—C21—H22B107.9
C11—C12—H12A109.4
C10—C1—C2—C3−0.9 (6)C10—C9—C11—C12−179.4 (2)
C1—C2—C3—O1−177.6 (4)C9—C11—C12—C1353.7 (3)
C1—C2—C3—C41.6 (6)C11—C12—C13—C1866.5 (3)
O1—C3—C4—C5178.4 (4)C11—C12—C13—C14−56.2 (3)
C2—C3—C4—C5−0.9 (5)C11—C12—C13—C17−167.6 (2)
C3—C4—C5—C6175.7 (3)C7—C8—C14—C1553.7 (3)
C3—C4—C5—C10−0.6 (5)C9—C8—C14—C15177.0 (2)
C4—C5—C6—C7−117.8 (3)C7—C8—C14—C13177.0 (2)
C10—C5—C6—C758.7 (4)C9—C8—C14—C13−59.6 (3)
C5—C6—C7—C8−56.2 (3)C12—C13—C14—C861.7 (3)
C6—C7—C8—C14178.0 (2)C18—C13—C14—C8−60.5 (3)
C6—C7—C8—C956.0 (3)C17—C13—C14—C8−175.93 (19)
C14—C8—C9—C1152.3 (3)C12—C13—C14—C15−167.1 (2)
C7—C8—C9—C11176.6 (2)C18—C13—C14—C1570.7 (3)
C14—C8—C9—C10−178.8 (2)C17—C13—C14—C15−44.7 (2)
C7—C8—C9—C10−54.4 (3)C8—C14—C15—C16161.2 (3)
C2—C1—C10—C5−0.5 (5)C13—C14—C15—C1633.4 (3)
C2—C1—C10—C19119.7 (4)C14—C15—C16—C17−8.4 (3)
C2—C1—C10—C9−118.5 (4)C15—C16—C17—C20−144.8 (3)
C4—C5—C10—C11.3 (4)C15—C16—C17—C13−19.3 (3)
C6—C5—C10—C1−175.1 (3)C12—C13—C17—C20−80.5 (3)
C4—C5—C10—C19−118.0 (3)C18—C13—C17—C2046.4 (3)
C6—C5—C10—C1965.5 (3)C14—C13—C17—C20163.8 (2)
C4—C5—C10—C9120.4 (3)C12—C13—C17—C16154.4 (2)
C6—C5—C10—C9−56.1 (3)C18—C13—C17—C16−78.8 (3)
C11—C9—C10—C1−59.5 (3)C14—C13—C17—C1638.7 (3)
C8—C9—C10—C1172.8 (2)C16—C17—C20—O321.1 (4)
C11—C9—C10—C5−179.9 (2)C13—C17—C20—O3−98.5 (3)
C8—C9—C10—C552.3 (3)C16—C17—C20—C21−160.2 (3)
C11—C9—C10—C1959.9 (3)C13—C17—C20—C2180.2 (3)
C8—C9—C10—C19−67.8 (3)O3—C20—C21—O2−5.9 (5)
C8—C9—C11—C12−51.2 (3)C17—C20—C21—O2175.3 (3)
D—H···AD—HH···AD···AD—H···A
O2—H1O2···O30.911.982.602 (4)124
C21—H22B···O1i0.972.533.415 (5)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H1O2⋯O30.911.982.602 (4)124
C21—H22B⋯O1i0.972.533.415 (5)152

Symmetry code: (i) .

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