Literature DB >> 22090988

2,2'-Bipyridine-cyclo-pentane-1,2,3,4-tetra-carb-oxy-lic acid (1/1).

Jian-Li Lin1, Xia-Xia Guo, Wen-Xiang Huang.   

Abstract

The asymmetric unit of the title compound, C(10)H(8)N(2)·C(9)H(10)O(8), contains a half-molecule of 2,2'-bipyridine and a half-molecule of 1,2,3,4-cyclopentanetetracarboxylic acid, both components being completed by crystallographic inversion symmetry. In the crystal, the mol-ecules are assembled into chains extending along [010] by O-H⋯N hydrogen bonds; adjacent chains are linked by O-H⋯O hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2011        PMID: 22090988      PMCID: PMC3212331          DOI: 10.1107/S1600536811025827

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to coordination polymers, see: Bowers et al. (2005 ▶); Bowes et al. (2003 ▶). For related structures, see: Chen et al. (2005 ▶).

Experimental

Crystal data

C10H8N2·C9H10O8 M = 402.35 Orthorhombic, a = 12.942 (3) Å b = 25.118 (5) Å c = 5.4353 (11) Å V = 1766.8 (6) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.44 × 0.36 × 0.27 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.949, T max = 0.968 15967 measured reflections 2054 independent reflections 1499 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.089 S = 1.02 2054 reflections 141 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.16 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811025827/jh2304sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811025827/jh2304Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811025827/jh2304Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8N2·C9H10O8F(000) = 840
Mr = 402.35Dx = 1.513 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 8201 reflections
a = 12.942 (3) Åθ = 3.2–27.5°
b = 25.118 (5) ŵ = 0.12 mm1
c = 5.4353 (11) ÅT = 293 K
V = 1766.8 (6) Å3Block, white
Z = 40.44 × 0.36 × 0.27 mm
Rigaku R-AXIS RAPID diffractometer2054 independent reflections
Radiation source: fine-focus sealed tube1499 reflections with I > 2σ(I)
graphiteRint = 0.055
Detector resolution: 0 pixels mm-1θmax = 27.4°, θmin = 3.2°
ω scansh = −16→16
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −32→32
Tmin = 0.949, Tmax = 0.968l = −7→7
15967 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.034P)2 + 0.4998P] where P = (Fo2 + 2Fc2)/3
2054 reflections(Δ/σ)max = 0.001
141 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.51833 (9)0.28149 (5)0.1032 (3)0.0282 (3)
H1A0.53370.29440.26940.034*
C20.40596 (10)0.29744 (5)0.0333 (3)0.0311 (3)
H2A0.36720.30040.18750.037*
C30.36186 (15)0.2500−0.1051 (4)0.0354 (5)
H3A0.38420.2500−0.27540.043*
H3B0.28690.2500−0.09970.043*
O10.58022 (9)0.31419 (5)−0.2864 (2)0.0560 (4)
O20.68873 (8)0.30931 (4)0.0286 (2)0.0429 (3)
C40.59708 (10)0.30368 (5)−0.0745 (3)0.0313 (3)
O30.33802 (8)0.35651 (4)−0.2754 (3)0.0535 (4)
O40.44673 (9)0.38926 (4)0.0007 (2)0.0438 (3)
C50.39410 (10)0.34981 (6)−0.0985 (3)0.0341 (3)
N10.07695 (9)0.51473 (5)0.2707 (2)0.0392 (3)
C60.14948 (12)0.49161 (7)0.4103 (3)0.0456 (4)
H6A0.17370.51030.54630.055*
C70.19052 (12)0.44202 (7)0.3654 (3)0.0453 (4)
H7A0.24060.42760.46830.054*
C80.15516 (13)0.41452 (7)0.1634 (3)0.0448 (4)
H8A0.18160.38110.12580.054*
C90.08006 (13)0.43719 (6)0.0176 (3)0.0430 (4)
H9A0.05530.4190−0.11930.052*
C100.04132 (11)0.48714 (6)0.0747 (3)0.0357 (3)
H2B0.7334 (16)0.3216 (8)−0.077 (4)0.074 (7)*
H4A0.4380 (18)0.4198 (10)−0.098 (5)0.095 (8)*
U11U22U33U12U13U23
C10.0233 (6)0.0356 (7)0.0258 (7)−0.0014 (5)0.0007 (6)−0.0040 (6)
C20.0225 (6)0.0321 (7)0.0389 (8)−0.0010 (5)0.0033 (6)−0.0016 (6)
C30.0260 (9)0.0286 (10)0.0517 (14)0.000−0.0046 (10)0.000
O10.0469 (7)0.0863 (10)0.0350 (7)−0.0119 (6)0.0054 (5)0.0090 (6)
O20.0249 (5)0.0494 (7)0.0544 (8)−0.0087 (5)0.0019 (5)0.0014 (6)
C40.0279 (7)0.0290 (7)0.0371 (9)−0.0010 (6)0.0046 (6)−0.0054 (6)
O30.0430 (6)0.0380 (6)0.0796 (9)−0.0087 (5)−0.0285 (6)0.0102 (6)
O40.0467 (6)0.0340 (6)0.0508 (7)−0.0104 (5)−0.0073 (5)−0.0026 (5)
C50.0236 (6)0.0311 (7)0.0475 (9)−0.0015 (6)0.0004 (7)−0.0026 (7)
N10.0387 (7)0.0378 (7)0.0411 (8)−0.0084 (6)−0.0029 (6)0.0029 (6)
C60.0430 (8)0.0494 (9)0.0443 (10)−0.0126 (8)−0.0101 (8)0.0036 (8)
C70.0390 (8)0.0458 (9)0.0510 (11)−0.0051 (7)−0.0069 (8)0.0125 (8)
C80.0467 (9)0.0394 (9)0.0483 (10)−0.0018 (7)0.0023 (8)0.0083 (8)
C90.0507 (9)0.0386 (8)0.0396 (9)−0.0046 (7)−0.0054 (8)0.0021 (7)
C100.0375 (7)0.0353 (8)0.0343 (8)−0.0093 (6)0.0013 (7)0.0057 (7)
C1—C41.5105 (19)O4—C51.3177 (17)
C1—C21.5555 (18)O4—H4A0.94 (2)
C1—C1i1.582 (3)N1—C61.339 (2)
C1—H1A0.9800N1—C101.352 (2)
C2—C51.506 (2)C6—C71.376 (2)
C2—C31.5202 (19)C6—H6A0.9300
C2—H2A0.9800C7—C81.375 (2)
C3—C2i1.5202 (19)C7—H7A0.9300
C3—H3A0.9700C8—C91.377 (2)
C3—H3B0.9700C8—H8A0.9300
O1—C41.2015 (19)C9—C101.386 (2)
O2—C41.3194 (17)C9—H9A0.9300
O2—H2B0.87 (2)C10—C10ii1.490 (3)
O3—C51.2166 (19)
C4—C1—C2112.31 (12)O2—C4—C1111.99 (13)
C4—C1—C1i111.65 (7)C5—O4—H4A108.6 (14)
C2—C1—C1i104.92 (7)O3—C5—O4121.84 (14)
C4—C1—H1A109.3O3—C5—C2123.90 (13)
C2—C1—H1A109.3O4—C5—C2114.19 (13)
C1i—C1—H1A109.3C6—N1—C10117.60 (14)
C5—C2—C3114.28 (13)N1—C6—C7124.23 (16)
C5—C2—C1115.88 (11)N1—C6—H6A117.9
C3—C2—C1105.67 (12)C7—C6—H6A117.9
C5—C2—H2A106.8C8—C7—C6117.89 (16)
C3—C2—H2A106.8C8—C7—H7A121.1
C1—C2—H2A106.8C6—C7—H7A121.1
C2—C3—C2i103.21 (17)C7—C8—C9119.11 (16)
C2—C3—H3A111.1C7—C8—H8A120.4
C2i—C3—H3A111.1C9—C8—H8A120.4
C2—C3—H3B111.1C8—C9—C10120.02 (16)
C2i—C3—H3B111.1C8—C9—H9A120.0
H3A—C3—H3B109.1C10—C9—H9A120.0
C4—O2—H2B110.7 (14)N1—C10—C9121.14 (14)
O1—C4—O2123.15 (14)N1—C10—C10ii116.88 (17)
O1—C4—C1124.84 (13)C9—C10—C10ii121.98 (18)
D—H···AD—HH···AD···AD—H···A
O2—H2B···O3iii0.87 (2)1.80 (2)2.6520 (16)165 (2)
O4—H4A···N1iv0.94 (2)1.80 (2)2.7335 (18)169 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2B⋯O3i0.87 (2)1.80 (2)2.6520 (16)165 (2)
O4—H4A⋯N1ii0.94 (2)1.80 (2)2.7335 (18)169 (2)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  Salts of maleic and fumaric acids with organic polyamines: comparison of isomeric acids as building blocks in supramolecular chemistry.

Authors:  Katharine F Bowes; George Ferguson; Alan J Lough; Christopher Glidewell
Journal:  Acta Crystallogr B       Date:  2003-01-28

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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