| Literature DB >> 22091067 |
Abstract
Comparable to many amino acids, the title compound, C(6)H(5)NO(3), is a substitution product of picolinic acid. The mol-ecule shows approximate non-crystallographic C(s) symmetry. Like many amino acids, the mol-ecule is present in its zwitterionic state. Intra- as well as inter-molecular hydrogen bonds are observed, the latter connecting the mol-ecules into zigzag chains along the crystallographic b axis. An inter-molecular C-C distance of only 3.368 (2) Å exclusively involving carbon atoms of aromatic rings (centroid-centroid separation = 3.803 Å) is indicative of π-π inter-actions connecting the mol-ecules into stacks along the crystallographic a axis.Entities:
Year: 2011 PMID: 22091067 PMCID: PMC3213488 DOI: 10.1107/S1600536811027462
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H5NO3 | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 2465 reflections |
| θ = 3.0–28.3° | |
| µ = 0.13 mm−1 | |
| β = 95.102 (1)° | Block, colourless |
| 0.56 × 0.50 × 0.22 mm | |
| Bruker APEXII CCD diffractometer | 758 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 28.3°, θmin = 1.8° |
| φ and ω scans | |
| 2659 measured reflections | |
| 768 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 768 reflections | (Δ/σ)max < 0.001 |
| 96 parameters | Δρmax = 0.26 e Å−3 |
| 1 restraint | Δρmin = −0.15 e Å−3 |
| Refinement. Due to the absence of a strong anomalous scatterer, the Flack parameter is meaningless. Thus, Friedel opposites (588 pairs) have been merged and the item was removed from the CIF. |
| O1 | −0.0877 (3) | 0.8750 (2) | 0.28327 (12) | 0.0355 (3) | |
| O2 | −0.0543 (4) | 0.7074 (2) | 0.45701 (11) | 0.0357 (3) | |
| O3 | 0.1674 (4) | 0.7340 (2) | 0.10355 (11) | 0.0350 (3) | |
| H3 | 0.0796 | 0.8189 | 0.1465 | 0.053* | |
| N1 | 0.2583 (3) | 0.4001 (2) | 0.35230 (10) | 0.0207 (3) | |
| H71 | 0.188 (7) | 0.386 (5) | 0.437 (2) | 0.051 (7)* | |
| C1 | −0.0040 (4) | 0.7302 (2) | 0.35008 (14) | 0.0242 (3) | |
| C2 | 0.1756 (4) | 0.5650 (2) | 0.28933 (12) | 0.0191 (3) | |
| C3 | 0.2518 (4) | 0.5751 (2) | 0.16925 (12) | 0.0226 (3) | |
| C4 | 0.4148 (4) | 0.4133 (3) | 0.11965 (12) | 0.0270 (4) | |
| H4 | 0.4699 | 0.4169 | 0.0385 | 0.032* | |
| C5 | 0.4942 (4) | 0.2504 (3) | 0.18837 (14) | 0.0274 (3) | |
| H5 | 0.6056 | 0.1411 | 0.1549 | 0.033* | |
| C6 | 0.4120 (4) | 0.2445 (3) | 0.30745 (14) | 0.0254 (3) | |
| H6 | 0.4648 | 0.1315 | 0.3556 | 0.030* |
| O1 | 0.0439 (7) | 0.0223 (6) | 0.0408 (7) | 0.0096 (6) | 0.0061 (5) | 0.0009 (5) |
| O2 | 0.0495 (7) | 0.0310 (7) | 0.0287 (5) | 0.0057 (6) | 0.0149 (5) | −0.0076 (5) |
| O3 | 0.0464 (7) | 0.0322 (7) | 0.0274 (6) | 0.0076 (6) | 0.0081 (5) | 0.0125 (6) |
| N1 | 0.0247 (6) | 0.0195 (6) | 0.0182 (5) | −0.0026 (5) | 0.0037 (4) | 0.0009 (5) |
| C1 | 0.0254 (7) | 0.0189 (7) | 0.0288 (7) | 0.0011 (6) | 0.0046 (5) | −0.0054 (6) |
| C2 | 0.0206 (6) | 0.0175 (6) | 0.0196 (6) | −0.0010 (5) | 0.0034 (4) | −0.0007 (6) |
| C3 | 0.0240 (6) | 0.0236 (8) | 0.0202 (6) | −0.0008 (6) | 0.0021 (5) | 0.0034 (6) |
| C4 | 0.0272 (7) | 0.0352 (9) | 0.0194 (6) | 0.0013 (7) | 0.0061 (5) | −0.0038 (7) |
| C5 | 0.0278 (7) | 0.0261 (8) | 0.0285 (7) | 0.0035 (7) | 0.0045 (5) | −0.0087 (7) |
| C6 | 0.0282 (7) | 0.0196 (7) | 0.0281 (7) | 0.0007 (6) | 0.0012 (5) | 0.0014 (6) |
| O1—C1 | 1.261 (2) | C2—C3 | 1.4002 (17) |
| O2—C1 | 1.237 (2) | C3—C4 | 1.403 (2) |
| O3—C3 | 1.332 (2) | C4—C5 | 1.369 (3) |
| O3—H3 | 0.8400 | C4—H4 | 0.9500 |
| N1—C6 | 1.330 (2) | C5—C6 | 1.395 (2) |
| N1—C2 | 1.348 (2) | C5—H5 | 0.9500 |
| N1—H71 | 1.01 (2) | C6—H6 | 0.9500 |
| C1—C2 | 1.510 (2) | ||
| ?···? | ? | ||
| C3—O3—H3 | 109.5 | O3—C3—C4 | 120.95 (13) |
| C6—N1—C2 | 123.88 (12) | C2—C3—C4 | 118.48 (14) |
| C6—N1—H71 | 115.9 (19) | C5—C4—C3 | 119.92 (12) |
| C2—N1—H71 | 120.1 (19) | C5—C4—H4 | 120.0 |
| O2—C1—O1 | 128.19 (15) | C3—C4—H4 | 120.0 |
| O2—C1—C2 | 117.13 (15) | C4—C5—C6 | 120.15 (15) |
| O1—C1—C2 | 114.68 (13) | C4—C5—H5 | 119.9 |
| N1—C2—C3 | 118.89 (12) | C6—C5—H5 | 119.9 |
| N1—C2—C1 | 118.73 (12) | N1—C6—C5 | 118.68 (15) |
| C3—C2—C1 | 122.36 (13) | N1—C6—H6 | 120.7 |
| O3—C3—C2 | 120.57 (13) | C5—C6—H6 | 120.7 |
| C6—N1—C2—C3 | 0.5 (2) | N1—C2—C3—C4 | −0.6 (2) |
| C6—N1—C2—C1 | 179.01 (13) | C1—C2—C3—C4 | −179.10 (14) |
| O2—C1—C2—N1 | 2.6 (2) | O3—C3—C4—C5 | −179.02 (14) |
| O1—C1—C2—N1 | −176.69 (13) | C2—C3—C4—C5 | 0.2 (2) |
| O2—C1—C2—C3 | −178.94 (14) | C3—C4—C5—C6 | 0.3 (2) |
| O1—C1—C2—C3 | 1.8 (2) | C2—N1—C6—C5 | 0.1 (2) |
| N1—C2—C3—O3 | 178.64 (14) | C4—C5—C6—N1 | −0.5 (2) |
| C1—C2—C3—O3 | 0.2 (2) |
| H··· | ||||
| O3—H3···O1 | 0.84 | 1.75 | 2.4997 (17) | 148. |
| N1—H71···O2i | 1.01 (2) | 1.80 (3) | 2.6767 (17) | 143 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3⋯O1 | 0.84 | 1.75 | 2.4997 (17) | 148 |
| N1—H71⋯O2i | 1.01 (2) | 1.80 (3) | 2.6767 (17) | 143 (3) |
Symmetry code: (i) .