Literature DB >> 22091067

3-Hy-droxy-pyridinium-2-carboxylate.

Richard Betz1, Thomas Gerber.   

Abstract

Comparable to many amino acids, the title compound, C(6)H(5)NO(3), is a substitution product of picolinic acid. The mol-ecule shows approximate non-crystallographic C(s) symmetry. Like many amino acids, the mol-ecule is present in its zwitterionic state. Intra- as well as inter-molecular hydrogen bonds are observed, the latter connecting the mol-ecules into zigzag chains along the crystallographic b axis. An inter-molecular C-C distance of only 3.368 (2) Å exclusively involving carbon atoms of aromatic rings (centroid-centroid separation = 3.803 Å) is indicative of π-π inter-actions connecting the mol-ecules into stacks along the crystallographic a axis.

Entities:  

Year:  2011        PMID: 22091067      PMCID: PMC3213488          DOI: 10.1107/S1600536811027462

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of chelate ligands as opposed to monodentate ligands, see: Gade (1998 ▶). For the crystal structures of two mercury coordination compounds applying the title compound as a mono-, as well as a bidentate, ligand, see: Popović et al. (2007 ▶). For graph-set analysis of hydrogen bonds, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C6H5NO3 M = 139.11 Monoclinic, a = 3.8034 (1) Å b = 6.8144 (2) Å c = 11.1807 (4) Å β = 95.102 (1)° V = 288.63 (2) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 200 K 0.56 × 0.50 × 0.22 mm

Data collection

Bruker APEXII CCD diffractometer 2659 measured reflections 768 independent reflections 758 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.083 S = 1.07 768 reflections 96 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811027462/ez2254sup1.cif Supplementary material file. DOI: 10.1107/S1600536811027462/ez2254Isup2.cdx Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811027462/ez2254Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536811027462/ez2254Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H5NO3F(000) = 144
Mr = 139.11Dx = 1.601 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 2465 reflections
a = 3.8034 (1) Åθ = 3.0–28.3°
b = 6.8144 (2) ŵ = 0.13 mm1
c = 11.1807 (4) ÅT = 200 K
β = 95.102 (1)°Block, colourless
V = 288.63 (2) Å30.56 × 0.50 × 0.22 mm
Z = 2
Bruker APEXII CCD diffractometer758 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.029
graphiteθmax = 28.3°, θmin = 1.8°
φ and ω scansh = −5→3
2659 measured reflectionsk = −9→9
768 independent reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.083H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0544P)2 + 0.0435P] where P = (Fo2 + 2Fc2)/3
768 reflections(Δ/σ)max < 0.001
96 parametersΔρmax = 0.26 e Å3
1 restraintΔρmin = −0.15 e Å3
Refinement. Due to the absence of a strong anomalous scatterer, the Flack parameter is meaningless. Thus, Friedel opposites (588 pairs) have been merged and the item was removed from the CIF.
xyzUiso*/Ueq
O1−0.0877 (3)0.8750 (2)0.28327 (12)0.0355 (3)
O2−0.0543 (4)0.7074 (2)0.45701 (11)0.0357 (3)
O30.1674 (4)0.7340 (2)0.10355 (11)0.0350 (3)
H30.07960.81890.14650.053*
N10.2583 (3)0.4001 (2)0.35230 (10)0.0207 (3)
H710.188 (7)0.386 (5)0.437 (2)0.051 (7)*
C1−0.0040 (4)0.7302 (2)0.35008 (14)0.0242 (3)
C20.1756 (4)0.5650 (2)0.28933 (12)0.0191 (3)
C30.2518 (4)0.5751 (2)0.16925 (12)0.0226 (3)
C40.4148 (4)0.4133 (3)0.11965 (12)0.0270 (4)
H40.46990.41690.03850.032*
C50.4942 (4)0.2504 (3)0.18837 (14)0.0274 (3)
H50.60560.14110.15490.033*
C60.4120 (4)0.2445 (3)0.30745 (14)0.0254 (3)
H60.46480.13150.35560.030*
U11U22U33U12U13U23
O10.0439 (7)0.0223 (6)0.0408 (7)0.0096 (6)0.0061 (5)0.0009 (5)
O20.0495 (7)0.0310 (7)0.0287 (5)0.0057 (6)0.0149 (5)−0.0076 (5)
O30.0464 (7)0.0322 (7)0.0274 (6)0.0076 (6)0.0081 (5)0.0125 (6)
N10.0247 (6)0.0195 (6)0.0182 (5)−0.0026 (5)0.0037 (4)0.0009 (5)
C10.0254 (7)0.0189 (7)0.0288 (7)0.0011 (6)0.0046 (5)−0.0054 (6)
C20.0206 (6)0.0175 (6)0.0196 (6)−0.0010 (5)0.0034 (4)−0.0007 (6)
C30.0240 (6)0.0236 (8)0.0202 (6)−0.0008 (6)0.0021 (5)0.0034 (6)
C40.0272 (7)0.0352 (9)0.0194 (6)0.0013 (7)0.0061 (5)−0.0038 (7)
C50.0278 (7)0.0261 (8)0.0285 (7)0.0035 (7)0.0045 (5)−0.0087 (7)
C60.0282 (7)0.0196 (7)0.0281 (7)0.0007 (6)0.0012 (5)0.0014 (6)
O1—C11.261 (2)C2—C31.4002 (17)
O2—C11.237 (2)C3—C41.403 (2)
O3—C31.332 (2)C4—C51.369 (3)
O3—H30.8400C4—H40.9500
N1—C61.330 (2)C5—C61.395 (2)
N1—C21.348 (2)C5—H50.9500
N1—H711.01 (2)C6—H60.9500
C1—C21.510 (2)
?···??
C3—O3—H3109.5O3—C3—C4120.95 (13)
C6—N1—C2123.88 (12)C2—C3—C4118.48 (14)
C6—N1—H71115.9 (19)C5—C4—C3119.92 (12)
C2—N1—H71120.1 (19)C5—C4—H4120.0
O2—C1—O1128.19 (15)C3—C4—H4120.0
O2—C1—C2117.13 (15)C4—C5—C6120.15 (15)
O1—C1—C2114.68 (13)C4—C5—H5119.9
N1—C2—C3118.89 (12)C6—C5—H5119.9
N1—C2—C1118.73 (12)N1—C6—C5118.68 (15)
C3—C2—C1122.36 (13)N1—C6—H6120.7
O3—C3—C2120.57 (13)C5—C6—H6120.7
C6—N1—C2—C30.5 (2)N1—C2—C3—C4−0.6 (2)
C6—N1—C2—C1179.01 (13)C1—C2—C3—C4−179.10 (14)
O2—C1—C2—N12.6 (2)O3—C3—C4—C5−179.02 (14)
O1—C1—C2—N1−176.69 (13)C2—C3—C4—C50.2 (2)
O2—C1—C2—C3−178.94 (14)C3—C4—C5—C60.3 (2)
O1—C1—C2—C31.8 (2)C2—N1—C6—C50.1 (2)
N1—C2—C3—O3178.64 (14)C4—C5—C6—N1−0.5 (2)
C1—C2—C3—O30.2 (2)
D—H···AD—HH···AD···AD—H···A
O3—H3···O10.841.752.4997 (17)148.
N1—H71···O2i1.01 (2)1.80 (3)2.6767 (17)143 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O10.841.752.4997 (17)148
N1—H71⋯O2i1.01 (2)1.80 (3)2.6767 (17)143 (3)

Symmetry code: (i) .

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