Literature DB >> 22090974

4,7,13,18-Tetra-oxa-1,10-diazo-nia-bicyclo-[8.5.5]icosane bis-(hexa-fluorido-phosphate).

Nalinava Sen Gupta, David S Wragg, Mats Tilset, Jon Petter Omtvedt.   

Abstract

The asymmetric unit of the title structure, C(14)H(30)N(2)O(4) (2+)·2PF(6) (-), contains the anion and half of the cation, the latter being completed by a crystallographic twofold axis. The cation has a cage structure with the ammonium H atoms pointing into the cage. These H atoms are shielded from inter-molecular inter-actions and form only intra-molecular contacts. There are short inter-molecular C-H⋯F inter-actions in the structure, but no conventional inter-molecular hydrogen bonds.

Entities:  

Year:  2011        PMID: 22090974      PMCID: PMC3212317          DOI: 10.1107/S1600536811025992

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Cos et al. (1982 ▶); Rehder & Wang (2003 ▶); Luger et al. (1991 ▶); Sen Gupta et al. (2011 ▶). For discussion of a cryptand as a mol­ecular automatic titrator, see: Alibrandi et al. (2009 ▶). For NMR data, see: Macchioni et al. (2001 ▶); Christe & Wilson (1990 ▶).

Experimental

Crystal data

C14H30N2O4 2+·2PF6 − M = 580.34 Monoclinic, a = 10.8297 (16) Å b = 16.485 (2) Å c = 12.6846 (19) Å β = 95.538 (2)° V = 2254.0 (6) Å3 Z = 4 Mo Kα radiation μ = 0.32 mm−1 T = 296 K 0.24 × 0.06 × 0.02 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.977, T max = 0.994 9756 measured reflections 2785 independent reflections 2002 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.095 S = 1.03 2785 reflections 154 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.34 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and WinGX (Farrugia, 1999 ▶); molecular graphics: DIAMOND (Brandenburg & Berndt, 1999 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811025992/fy2005sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811025992/fy2005Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H30N2O42+·2PF6F(000) = 1192
Mr = 580.34Dx = 1.710 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1782 reflections
a = 10.8297 (16) Åθ = 2.3–28.9°
b = 16.485 (2) ŵ = 0.32 mm1
c = 12.6846 (19) ÅT = 296 K
β = 95.538 (2)°Needle, colourless
V = 2254.0 (6) Å30.24 × 0.06 × 0.02 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2785 independent reflections
Radiation source: sealed tube2002 reflections with I > 2σ(I)
graphiteRint = 0.039
φ and ω scansθmax = 28.9°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −14→14
Tmin = 0.977, Tmax = 0.994k = −22→21
9756 measured reflectionsl = −17→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0378P)2 + 1.6619P] where P = (Fo2 + 2Fc2)/3
2785 reflections(Δ/σ)max = 0.001
154 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.47273 (5)0.15573 (3)0.99505 (4)0.02088 (14)
O10.56230 (12)0.43242 (8)0.89074 (10)0.0200 (3)
F10.46836 (11)0.12944 (8)1.11636 (9)0.0315 (3)
F20.35902 (11)0.09625 (8)0.96176 (9)0.0316 (3)
O20.39311 (12)0.59898 (8)0.80510 (11)0.0222 (3)
F60.58658 (11)0.21576 (7)1.02955 (10)0.0334 (3)
F50.37765 (11)0.22713 (7)1.01299 (11)0.0366 (3)
F30.56899 (12)0.08506 (8)0.98002 (11)0.0379 (3)
F40.47690 (13)0.18356 (9)0.87520 (10)0.0421 (4)
N10.31687 (14)0.44308 (9)0.79332 (12)0.0180 (3)
H00.38740.46840.77750.022*
C60.46254 (18)0.40126 (12)0.94552 (15)0.0217 (4)
H6A0.43390.44290.99140.026*
H6B0.49170.35560.98930.026*
C50.35700 (18)0.37461 (12)0.86707 (15)0.0203 (4)
H5A0.38310.32890.82650.024*
H5B0.28770.35730.90460.024*
C40.65712 (18)0.37384 (12)0.87734 (16)0.0225 (4)
H4A0.62160.32560.84260.027*
H4B0.69880.35830.94550.027*
C10.24085 (18)0.50610 (12)0.84409 (16)0.0218 (4)
H1A0.15360.49210.83310.026*
H1B0.26480.50790.91970.026*
C30.25267 (18)0.41362 (13)0.69006 (15)0.0227 (4)
H3A0.21310.45910.65180.027*
H3B0.18870.37500.70400.027*
C70.43045 (19)0.66749 (12)0.74776 (17)0.0257 (5)
H7A0.40190.71700.77880.031*
H7B0.39470.66460.67470.031*
C20.26190 (18)0.58770 (12)0.79590 (16)0.0238 (4)
H2A0.22860.58880.72210.029*
H2B0.22220.63000.83360.029*
U11U22U33U12U13U23
P10.0180 (3)0.0221 (3)0.0230 (3)0.0016 (2)0.0041 (2)0.0031 (2)
O10.0164 (7)0.0203 (7)0.0237 (7)0.0008 (5)0.0041 (5)0.0034 (6)
F10.0293 (7)0.0440 (8)0.0210 (6)−0.0057 (6)0.0018 (5)0.0048 (5)
F20.0312 (7)0.0350 (7)0.0281 (7)−0.0101 (6)−0.0007 (5)−0.0018 (5)
O20.0215 (7)0.0205 (7)0.0249 (7)0.0003 (6)0.0034 (6)0.0057 (6)
F60.0221 (6)0.0305 (7)0.0476 (8)−0.0053 (5)0.0031 (6)0.0034 (6)
F50.0252 (7)0.0270 (7)0.0587 (9)0.0080 (5)0.0097 (6)0.0028 (6)
F30.0338 (7)0.0298 (7)0.0523 (9)0.0105 (6)0.0158 (6)−0.0002 (6)
F40.0452 (8)0.0555 (9)0.0260 (7)−0.0063 (7)0.0063 (6)0.0133 (6)
N10.0143 (8)0.0194 (8)0.0208 (9)−0.0003 (6)0.0039 (6)−0.0006 (7)
C60.0219 (10)0.0252 (11)0.0186 (10)−0.0007 (8)0.0047 (8)0.0038 (8)
C50.0198 (10)0.0182 (10)0.0233 (10)0.0004 (8)0.0045 (8)0.0029 (8)
C40.0197 (10)0.0249 (11)0.0228 (11)0.0042 (8)0.0012 (8)0.0048 (8)
C10.0197 (10)0.0212 (10)0.0256 (11)0.0047 (8)0.0077 (8)−0.0024 (8)
C30.0174 (10)0.0281 (11)0.0221 (10)−0.0032 (8)−0.0003 (8)−0.0028 (8)
C70.0339 (12)0.0160 (10)0.0286 (11)0.0049 (8)0.0102 (9)0.0021 (8)
C20.0205 (10)0.0270 (11)0.0240 (11)0.0061 (8)0.0030 (8)0.0014 (8)
P1—F31.5871 (13)C5—H5A0.9700
P1—F41.5927 (13)C5—H5B0.9700
P1—F51.5946 (13)C4—C3i1.509 (3)
P1—F21.5987 (13)C4—H4A0.9700
P1—F11.6037 (13)C4—H4B0.9700
P1—F61.6083 (13)C1—C21.504 (3)
O1—C41.432 (2)C1—H1A0.9700
O1—C61.435 (2)C1—H1B0.9700
O2—C71.423 (2)C3—C4i1.509 (3)
O2—C21.427 (2)C3—H3A0.9700
N1—C31.503 (2)C3—H3B0.9700
N1—C51.503 (2)C7—C7i1.502 (4)
N1—C11.508 (2)C7—H7A0.9700
N1—H00.9100C7—H7B0.9700
C6—C51.507 (3)C2—H2A0.9700
C6—H6A0.9700C2—H2B0.9700
C6—H6B0.9700
F3—P1—F491.00 (8)C6—C5—H5B109.6
F3—P1—F5178.59 (8)H5A—C5—H5B108.1
F4—P1—F590.10 (8)O1—C4—C3i106.57 (15)
F3—P1—F290.93 (7)O1—C4—H4A110.4
F4—P1—F290.95 (7)C3i—C4—H4A110.4
F5—P1—F289.93 (7)O1—C4—H4B110.4
F3—P1—F189.85 (7)C3i—C4—H4B110.4
F4—P1—F1178.93 (8)H4A—C4—H4B108.6
F5—P1—F189.04 (7)C2—C1—N1109.40 (15)
F2—P1—F189.68 (7)C2—C1—H1A109.8
F3—P1—F689.38 (7)N1—C1—H1A109.8
F4—P1—F689.48 (7)C2—C1—H1B109.8
F5—P1—F689.75 (7)N1—C1—H1B109.8
F2—P1—F6179.46 (8)H1A—C1—H1B108.2
F1—P1—F689.88 (7)N1—C3—C4i111.34 (16)
C4—O1—C6113.47 (14)N1—C3—H3A109.4
C7—O2—C2113.05 (15)C4i—C3—H3A109.4
C3—N1—C5112.42 (15)N1—C3—H3B109.4
C3—N1—C1111.66 (15)C4i—C3—H3B109.4
C5—N1—C1112.86 (15)H3A—C3—H3B108.0
C3—N1—H0106.5O2—C7—C7i108.31 (15)
C5—N1—H0106.5O2—C7—H7A110.0
C1—N1—H0106.5C7i—C7—H7A110.0
O1—C6—C5110.07 (15)O2—C7—H7B110.0
O1—C6—H6A109.6C7i—C7—H7B110.0
C5—C6—H6A109.6H7A—C7—H7B108.4
O1—C6—H6B109.6O2—C2—C1105.79 (15)
C5—C6—H6B109.6O2—C2—H2A110.6
H6A—C6—H6B108.2C1—C2—H2A110.6
N1—C5—C6110.33 (16)O2—C2—H2B110.6
N1—C5—H5A109.6C1—C2—H2B110.6
C6—C5—H5A109.6H2A—C2—H2B108.7
N1—C5—H5B109.6
C4—O1—C6—C5−96.35 (18)C5—N1—C1—C2149.57 (16)
C3—N1—C5—C6156.50 (15)C5—N1—C3—C4i−71.3 (2)
C1—N1—C5—C6−76.12 (19)C1—N1—C3—C4i160.72 (16)
O1—C6—C5—N1−55.1 (2)C2—O2—C7—C7i−173.23 (18)
C6—O1—C4—C3i174.66 (15)C7—O2—C2—C1170.30 (16)
C3—N1—C1—C2−82.64 (19)N1—C1—C2—O2−53.0 (2)
D—H···AD—HH···AD···AD—H···A
N1—H0···O10.912.342.826 (2)113
N1—H0···O20.912.182.699 (2)115
N1—H0···O1i0.912.332.790 (2)111
C2—H2A···F2ii0.972.433.405 (2)178
C6—H6B···F50.972.483.157 (2)126
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H0⋯O10.912.342.826 (2)113
N1—H0⋯O20.912.182.699 (2)115
N1—H0⋯O1i0.912.332.790 (2)111
C2—H2A⋯F2ii0.972.433.405 (2)178
C6—H6B⋯F50.972.483.157 (2)126

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  [1.1.1]Cryptand: a molecular automatic titrator.

Authors:  Giuseppe Alibrandi; Carmelo Lo Vecchio; Gabriele Lando
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

  2 in total

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