Literature DB >> 22091102

Diethyl 2,6,11-trioxo-2,3-dihydro-1H-anthra[1,2-d]imidazole-1,3-diacetate.

Zahra Afrakssou, Amal Haoudi, Frédéric Capet, Christian Rolando, Lahcen El Ammari.   

Abstract

The title compound, C(23)H(20)N(2)O(7), consists of three fused six-membered rings (A, B and C) and one five-membered ring (D), linked to two ethyl acetate groups. The four fused rings are slightly folded around the O=C⋯C=O direction of the anthraquinone system, with a dihedral angle of 3.07 (8)° between the fused five- and six-membered rings (C and D) and the terminal ring (A). The planes through the atoms forming each acetate group are nearly perpendicular to the mean plane of the anthra[1,2-d]imidazole system, as indicated by the dihedral angles between them of 79.94 (9) and 85.90 (9)°. The crystal packing displays non-classical C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 22091102      PMCID: PMC3213523          DOI: 10.1107/S1600536811028091

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of anthraquinone derivatives, see: Afrakssou et al. (2011 ▶); Guimarães et al. (2009 ▶); Zoń et al. (2003 ▶). For their applications as colourants, see: Mori et al. (1990 ▶); Kowalczyk et al. (2010 ▶); Ossowski et al. (2005 ▶).

Experimental

Crystal data

C23H20N2O7 M = 436.41 Monoclinic, a = 17.462 (1) Å b = 13.0646 (9) Å c = 9.1411 (6) Å β = 103.915 (3)° V = 2024.2 (2) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.49 × 0.11 × 0.09 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.602, T max = 0.746 32055 measured reflections 5006 independent reflections 3339 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.153 S = 1.01 5006 reflections 291 parameters H-atom parameters constrained Δρmax = 0.57 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT-Plus (Bruker, 2009 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811028091/bt5578sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811028091/bt5578Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811028091/bt5578Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H20N2O7F(000) = 912
Mr = 436.41Dx = 1.432 Mg m3
Monoclinic, P21/cMelting point: 443 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 17.462 (1) ÅCell parameters from 5953 reflections
b = 13.0646 (9) Åθ = 2.8–28.2°
c = 9.1411 (6) ŵ = 0.11 mm1
β = 103.915 (3)°T = 100 K
V = 2024.2 (2) Å3Needle, orange
Z = 40.49 × 0.11 × 0.09 mm
Bruker APEXII CCD diffractometer5006 independent reflections
Radiation source: fine-focus sealed tube3339 reflections with I > 2σ(I)
graphiteRint = 0.057
φ and ω scansθmax = 28.3°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −23→17
Tmin = 0.602, Tmax = 0.746k = −17→17
32055 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.153H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0807P)2 + 0.7872P] where P = (Fo2 + 2Fc2)/3
5006 reflections(Δ/σ)max < 0.001
291 parametersΔρmax = 0.57 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
C10.03454 (11)0.81216 (15)0.1634 (2)0.0212 (4)
C2−0.01666 (12)0.88216 (16)0.0739 (2)0.0251 (4)
H2−0.01200.95310.09700.030*
C3−0.07428 (12)0.84794 (18)−0.0487 (2)0.0291 (5)
H3−0.10890.8956−0.10990.035*
C4−0.08148 (12)0.74399 (17)−0.0823 (2)0.0300 (5)
H4−0.12040.7211−0.16740.036*
C5−0.03235 (11)0.67372 (16)0.0073 (2)0.0251 (4)
H5−0.03780.6027−0.01530.030*
C60.02552 (11)0.70791 (15)0.1315 (2)0.0213 (4)
C70.07787 (11)0.63253 (15)0.2280 (2)0.0211 (4)
C80.13726 (11)0.67067 (15)0.3619 (2)0.0195 (4)
C90.14819 (11)0.77711 (14)0.3921 (2)0.0180 (4)
C100.09975 (11)0.85232 (15)0.2866 (2)0.0207 (4)
C110.18249 (11)0.59666 (14)0.4533 (2)0.0208 (4)
H110.17290.52630.42960.025*
C120.24099 (11)0.62368 (15)0.5779 (2)0.0213 (4)
H120.27220.57330.63990.026*
C130.25240 (11)0.72640 (15)0.6087 (2)0.0196 (4)
C140.20748 (11)0.80493 (14)0.5205 (2)0.0184 (4)
C150.29890 (11)0.87703 (15)0.7166 (2)0.0219 (4)
C160.36449 (12)0.71882 (15)0.8400 (2)0.0229 (4)
H16A0.33820.66350.88360.028*
H16B0.38800.76700.92210.028*
C170.42943 (11)0.67314 (16)0.7757 (2)0.0229 (4)
C180.51981 (13)0.53472 (18)0.8019 (3)0.0358 (5)
H18A0.55720.49930.88510.043*
H18B0.55060.57890.74910.043*
C190.47416 (16)0.4572 (2)0.6938 (4)0.0512 (7)
H19A0.44390.41350.74650.077*
H19B0.51090.41490.65390.077*
H19C0.43800.49260.61050.077*
C200.21415 (12)1.00388 (15)0.5665 (2)0.0238 (4)
H20A0.22251.03900.66510.029*
H20B0.15731.00810.51630.029*
C210.26099 (12)1.05796 (16)0.4711 (2)0.0250 (4)
C220.29699 (17)1.22304 (19)0.4012 (3)0.0454 (6)
H22A0.27591.21320.29150.054*
H22B0.35361.20460.42720.054*
C230.2867 (2)1.3309 (2)0.4429 (3)0.0564 (8)
H23A0.23041.34760.41990.085*
H23B0.31351.37610.38550.085*
H23C0.30961.34030.55100.085*
N10.30651 (9)0.77227 (12)0.72586 (17)0.0199 (3)
N20.23663 (9)0.89680 (12)0.59127 (18)0.0203 (3)
O10.07231 (9)0.54083 (10)0.19817 (16)0.0272 (3)
O20.11351 (9)0.94387 (11)0.29568 (17)0.0309 (4)
O30.33699 (8)0.94101 (11)0.80032 (15)0.0260 (3)
O40.44572 (9)0.70173 (12)0.66182 (16)0.0325 (4)
O50.46530 (9)0.59785 (12)0.86323 (17)0.0336 (4)
O60.29952 (9)1.01755 (12)0.39486 (17)0.0320 (4)
O70.25385 (10)1.15896 (12)0.48532 (19)0.0374 (4)
U11U22U33U12U13U23
C10.0234 (9)0.0248 (10)0.0172 (9)−0.0005 (8)0.0085 (7)−0.0014 (7)
C20.0291 (10)0.0255 (10)0.0215 (10)0.0010 (8)0.0077 (8)0.0019 (8)
C30.0274 (10)0.0357 (12)0.0234 (10)0.0036 (9)0.0044 (8)0.0035 (9)
C40.0267 (10)0.0387 (13)0.0230 (10)−0.0040 (9)0.0030 (8)−0.0016 (9)
C50.0251 (10)0.0264 (11)0.0252 (10)−0.0045 (8)0.0087 (8)−0.0055 (8)
C60.0210 (9)0.0261 (10)0.0194 (9)−0.0022 (8)0.0097 (7)−0.0007 (7)
C70.0241 (9)0.0228 (10)0.0193 (9)−0.0035 (8)0.0111 (8)−0.0016 (7)
C80.0228 (9)0.0199 (10)0.0184 (9)−0.0014 (7)0.0099 (7)−0.0012 (7)
C90.0203 (9)0.0190 (9)0.0167 (9)0.0016 (7)0.0084 (7)0.0005 (7)
C100.0239 (9)0.0214 (10)0.0181 (9)0.0005 (8)0.0080 (7)0.0001 (7)
C110.0278 (10)0.0149 (9)0.0216 (9)−0.0014 (8)0.0097 (8)−0.0012 (7)
C120.0260 (10)0.0210 (10)0.0187 (9)0.0026 (8)0.0088 (8)0.0033 (7)
C130.0207 (9)0.0228 (10)0.0170 (9)0.0007 (7)0.0078 (7)0.0008 (7)
C140.0212 (9)0.0168 (9)0.0198 (9)−0.0007 (7)0.0099 (7)−0.0004 (7)
C150.0229 (9)0.0243 (10)0.0207 (9)0.0008 (8)0.0096 (8)0.0001 (8)
C160.0269 (10)0.0257 (10)0.0161 (9)0.0015 (8)0.0050 (8)0.0018 (8)
C170.0216 (9)0.0281 (11)0.0178 (9)0.0002 (8)0.0023 (7)0.0024 (8)
C180.0273 (11)0.0401 (14)0.0414 (13)0.0138 (10)0.0107 (10)0.0111 (10)
C190.0367 (14)0.0409 (16)0.078 (2)0.0058 (11)0.0164 (14)−0.0043 (14)
C200.0282 (10)0.0188 (10)0.0249 (10)0.0003 (8)0.0077 (8)−0.0028 (8)
C210.0260 (10)0.0241 (10)0.0249 (10)−0.0004 (8)0.0063 (8)−0.0003 (8)
C220.0604 (16)0.0309 (13)0.0533 (16)−0.0024 (12)0.0305 (13)0.0111 (11)
C230.082 (2)0.0395 (16)0.0500 (17)−0.0095 (15)0.0199 (15)0.0078 (13)
N10.0225 (8)0.0196 (8)0.0174 (8)0.0010 (6)0.0047 (6)−0.0013 (6)
N20.0234 (8)0.0179 (8)0.0202 (8)−0.0005 (6)0.0062 (6)−0.0014 (6)
O10.0325 (8)0.0224 (8)0.0270 (7)−0.0027 (6)0.0078 (6)−0.0044 (6)
O20.0374 (8)0.0211 (8)0.0301 (8)−0.0007 (6)0.0000 (6)0.0032 (6)
O30.0281 (7)0.0247 (8)0.0253 (7)−0.0037 (6)0.0067 (6)−0.0054 (6)
O40.0330 (8)0.0458 (10)0.0213 (7)0.0098 (7)0.0116 (6)0.0105 (6)
O50.0315 (8)0.0438 (10)0.0276 (8)0.0139 (7)0.0114 (6)0.0144 (7)
O60.0389 (9)0.0311 (8)0.0304 (8)−0.0011 (7)0.0167 (7)−0.0025 (6)
O70.0519 (10)0.0224 (8)0.0454 (10)−0.0007 (7)0.0261 (8)0.0036 (7)
C1—C61.394 (3)C15—N21.401 (2)
C1—C21.397 (3)C16—N11.447 (2)
C1—C101.492 (3)C16—C171.519 (3)
C2—C31.388 (3)C16—H16A0.9900
C2—H20.9500C16—H16B0.9900
C3—C41.391 (3)C17—O41.203 (2)
C3—H30.9500C17—O51.326 (2)
C4—C51.383 (3)C18—O51.469 (3)
C4—H40.9500C18—C191.503 (4)
C5—C61.399 (3)C18—H18A0.9900
C5—H50.9500C18—H18B0.9900
C6—C71.482 (3)C19—H19A0.9800
C7—O11.227 (2)C19—H19B0.9800
C7—C81.487 (3)C19—H19C0.9800
C8—C111.393 (3)C20—N21.456 (2)
C8—C91.422 (3)C20—C211.508 (3)
C9—C141.413 (3)C20—H20A0.9900
C9—C101.489 (3)C20—H20B0.9900
C10—O21.219 (2)C21—O61.201 (2)
C11—C121.380 (3)C21—O71.335 (3)
C11—H110.9500C22—O71.462 (3)
C12—C131.376 (3)C22—C231.482 (4)
C12—H120.9500C22—H22A0.9900
C13—N11.383 (2)C22—H22B0.9900
C13—C141.419 (3)C23—H23A0.9800
C14—N21.400 (2)C23—H23B0.9800
C15—O31.217 (2)C23—H23C0.9800
C15—N11.376 (2)
C6—C1—C2119.54 (18)N1—C16—H16B109.3
C6—C1—C10121.94 (17)C17—C16—H16B109.3
C2—C1—C10118.47 (18)H16A—C16—H16B108.0
C3—C2—C1119.95 (19)O4—C17—O5125.21 (19)
C3—C2—H2120.0O4—C17—C16124.53 (18)
C1—C2—H2120.0O5—C17—C16110.26 (16)
C2—C3—C4120.1 (2)O5—C18—C19109.85 (19)
C2—C3—H3119.9O5—C18—H18A109.7
C4—C3—H3119.9C19—C18—H18A109.7
C5—C4—C3120.47 (19)O5—C18—H18B109.7
C5—C4—H4119.8C19—C18—H18B109.7
C3—C4—H4119.8H18A—C18—H18B108.2
C4—C5—C6119.52 (19)C18—C19—H19A109.5
C4—C5—H5120.2C18—C19—H19B109.5
C6—C5—H5120.2H19A—C19—H19B109.5
C1—C6—C5120.32 (18)C18—C19—H19C109.5
C1—C6—C7120.17 (17)H19A—C19—H19C109.5
C5—C6—C7119.51 (18)H19B—C19—H19C109.5
O1—C7—C6120.79 (17)N2—C20—C21112.12 (16)
O1—C7—C8120.81 (18)N2—C20—H20A109.2
C6—C7—C8118.40 (17)C21—C20—H20A109.2
C11—C8—C9122.16 (17)N2—C20—H20B109.2
C11—C8—C7116.35 (17)C21—C20—H20B109.2
C9—C8—C7121.47 (17)H20A—C20—H20B107.9
C14—C9—C8116.75 (16)O6—C21—O7124.74 (19)
C14—C9—C10123.82 (17)O6—C21—C20125.98 (19)
C8—C9—C10119.39 (16)O7—C21—C20109.28 (16)
O2—C10—C9122.11 (17)O7—C22—C23107.4 (2)
O2—C10—C1119.91 (17)O7—C22—H22A110.2
C9—C10—C1117.94 (16)C23—C22—H22A110.2
C12—C11—C8121.18 (18)O7—C22—H22B110.2
C12—C11—H11119.4C23—C22—H22B110.2
C8—C11—H11119.4H22A—C22—H22B108.5
C13—C12—C11117.42 (17)C22—C23—H23A109.5
C13—C12—H12121.3C22—C23—H23B109.5
C11—C12—H12121.3H23A—C23—H23B109.5
C12—C13—N1128.30 (17)C22—C23—H23C109.5
C12—C13—C14123.76 (17)H23A—C23—H23C109.5
N1—C13—C14107.94 (16)H23B—C23—H23C109.5
N2—C14—C9135.76 (17)C15—N1—C13110.22 (15)
N2—C14—C13105.53 (16)C15—N1—C16124.39 (16)
C9—C14—C13118.71 (17)C13—N1—C16125.37 (16)
O3—C15—N1127.91 (18)C14—N2—C15110.13 (15)
O3—C15—N2125.93 (18)C14—N2—C20134.24 (16)
N1—C15—N2106.15 (16)C15—N2—C20115.56 (16)
N1—C16—C17111.62 (15)C17—O5—C18116.20 (16)
N1—C16—H16A109.3C21—O7—C22116.27 (17)
C17—C16—H16A109.3
C6—C1—C2—C3−2.2 (3)C10—C9—C14—N23.2 (3)
C10—C1—C2—C3175.18 (18)C8—C9—C14—C130.8 (2)
C1—C2—C3—C40.4 (3)C10—C9—C14—C13−177.01 (17)
C2—C3—C4—C51.1 (3)C12—C13—C14—N2178.95 (17)
C3—C4—C5—C6−0.7 (3)N1—C13—C14—N2−0.7 (2)
C2—C1—C6—C52.5 (3)C12—C13—C14—C9−0.9 (3)
C10—C1—C6—C5−174.73 (17)N1—C13—C14—C9179.43 (16)
C2—C1—C6—C7−178.23 (17)N1—C16—C17—O421.5 (3)
C10—C1—C6—C74.5 (3)N1—C16—C17—O5−158.68 (16)
C4—C5—C6—C1−1.1 (3)N2—C20—C21—O615.8 (3)
C4—C5—C6—C7179.67 (18)N2—C20—C21—O7−163.51 (17)
C1—C6—C7—O1−177.49 (17)O3—C15—N1—C13−179.68 (19)
C5—C6—C7—O11.8 (3)N2—C15—N1—C131.4 (2)
C1—C6—C7—C82.6 (3)O3—C15—N1—C16−1.2 (3)
C5—C6—C7—C8−178.19 (17)N2—C15—N1—C16179.85 (16)
O1—C7—C8—C11−3.0 (3)C12—C13—N1—C15179.94 (18)
C6—C7—C8—C11176.95 (16)C14—C13—N1—C15−0.4 (2)
O1—C7—C8—C9175.54 (17)C12—C13—N1—C161.5 (3)
C6—C7—C8—C9−4.5 (3)C14—C13—N1—C16−178.88 (16)
C11—C8—C9—C14−0.1 (3)C17—C16—N1—C15−107.4 (2)
C7—C8—C9—C14−178.58 (16)C17—C16—N1—C1370.9 (2)
C11—C8—C9—C10177.81 (17)C9—C14—N2—C15−178.6 (2)
C7—C8—C9—C10−0.6 (3)C13—C14—N2—C151.6 (2)
C14—C9—C10—O27.6 (3)C9—C14—N2—C204.7 (4)
C8—C9—C10—O2−170.20 (18)C13—C14—N2—C20−175.14 (19)
C14—C9—C10—C1−174.76 (16)O3—C15—N2—C14179.19 (18)
C8—C9—C10—C17.5 (3)N1—C15—N2—C14−1.8 (2)
C6—C1—C10—O2168.12 (18)O3—C15—N2—C20−3.4 (3)
C2—C1—C10—O2−9.2 (3)N1—C15—N2—C20175.55 (15)
C6—C1—C10—C9−9.6 (3)C21—C20—N2—C14−95.1 (2)
C2—C1—C10—C9173.13 (17)C21—C20—N2—C1588.3 (2)
C9—C8—C11—C12−0.6 (3)O4—C17—O5—C18−10.5 (3)
C7—C8—C11—C12177.95 (17)C16—C17—O5—C18169.61 (17)
C8—C11—C12—C130.5 (3)C19—C18—O5—C17−80.1 (2)
C11—C12—C13—N1179.80 (18)O6—C21—O7—C22−0.2 (3)
C11—C12—C13—C140.2 (3)C20—C21—O7—C22179.08 (19)
C8—C9—C14—N2−178.98 (19)C23—C22—O7—C21−175.2 (2)
D—H···AD—HH···AD···AD—H···A
C5—H5···O1i0.952.493.353 (2)151.
C12—H12···O6ii0.952.563.380 (2)145.
C16—H16A···O6ii0.992.473.369 (3)151.
C16—H16B···O4ii0.992.223.120 (2)151.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O1i0.952.493.353 (2)151
C12—H12⋯O6ii0.952.563.380 (2)145
C16—H16A⋯O6ii0.992.473.369 (3)151
C16—H16B⋯O4ii0.992.223.120 (2)151

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(4-Methyl-phen-yl)-1H-anthraceno[1,2-d]imidazole-6,11-dione: a fluorescent chemosensor.

Authors:  Tiago T Guimarães; Eufrânio N Da Silva Júnior; Carlos Eduardo M Carvalho; Carlos A De Simone; Antonio V Pinto
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-18

3.  Carcinogenicity of naturally occurring 1-hydroxyanthraquinone in rats: induction of large bowel, liver and stomach neoplasms.

Authors:  H Mori; N Yoshimi; H Iwata; Y Mori; A Hara; T Tanaka; K Kawai
Journal:  Carcinogenesis       Date:  1990-05       Impact factor: 4.944

4.  Di-tert-butyl 2,6,11-trioxo-2,3-dihydro-1H-anthra[1,2-d]imidazole-1,3-diacetate.

Authors:  Zahra Afrakssou; Yousef Kandri Rodi; Natalie Saffon; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-18
  4 in total

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