Literature DB >> 22090998

4,7,13,18-Tetra-oxa-1,10-diazo-nia-bicyclo-[8.5.5]icosane hexa-fluorido-silicate.

Nalinava Sen Gupta, David S Wragg, Mats Tilset, Jon Petter Omtvedt.   

Abstract

The asymmetric unit of the title molecular salt, C(14)H(30)N(2)O(4) (2+)·SiF(6) (2-), contains half of both the anion and the cation, both ions being completed by a crystallographic twofold axis passing through the Si atom. The cation has a cage structure with the ammonium H atoms pointing into the cage. These H atoms are shielded from inter-molecular inter-actions and form only intra-molecular contacts. There are short inter-molecular C-H⋯F inter-actions in the structure, but no conventional inter-molecular hydrogen bonds.

Entities:  

Year:  2011        PMID: 22090998      PMCID: PMC3212341          DOI: 10.1107/S1600536811026006

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Cos et al. (1982 ▶); Rehder & Wang (2003 ▶); Luger et al. (1991 ▶); Sen Gupta et al. (2011 ▶); Anderson et al. (2006 ▶); Braband et al. (2003 ▶); Llusar et al. (2001 ▶). For discussion of a cryptand as a mol­ecular automatic titrator, see: Alibrandi et al. (2009 ▶). For NMR data, see: Macchioni et al. (2001 ▶); Christe & Wilson (1990 ▶).

Experimental

Crystal data

C14H30N2O4 2+·SiF6 2− M = 432.49 Orthorhombic, a = 10.050 (5) Å b = 23.218 (5) Å c = 8.031 (5) Å V = 1874.0 (15) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 293 K 0.11 × 0.10 × 0.05 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.977, T max = 0.990 9809 measured reflections 2305 independent reflections 1467 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.116 S = 1.02 2305 reflections 123 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Berndt, 1999 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811026006/fy2006sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811026006/fy2006Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H30N2O42+·SiF62F(000) = 912
Mr = 432.49Dx = 1.533 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 2312 reflections
a = 10.050 (5) Åθ = 2.2–28.0°
b = 23.218 (5) ŵ = 0.21 mm1
c = 8.031 (5) ÅT = 293 K
V = 1874.0 (15) Å3Block, colourless
Z = 40.11 × 0.10 × 0.05 mm
Bruker SMART CCD area-detector diffractometer2305 independent reflections
Radiation source: sealed tube1467 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 28.8°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −11→13
Tmin = 0.977, Tmax = 0.990k = −29→31
9809 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0509P)2 + 0.6523P] where P = (Fo2 + 2Fc2)/3
2305 reflections(Δ/σ)max < 0.001
123 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Si10.50000.14596 (3)0.25000.02931 (19)
F30.61848 (13)0.19715 (5)0.25800 (17)0.0524 (3)
O20.86157 (15)0.02390 (6)0.76498 (17)0.0421 (4)
F0040.50972 (13)0.14736 (7)0.04208 (16)0.0729 (5)
F0050.61920 (12)0.09635 (5)0.2602 (2)0.0668 (4)
O10.97909 (13)0.14163 (5)0.97904 (18)0.0391 (3)
N10.79018 (16)0.13502 (6)0.72125 (19)0.0341 (4)
H10.87020.11740.73670.041*
C50.9322 (2)−0.02623 (8)0.7128 (3)0.0403 (5)
H5A0.9389−0.02670.59230.048*
H5B0.8844−0.06050.74770.048*
C10.6852 (2)0.08871 (8)0.7376 (3)0.0450 (5)
H1A0.65810.08530.85310.054*
H1B0.60760.09910.67220.054*
C30.7786 (2)0.18006 (8)0.8537 (3)0.0394 (5)
H3A0.68540.18790.87570.047*
H3B0.82000.21550.81600.047*
C0110.9254 (2)0.18663 (9)0.5104 (2)0.0412 (5)
H01A0.92530.20320.39960.049*
H01B0.94590.21680.59010.049*
C40.8453 (2)0.15967 (10)1.0105 (3)0.0429 (5)
H4A0.84560.19061.09170.051*
H4B0.79520.12781.05690.051*
C20.7402 (2)0.03213 (9)0.6775 (3)0.0483 (6)
H2A0.67850.00110.70130.058*
H2B0.75600.03330.55840.058*
C0140.7927 (2)0.16036 (9)0.5484 (2)0.0424 (5)
H01C0.77360.13040.46770.051*
H01D0.72410.18960.53910.051*
U11U22U33U12U13U23
Si10.0274 (4)0.0258 (3)0.0347 (4)0.0000.0017 (3)0.000
F30.0491 (8)0.0408 (6)0.0671 (8)−0.0155 (6)−0.0126 (6)0.0053 (6)
O20.0468 (8)0.0332 (7)0.0463 (8)0.0034 (6)−0.0072 (7)−0.0068 (6)
F0040.0457 (8)0.1356 (14)0.0373 (7)−0.0124 (8)0.0033 (6)−0.0186 (8)
F0050.0401 (7)0.0406 (7)0.1199 (13)0.0122 (6)−0.0051 (8)−0.0097 (8)
O10.0357 (8)0.0381 (8)0.0435 (8)−0.0003 (6)0.0016 (6)0.0001 (6)
N10.0268 (8)0.0330 (8)0.0426 (9)0.0010 (6)0.0007 (7)0.0030 (7)
C50.0537 (13)0.0267 (9)0.0406 (11)−0.0044 (9)0.0065 (9)−0.0041 (7)
C10.0293 (10)0.0426 (12)0.0632 (14)−0.0069 (9)−0.0008 (10)0.0046 (11)
C30.0383 (11)0.0346 (10)0.0454 (11)0.0042 (9)0.0074 (9)0.0007 (8)
C0110.0448 (12)0.0429 (11)0.0358 (10)0.0049 (9)0.0023 (9)0.0081 (9)
C40.0388 (11)0.0510 (13)0.0390 (11)0.0033 (9)0.0084 (9)0.0014 (9)
C20.0457 (13)0.0414 (12)0.0578 (13)−0.0097 (10)−0.0078 (11)−0.0001 (10)
C0140.0380 (11)0.0505 (12)0.0386 (11)0.0045 (9)−0.0064 (9)0.0067 (9)
Si1—F005i1.6640 (13)C1—C21.505 (3)
Si1—F0051.6640 (13)C1—H1A0.9700
Si1—F004i1.6730 (17)C1—H1B0.9700
Si1—F0041.6730 (17)C3—C41.503 (3)
Si1—F31.6836 (13)C3—H3A0.9700
Si1—F3i1.6836 (13)C3—H3B0.9700
O2—C21.421 (3)C011—O1ii1.421 (2)
O2—C51.426 (2)C011—C0141.498 (3)
O1—C011ii1.421 (2)C011—H01A0.9700
O1—C41.431 (2)C011—H01B0.9700
N1—C31.496 (2)C4—H4A0.9700
N1—C0141.508 (2)C4—H4B0.9700
N1—C11.512 (2)C2—H2A0.9700
N1—H10.9100C2—H2B0.9700
C5—C5ii1.488 (4)C014—H01C0.9700
C5—H5A0.9700C014—H01D0.9700
C5—H5B0.9700
F005i—Si1—F00592.38 (10)N1—C1—H1B109.7
F005i—Si1—F004i91.18 (8)H1A—C1—H1B108.2
F005—Si1—F004i90.36 (8)N1—C3—C4109.91 (16)
F005i—Si1—F00490.36 (8)N1—C3—H3A109.7
F005—Si1—F00491.18 (8)C4—C3—H3A109.7
F004i—Si1—F004177.77 (13)N1—C3—H3B109.7
F005i—Si1—F3178.75 (7)C4—C3—H3B109.7
F005—Si1—F388.72 (7)H3A—C3—H3B108.2
F004i—Si1—F389.40 (7)O1ii—C011—C014106.85 (16)
F004—Si1—F389.03 (7)O1ii—C011—H01A110.4
F005i—Si1—F3i88.72 (7)C014—C011—H01A110.4
F005—Si1—F3i178.75 (7)O1ii—C011—H01B110.4
F004i—Si1—F3i89.03 (7)C014—C011—H01B110.4
F004—Si1—F3i89.40 (7)H01A—C011—H01B108.6
F3—Si1—F3i90.18 (10)O1—C4—C3111.31 (16)
C2—O2—C5113.08 (16)O1—C4—H4A109.4
C011ii—O1—C4114.14 (15)C3—C4—H4A109.4
C3—N1—C014112.51 (15)O1—C4—H4B109.4
C3—N1—C1112.39 (16)C3—C4—H4B109.4
C014—N1—C1111.66 (16)H4A—C4—H4B108.0
C3—N1—H1106.6O2—C2—C1105.91 (17)
C014—N1—H1106.6O2—C2—H2A110.6
C1—N1—H1106.6C1—C2—H2A110.6
O2—C5—C5ii109.75 (13)O2—C2—H2B110.6
O2—C5—H5A109.7C1—C2—H2B110.6
C5ii—C5—H5A109.7H2A—C2—H2B108.7
O2—C5—H5B109.7C011—C014—N1111.18 (16)
C5ii—C5—H5B109.7C011—C014—H01C109.4
H5A—C5—H5B108.2N1—C014—H01C109.4
C2—C1—N1109.68 (17)C011—C014—H01D109.4
C2—C1—H1A109.7N1—C014—H01D109.4
N1—C1—H1A109.7H01C—C014—H01D108.0
C2—C1—H1B109.7
C2—O2—C5—C5ii169.93 (19)N1—C3—C4—O153.0 (2)
C3—N1—C1—C2−148.05 (17)C5—O2—C2—C1−175.52 (16)
C014—N1—C1—C284.4 (2)N1—C1—C2—O252.4 (2)
C014—N1—C3—C4−150.55 (16)O1ii—C011—C014—N160.8 (2)
C1—N1—C3—C482.4 (2)C3—N1—C014—C01176.0 (2)
C011ii—O1—C4—C388.0 (2)C1—N1—C014—C011−156.55 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1···O20.912.192.701 (2)115
N1—H1···O10.912.302.813 (2)115
N1—H1···O1ii0.912.372.826 (2)111
C1—H1B···F004i0.972.373.277 (3)156
C011—H01B···F3iii0.972.503.381 (3)151
C2—H2A···F005iv0.972.393.289 (3)155
C014—H01C···F0050.972.413.257 (3)146
C3—H3A···F004v0.972.413.189 (3)137
C3—H3B···F3iii0.972.173.129 (3)169
C014—H01D···F30.972.503.039 (3)115
C4—H4B···F005v0.972.523.368 (3)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O20.912.192.701 (2)115
N1—H1⋯O10.912.302.813 (2)115
N1—H1⋯O1i0.912.372.826 (2)111
C1—H1B⋯F004ii0.972.373.277 (3)156
C011—H01B⋯F3iii0.972.503.381 (3)151
C2—H2A⋯F005iv0.972.393.289 (3)155
C014—H01C⋯F0050.972.413.257 (3)146
C3—H3A⋯F004v0.972.413.189 (3)137
C3—H3B⋯F3iii0.972.173.129 (3)169
C014—H01D⋯F30.972.503.039 (3)115
C4—H4B⋯F005v0.972.523.368 (3)147

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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