Literature DB >> 22091128

4,6-Dimethyl-2-(naphthalen-1-yl)pyrimidine.

Xiao-Xue Zhang1, Deng-Yong Zhu, Xin-Qi Hao, Xin-Ming Dong, Mao-Ping Song.   

Abstract

The asymmetric unit of the title compound, C(16)H(14)N(2), contains two independent mol-ecules in which the dihedral angles between the pyrimidine and naphthaline rings are 38.20 (5) and 39.35 (5)°. Inter-molecular C-H⋯π contacts and π-π stacking inter-actions [centroid-centroid distances = 3.766 (1) and 3.792 (1) Å] are present in the crystal structure.

Entities:  

Year:  2011        PMID: 22091128      PMCID: PMC3213551          DOI: 10.1107/S1600536811027875

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For cyclo­metalated Ir(III) complexes, see: Chen et al. (2010 ▶); Talarico et al. (2010 ▶); Xu et al. (2011 ▶); Yang et al. (2006 ▶). For the synthesis, see: Wang et al. (2011 ▶).

Experimental

Crystal data

C16H14N2 M = 234.29 Monoclinic, a = 14.9022 (18) Å b = 11.4756 (14) Å c = 15.9499 (19) Å β = 111.028 (1)° V = 2546.0 (5) Å3 Z = 8 Mo Kα radiation μ = 0.07 mm−1 T = 296 K 0.50 × 0.37 × 0.29 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.965, T max = 0.979 18638 measured reflections 4733 independent reflections 3442 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.129 S = 1.06 4733 reflections 329 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811027875/si2364sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811027875/si2364Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811027875/si2364Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14N2F(000) = 992
Mr = 234.29Dx = 1.222 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 14.9022 (18) ÅCell parameters from 5588 reflections
b = 11.4756 (14) Åθ = 2.4–27.4°
c = 15.9499 (19) ŵ = 0.07 mm1
β = 111.028 (1)°T = 296 K
V = 2546.0 (5) Å3Block, colourless
Z = 80.50 × 0.37 × 0.29 mm
Bruker SMART APEX CCD area-detector diffractometer4733 independent reflections
Radiation source: fine-focus sealed tube3442 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 25.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −18→18
Tmin = 0.965, Tmax = 0.979k = −13→13
18638 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0523P)2 + 0.8594P] where P = (Fo2 + 2Fc2)/3
4733 reflections(Δ/σ)max < 0.001
329 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.33022 (12)0.56804 (15)0.19201 (11)0.0391 (4)
C20.28518 (12)0.54003 (15)0.25537 (11)0.0382 (4)
C30.31319 (13)0.58798 (17)0.34283 (12)0.0466 (5)
H30.36320.64170.36140.056*
C40.26816 (14)0.55681 (19)0.40020 (13)0.0545 (5)
H40.28820.58910.45750.065*
C50.19230 (15)0.47692 (19)0.37416 (14)0.0574 (5)
H50.16310.45490.41440.069*
C60.16151 (14)0.43166 (18)0.29020 (14)0.0535 (5)
H60.11020.37970.27290.064*
C70.20588 (12)0.46173 (16)0.22806 (12)0.0429 (4)
C80.17279 (13)0.41556 (17)0.14022 (13)0.0493 (5)
H80.12190.36300.12300.059*
C90.21425 (13)0.44683 (17)0.08061 (13)0.0507 (5)
H90.19050.41750.02240.061*
C100.29303 (12)0.52348 (16)0.10659 (12)0.0453 (4)
H100.32060.54450.06490.054*
C110.41918 (12)0.63937 (15)0.21483 (12)0.0399 (4)
C120.50852 (13)0.76663 (16)0.16641 (13)0.0466 (4)
C130.58104 (13)0.75808 (17)0.24906 (13)0.0481 (5)
H130.63790.79950.26120.058*
C140.56827 (13)0.68750 (16)0.31349 (12)0.0450 (4)
C150.51631 (16)0.8421 (2)0.09295 (15)0.0643 (6)
H15A0.48030.80790.03580.097*
H15B0.58260.84890.09910.097*
H15C0.49100.91800.09680.097*
C160.64365 (14)0.67278 (19)0.40496 (13)0.0588 (5)
H16A0.63430.73000.44500.088*
H16B0.70610.68280.40140.088*
H16C0.63880.59620.42710.088*
C170.12658 (11)0.06318 (15)0.19754 (11)0.0357 (4)
C180.09762 (13)0.01305 (17)0.11404 (11)0.0435 (4)
H180.03680.03040.07290.052*
C190.15642 (13)−0.06341 (16)0.08848 (12)0.0454 (4)
H190.1345−0.09620.03130.054*
C200.24584 (13)−0.08964 (16)0.14757 (12)0.0440 (4)
H200.2842−0.14200.13110.053*
C210.28081 (12)−0.03786 (15)0.23378 (11)0.0381 (4)
C220.37491 (13)−0.06205 (18)0.29471 (13)0.0501 (5)
H220.4136−0.11400.27830.060*
C230.40930 (13)−0.0107 (2)0.37641 (13)0.0561 (5)
H230.4709−0.02830.41590.067*
C240.35244 (13)0.06895 (18)0.40169 (12)0.0500 (5)
H240.37710.10480.45760.060*
C250.26154 (12)0.09449 (16)0.34545 (11)0.0413 (4)
H250.22500.14790.36340.050*
C260.22168 (11)0.04068 (14)0.25978 (10)0.0345 (4)
C270.05443 (11)0.13401 (15)0.21966 (11)0.0360 (4)
C28−0.01736 (12)0.18418 (16)0.31890 (12)0.0425 (4)
C29−0.08211 (12)0.25082 (16)0.25319 (12)0.0432 (4)
H29−0.13050.29110.26490.052*
C30−0.07448 (12)0.25720 (15)0.16983 (12)0.0407 (4)
C31−0.02058 (15)0.1730 (2)0.41097 (13)0.0608 (6)
H31A0.00230.09730.43470.091*
H31B−0.08550.18280.40820.091*
H31C0.01950.23170.44930.091*
C32−0.14053 (14)0.33086 (18)0.09602 (13)0.0548 (5)
H32A−0.11430.40790.09980.082*
H32B−0.20230.33480.10190.082*
H32C−0.14730.29710.03900.082*
N10.48627 (10)0.62722 (13)0.29660 (10)0.0437 (4)
N20.42607 (10)0.70672 (13)0.14848 (10)0.0443 (4)
N3−0.00560 (10)0.19787 (12)0.15203 (9)0.0395 (3)
N40.05243 (10)0.12487 (13)0.30227 (9)0.0406 (4)
U11U22U33U12U13U23
C10.0340 (9)0.0402 (10)0.0421 (10)0.0027 (7)0.0125 (7)0.0004 (8)
C20.0324 (8)0.0386 (10)0.0423 (10)0.0043 (7)0.0119 (7)0.0018 (7)
C30.0382 (9)0.0543 (12)0.0478 (11)−0.0007 (8)0.0160 (8)−0.0062 (9)
C40.0525 (12)0.0654 (13)0.0480 (11)0.0035 (10)0.0212 (9)−0.0036 (10)
C50.0562 (12)0.0655 (14)0.0593 (13)−0.0010 (10)0.0315 (10)0.0055 (11)
C60.0465 (11)0.0546 (12)0.0631 (13)−0.0071 (9)0.0240 (10)0.0014 (10)
C70.0358 (9)0.0429 (10)0.0493 (11)0.0013 (8)0.0145 (8)0.0025 (8)
C80.0402 (10)0.0505 (12)0.0530 (11)−0.0065 (8)0.0118 (9)−0.0033 (9)
C90.0485 (11)0.0533 (12)0.0447 (11)−0.0035 (9)0.0100 (9)−0.0068 (9)
C100.0433 (10)0.0496 (11)0.0437 (10)0.0003 (8)0.0165 (8)0.0014 (8)
C110.0382 (9)0.0386 (10)0.0453 (10)0.0041 (7)0.0178 (8)−0.0016 (8)
C120.0456 (10)0.0429 (11)0.0573 (12)0.0013 (8)0.0257 (9)−0.0002 (9)
C130.0406 (10)0.0461 (11)0.0606 (12)−0.0068 (8)0.0220 (9)−0.0064 (9)
C140.0396 (9)0.0449 (11)0.0516 (11)0.0005 (8)0.0179 (8)−0.0064 (9)
C150.0676 (14)0.0621 (14)0.0678 (14)−0.0064 (11)0.0298 (11)0.0121 (11)
C160.0483 (11)0.0662 (14)0.0560 (12)−0.0050 (10)0.0115 (9)−0.0046 (10)
C170.0349 (9)0.0390 (9)0.0348 (9)0.0030 (7)0.0143 (7)0.0021 (7)
C180.0406 (9)0.0518 (11)0.0356 (9)0.0068 (8)0.0108 (8)−0.0008 (8)
C190.0510 (11)0.0490 (11)0.0377 (10)0.0040 (9)0.0179 (8)−0.0056 (8)
C200.0470 (10)0.0450 (11)0.0468 (10)0.0067 (8)0.0251 (8)−0.0020 (8)
C210.0360 (9)0.0390 (10)0.0433 (10)0.0033 (7)0.0190 (8)0.0053 (7)
C220.0404 (10)0.0549 (12)0.0557 (12)0.0135 (9)0.0182 (9)0.0046 (9)
C230.0373 (10)0.0699 (14)0.0528 (12)0.0095 (10)0.0061 (9)0.0055 (10)
C240.0425 (10)0.0611 (13)0.0412 (10)−0.0032 (9)0.0086 (8)−0.0025 (9)
C250.0380 (9)0.0453 (10)0.0418 (10)0.0000 (8)0.0159 (8)−0.0017 (8)
C260.0340 (8)0.0365 (9)0.0366 (9)0.0012 (7)0.0169 (7)0.0035 (7)
C270.0333 (8)0.0366 (9)0.0375 (9)0.0001 (7)0.0121 (7)−0.0011 (7)
C280.0379 (9)0.0501 (11)0.0412 (10)0.0036 (8)0.0163 (8)−0.0003 (8)
C290.0380 (9)0.0469 (11)0.0458 (10)0.0099 (8)0.0165 (8)−0.0017 (8)
C300.0381 (9)0.0391 (10)0.0435 (10)0.0044 (8)0.0129 (8)−0.0002 (8)
C310.0629 (13)0.0800 (16)0.0458 (11)0.0202 (11)0.0271 (10)0.0076 (10)
C320.0602 (12)0.0546 (12)0.0471 (11)0.0209 (10)0.0162 (9)0.0075 (9)
N10.0383 (8)0.0447 (9)0.0482 (9)−0.0011 (7)0.0158 (7)−0.0022 (7)
N20.0426 (8)0.0431 (9)0.0499 (9)0.0018 (7)0.0200 (7)0.0003 (7)
N30.0381 (8)0.0402 (8)0.0399 (8)0.0045 (6)0.0136 (6)0.0015 (6)
N40.0377 (8)0.0465 (9)0.0392 (8)0.0066 (7)0.0159 (6)0.0019 (7)
C1—C101.372 (2)C17—C181.371 (2)
C1—C21.436 (2)C17—C261.432 (2)
C1—C111.488 (2)C17—C271.488 (2)
C2—C31.416 (2)C18—C191.400 (2)
C2—C71.423 (2)C18—H180.9300
C3—C41.362 (3)C19—C201.361 (2)
C3—H30.9300C19—H190.9300
C4—C51.398 (3)C20—C211.415 (2)
C4—H40.9300C20—H200.9300
C5—C61.354 (3)C21—C221.418 (2)
C5—H50.9300C21—C261.422 (2)
C6—C71.417 (3)C22—C231.353 (3)
C6—H60.9300C22—H220.9300
C7—C81.411 (3)C23—C241.400 (3)
C8—C91.355 (3)C23—H230.9300
C8—H80.9300C24—C251.361 (2)
C9—C101.405 (3)C24—H240.9300
C9—H90.9300C25—C261.421 (2)
C10—H100.9300C25—H250.9300
C11—N11.336 (2)C27—N41.333 (2)
C11—N21.344 (2)C27—N31.345 (2)
C12—N21.346 (2)C28—N41.347 (2)
C12—C131.376 (3)C28—C291.374 (2)
C12—C151.495 (3)C28—C311.492 (2)
C13—C141.374 (3)C29—C301.376 (2)
C13—H130.9300C29—H290.9300
C14—N11.345 (2)C30—N31.344 (2)
C14—C161.498 (3)C30—C321.496 (2)
C15—H15A0.9600C31—H31A0.9600
C15—H15B0.9600C31—H31B0.9600
C15—H15C0.9600C31—H31C0.9600
C16—H16A0.9600C32—H32A0.9600
C16—H16B0.9600C32—H32B0.9600
C16—H16C0.9600C32—H32C0.9600
C10—C1—C2119.41 (16)C26—C17—C27123.63 (14)
C10—C1—C11117.06 (15)C17—C18—C19122.29 (16)
C2—C1—C11123.47 (15)C17—C18—H18118.9
C3—C2—C7117.77 (16)C19—C18—H18118.9
C3—C2—C1124.01 (16)C20—C19—C18119.77 (16)
C7—C2—C1118.20 (16)C20—C19—H19120.1
C4—C3—C2121.16 (18)C18—C19—H19120.1
C4—C3—H3119.4C19—C20—C21120.51 (16)
C2—C3—H3119.4C19—C20—H20119.7
C3—C4—C5120.89 (19)C21—C20—H20119.7
C3—C4—H4119.6C20—C21—C22120.85 (16)
C5—C4—H4119.6C20—C21—C26119.93 (15)
C6—C5—C4119.76 (18)C22—C21—C26119.22 (16)
C6—C5—H5120.1C23—C22—C21120.97 (17)
C4—C5—H5120.1C23—C22—H22119.5
C5—C6—C7121.38 (19)C21—C22—H22119.5
C5—C6—H6119.3C22—C23—C24120.18 (17)
C7—C6—H6119.3C22—C23—H23119.9
C8—C7—C6121.22 (17)C24—C23—H23119.9
C8—C7—C2119.81 (16)C25—C24—C23120.84 (18)
C6—C7—C2118.97 (17)C25—C24—H24119.6
C9—C8—C7120.82 (17)C23—C24—H24119.6
C9—C8—H8119.6C24—C25—C26120.92 (17)
C7—C8—H8119.6C24—C25—H25119.5
C8—C9—C10120.13 (18)C26—C25—H25119.5
C8—C9—H9119.9C25—C26—C21117.83 (15)
C10—C9—H9119.9C25—C26—C17123.81 (15)
C1—C10—C9121.54 (17)C21—C26—C17118.34 (15)
C1—C10—H10119.2N4—C27—N3126.26 (15)
C9—C10—H10119.2N4—C27—C17117.76 (14)
N1—C11—N2125.94 (16)N3—C27—C17115.91 (14)
N1—C11—C1118.07 (15)N4—C28—C29120.77 (16)
N2—C11—C1115.91 (15)N4—C28—C31116.77 (16)
N2—C12—C13120.69 (17)C29—C28—C31122.47 (16)
N2—C12—C15116.82 (17)C28—C29—C30119.18 (16)
C13—C12—C15122.50 (18)C28—C29—H29120.4
C14—C13—C12119.12 (17)C30—C29—H29120.4
C14—C13—H13120.4N3—C30—C29120.73 (16)
C12—C13—H13120.4N3—C30—C32117.18 (16)
N1—C14—C13120.87 (17)C29—C30—C32122.09 (16)
N1—C14—C16116.57 (17)C28—C31—H31A109.5
C13—C14—C16122.56 (17)C28—C31—H31B109.5
C12—C15—H15A109.5H31A—C31—H31B109.5
C12—C15—H15B109.5C28—C31—H31C109.5
H15A—C15—H15B109.5H31A—C31—H31C109.5
C12—C15—H15C109.5H31B—C31—H31C109.5
H15A—C15—H15C109.5C30—C32—H32A109.5
H15B—C15—H15C109.5C30—C32—H32B109.5
C14—C16—H16A109.5H32A—C32—H32B109.5
C14—C16—H16B109.5C30—C32—H32C109.5
H16A—C16—H16B109.5H32A—C32—H32C109.5
C14—C16—H16C109.5H32B—C32—H32C109.5
H16A—C16—H16C109.5C11—N1—C14116.74 (15)
H16B—C16—H16C109.5C11—N2—C12116.63 (15)
C18—C17—C26119.09 (15)C30—N3—C27116.44 (14)
C18—C17—C27117.21 (14)C27—N4—C28116.61 (14)
C10—C1—C2—C3−175.15 (17)C21—C22—C23—C24−0.8 (3)
C11—C1—C2—C37.8 (3)C22—C23—C24—C251.1 (3)
C10—C1—C2—C73.1 (2)C23—C24—C25—C260.3 (3)
C11—C1—C2—C7−173.91 (16)C24—C25—C26—C21−1.9 (3)
C7—C2—C3—C42.5 (3)C24—C25—C26—C17179.75 (17)
C1—C2—C3—C4−179.26 (18)C20—C21—C26—C25−177.21 (15)
C2—C3—C4—C5−0.4 (3)C22—C21—C26—C252.0 (2)
C3—C4—C5—C6−1.5 (3)C20—C21—C26—C171.3 (2)
C4—C5—C6—C71.3 (3)C22—C21—C26—C17−179.48 (15)
C5—C6—C7—C8−179.16 (19)C18—C17—C26—C25175.28 (16)
C5—C6—C7—C20.8 (3)C27—C17—C26—C25−7.9 (3)
C3—C2—C7—C8177.34 (16)C18—C17—C26—C21−3.1 (2)
C1—C2—C7—C8−1.0 (3)C27—C17—C26—C21173.76 (15)
C3—C2—C7—C6−2.6 (3)C18—C17—C27—N4140.10 (17)
C1—C2—C7—C6179.01 (16)C26—C17—C27—N4−36.8 (2)
C6—C7—C8—C9178.50 (19)C18—C17—C27—N3−37.2 (2)
C2—C7—C8—C9−1.5 (3)C26—C17—C27—N3145.92 (16)
C7—C8—C9—C101.9 (3)N4—C28—C29—C30−0.5 (3)
C2—C1—C10—C9−2.8 (3)C31—C28—C29—C30179.84 (19)
C11—C1—C10—C9174.40 (16)C28—C29—C30—N31.0 (3)
C8—C9—C10—C10.3 (3)C28—C29—C30—C32−178.10 (17)
C10—C1—C11—N1−140.99 (17)N2—C11—N1—C14−0.5 (3)
C2—C1—C11—N136.1 (2)C1—C11—N1—C14176.14 (15)
C10—C1—C11—N235.9 (2)C13—C14—N1—C110.2 (2)
C2—C1—C11—N2−146.97 (16)C16—C14—N1—C11−179.46 (16)
N2—C12—C13—C14−0.1 (3)N1—C11—N2—C120.4 (3)
C15—C12—C13—C14179.50 (18)C1—C11—N2—C12−176.27 (15)
C12—C13—C14—N10.0 (3)C13—C12—N2—C11−0.1 (2)
C12—C13—C14—C16179.70 (18)C15—C12—N2—C11−179.72 (17)
C26—C17—C18—C192.7 (3)C29—C30—N3—C27−0.5 (2)
C27—C17—C18—C19−174.41 (17)C32—C30—N3—C27178.65 (16)
C17—C18—C19—C20−0.2 (3)N4—C27—N3—C30−0.6 (3)
C18—C19—C20—C21−1.7 (3)C17—C27—N3—C30176.45 (15)
C19—C20—C21—C22−178.11 (18)N3—C27—N4—C281.0 (3)
C19—C20—C21—C261.1 (3)C17—C27—N4—C28−175.97 (15)
C20—C21—C22—C23178.51 (18)C29—C28—N4—C27−0.4 (3)
C26—C21—C22—C23−0.7 (3)C31—C28—N4—C27179.27 (17)
Cg1, Cg2, Cg5 and Cg6 are the centroids of the N1/N2/C11–C14, C1/C2/C7–C10, N3/N4,C27–C30 and C17–C21/C26 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C22—H22···Cg1i0.932.743.651 (4)167
C13—H13···Cg2ii0.932.763.597 (4)150
C6—H6···Cg50.932.753.665 (2)168
C29—H29···Cg6iii0.932.723.546 (3)149
Table 1

Hydrogen-bond geometry (Å, °)

Cg1, Cg2, Cg5 and Cg6 are the centroids of the N1/N2/C11–C14, C1/C2/C7–C10, N3/N4,C27–C30 and C17–C21/C26 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C22—H22⋯Cg1i0.932.743.651 (4)167
C13—H13⋯Cg2ii0.932.763.597 (4)150
C6—H6⋯Cg50.932.753.665 (2)168
C29—H29⋯Cg6iii0.932.723.546 (3)149

Symmetry codes: (i) ; (ii) ; (iii) .

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