Literature DB >> 22090963

(5E)-5-(4-Meth-oxy-benzyl-idene)-2-(piperidin-1-yl)-1,3-thia-zol-4(5H)-one.

Hoong-Kun Fun, Chin Sing Yeap, Prajwal L Lobo, D Jagadeesh Prasad, Boja Poojary.   

Abstract

In the title compound, C(16)H(18)N(2)O(2)S, the piperidine ring adopts a chair conformation. The central 4-thia-zolidinone ring makes dihedral angles of 12.01 (7) and 51.42 (9)°, respectively, with the benzene ring and the least-squares plane of the piperidine ring. An intra-molecular C-H⋯S hydrogen bond stabilizes the mol-ecular structure and generates an S(6) ring motif. In the crystal, mol-ecules are linked into a tape along the c axis by inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 22090963      PMCID: PMC3212306          DOI: 10.1107/S1600536811025761

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the title compound, see: Lesyk & Zimenkovsky (2004 ▶); Lesyk et al. (2007 ▶); Havrylyuk et al. (2009 ▶); Ahn et al. (2006 ▶); Park et al. (2008 ▶); Geronikaki et al. (2008 ▶); Zimenkovsky et al. (2005 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H18N2O2S M = 302.38 Monoclinic, a = 8.5811 (3) Å b = 16.5165 (6) Å c = 12.4930 (4) Å β = 121.518 (2)° V = 1509.42 (9) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 297 K 0.61 × 0.26 × 0.23 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.877, T max = 0.950 20021 measured reflections 5432 independent reflections 4148 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.119 S = 1.02 5432 reflections 191 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811025761/is2743sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811025761/is2743Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811025761/is2743Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H18N2O2SF(000) = 640
Mr = 302.38Dx = 1.331 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6389 reflections
a = 8.5811 (3) Åθ = 2.8–32.3°
b = 16.5165 (6) ŵ = 0.22 mm1
c = 12.4930 (4) ÅT = 297 K
β = 121.518 (2)°Block, brown
V = 1509.42 (9) Å30.61 × 0.26 × 0.23 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer5432 independent reflections
Radiation source: fine-focus sealed tube4148 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 32.6°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→12
Tmin = 0.877, Tmax = 0.950k = −25→25
20021 measured reflectionsl = −17→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0606P)2 + 0.2092P] where P = (Fo2 + 2Fc2)/3
5432 reflections(Δ/σ)max = 0.001
191 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.20003 (4)0.555618 (16)0.50684 (2)0.03982 (9)
O10.39228 (18)0.38959 (6)0.75694 (9)0.0638 (3)
O20.27412 (16)0.35919 (6)0.04461 (9)0.0561 (2)
N10.28424 (15)0.51913 (6)0.73753 (9)0.0425 (2)
N20.16266 (16)0.64775 (6)0.66938 (10)0.0455 (2)
C10.32029 (16)0.31624 (6)0.34274 (10)0.0382 (2)
H1A0.34360.27110.39350.046*
C20.30857 (17)0.30703 (7)0.22911 (11)0.0418 (2)
H2A0.32160.25600.20340.050*
C30.27723 (16)0.37401 (7)0.15287 (11)0.0409 (2)
C40.2523 (2)0.44940 (7)0.19023 (12)0.0479 (3)
H4A0.22920.49440.13920.057*
C50.2618 (2)0.45754 (6)0.30353 (12)0.0457 (3)
H5A0.24340.50840.32710.055*
C60.29786 (15)0.39221 (6)0.38362 (10)0.0349 (2)
C70.31827 (16)0.39806 (6)0.50618 (10)0.0374 (2)
H7A0.36010.35090.55360.045*
C80.28758 (16)0.45928 (6)0.56330 (10)0.0366 (2)
C90.32720 (18)0.45128 (7)0.69525 (11)0.0422 (2)
C100.21678 (16)0.57634 (6)0.65225 (10)0.0375 (2)
C110.1834 (2)0.66894 (8)0.79030 (12)0.0500 (3)
H11A0.24540.62550.85010.060*
H11B0.06400.67640.77980.060*
C120.2935 (2)0.74644 (8)0.83907 (13)0.0562 (3)
H12A0.29800.76310.91510.067*
H12B0.41780.73640.86010.067*
C130.2120 (2)0.81400 (9)0.74341 (16)0.0675 (4)
H13A0.29080.86110.77530.081*
H13B0.09380.82890.73010.081*
C140.1894 (2)0.78837 (8)0.61928 (15)0.0576 (3)
H14A0.12710.83070.55740.069*
H14B0.30880.78040.63000.069*
C150.08081 (19)0.71084 (7)0.57317 (12)0.0489 (3)
H15A−0.04370.72080.55170.059*
H15B0.07700.69270.49800.059*
C160.2685 (3)0.42727 (11)−0.02815 (15)0.0677 (4)
H16A0.28860.4093−0.09310.102*
H16B0.36210.46520.02520.102*
H16C0.15110.4530−0.06540.102*
U11U22U33U12U13U23
S10.05518 (18)0.03126 (13)0.03620 (14)0.00014 (10)0.02609 (12)−0.00056 (9)
O10.1086 (9)0.0433 (5)0.0527 (5)0.0192 (5)0.0513 (6)0.0128 (4)
O20.0807 (7)0.0558 (5)0.0460 (5)0.0013 (5)0.0430 (5)−0.0033 (4)
N10.0585 (6)0.0364 (4)0.0369 (4)−0.0010 (4)0.0280 (4)−0.0027 (3)
N20.0620 (6)0.0336 (4)0.0418 (5)0.0007 (4)0.0276 (5)−0.0061 (4)
C10.0459 (6)0.0306 (4)0.0402 (5)0.0027 (4)0.0241 (5)0.0004 (4)
C20.0517 (6)0.0348 (5)0.0436 (5)0.0021 (4)0.0282 (5)−0.0047 (4)
C30.0470 (6)0.0423 (5)0.0392 (5)−0.0020 (4)0.0267 (5)−0.0038 (4)
C40.0711 (8)0.0361 (5)0.0474 (6)0.0014 (5)0.0386 (6)0.0040 (4)
C50.0724 (8)0.0282 (4)0.0497 (6)0.0004 (5)0.0411 (6)−0.0009 (4)
C60.0410 (5)0.0307 (4)0.0364 (5)−0.0024 (4)0.0226 (4)−0.0028 (3)
C70.0474 (6)0.0308 (4)0.0376 (5)−0.0014 (4)0.0248 (4)−0.0004 (4)
C80.0461 (5)0.0312 (4)0.0357 (5)−0.0037 (4)0.0235 (4)−0.0020 (4)
C90.0594 (7)0.0352 (5)0.0380 (5)0.0000 (4)0.0297 (5)0.0006 (4)
C100.0447 (5)0.0320 (4)0.0364 (5)−0.0058 (4)0.0217 (4)−0.0065 (4)
C110.0590 (7)0.0486 (6)0.0479 (6)−0.0020 (5)0.0319 (6)−0.0128 (5)
C120.0565 (7)0.0517 (7)0.0551 (7)−0.0024 (6)0.0254 (6)−0.0216 (6)
C130.0740 (10)0.0401 (6)0.0770 (10)0.0010 (6)0.0316 (8)−0.0188 (6)
C140.0613 (8)0.0362 (5)0.0704 (9)−0.0002 (5)0.0311 (7)−0.0004 (6)
C150.0561 (7)0.0361 (5)0.0490 (6)0.0042 (5)0.0236 (6)−0.0020 (5)
C160.0943 (12)0.0728 (10)0.0530 (8)−0.0026 (9)0.0503 (8)0.0041 (7)
S1—C81.7435 (11)C7—C81.3407 (15)
S1—C101.7790 (11)C7—H7A0.9300
O1—C91.2225 (14)C8—C91.5047 (15)
O2—C31.3609 (14)C11—C121.5166 (19)
O2—C161.4309 (19)C11—H11A0.9700
N1—C101.3108 (14)C11—H11B0.9700
N1—C91.3691 (15)C12—C131.513 (2)
N2—C101.3252 (14)C12—H12A0.9700
N2—C151.4634 (16)C12—H12B0.9700
N2—C111.4680 (16)C13—C141.519 (2)
C1—C21.3781 (16)C13—H13A0.9700
C1—C61.4053 (14)C13—H13B0.9700
C1—H1A0.9300C14—C151.5096 (18)
C2—C31.3912 (16)C14—H14A0.9700
C2—H2A0.9300C14—H14B0.9700
C3—C41.3852 (16)C15—H15A0.9700
C4—C51.3811 (17)C15—H15B0.9700
C4—H4A0.9300C16—H16A0.9600
C5—C61.3919 (15)C16—H16B0.9600
C5—H5A0.9300C16—H16C0.9600
C6—C71.4506 (15)
C8—S1—C1088.56 (5)N2—C11—C12109.25 (12)
C3—O2—C16117.82 (11)N2—C11—H11A109.8
C10—N1—C9111.72 (9)C12—C11—H11A109.8
C10—N2—C15124.01 (10)N2—C11—H11B109.8
C10—N2—C11120.94 (10)C12—C11—H11B109.8
C15—N2—C11115.05 (10)H11A—C11—H11B108.3
C2—C1—C6121.52 (10)C13—C12—C11111.81 (12)
C2—C1—H1A119.2C13—C12—H12A109.3
C6—C1—H1A119.2C11—C12—H12A109.3
C1—C2—C3120.09 (10)C13—C12—H12B109.3
C1—C2—H2A120.0C11—C12—H12B109.3
C3—C2—H2A120.0H12A—C12—H12B107.9
O2—C3—C4124.79 (11)C12—C13—C14111.12 (11)
O2—C3—C2115.70 (10)C12—C13—H13A109.4
C4—C3—C2119.52 (10)C14—C13—H13A109.4
C5—C4—C3119.75 (11)C12—C13—H13B109.4
C5—C4—H4A120.1C14—C13—H13B109.4
C3—C4—H4A120.1H13A—C13—H13B108.0
C4—C5—C6122.21 (10)C15—C14—C13110.46 (13)
C4—C5—H5A118.9C15—C14—H14A109.6
C6—C5—H5A118.9C13—C14—H14A109.6
C5—C6—C1116.88 (10)C15—C14—H14B109.6
C5—C6—C7124.46 (9)C13—C14—H14B109.6
C1—C6—C7118.64 (9)H14A—C14—H14B108.1
C8—C7—C6131.54 (10)N2—C15—C14110.80 (11)
C8—C7—H7A114.2N2—C15—H15A109.5
C6—C7—H7A114.2C14—C15—H15A109.5
C7—C8—C9121.47 (10)N2—C15—H15B109.5
C7—C8—S1129.49 (9)C14—C15—H15B109.5
C9—C8—S1109.03 (7)H15A—C15—H15B108.1
O1—C9—N1124.43 (11)O2—C16—H16A109.5
O1—C9—C8122.07 (10)O2—C16—H16B109.5
N1—C9—C8113.49 (9)H16A—C16—H16B109.5
N1—C10—N2123.60 (10)O2—C16—H16C109.5
N1—C10—S1117.18 (8)H16A—C16—H16C109.5
N2—C10—S1119.22 (9)H16B—C16—H16C109.5
C6—C1—C2—C31.20 (18)C7—C8—C9—O11.5 (2)
C16—O2—C3—C48.6 (2)S1—C8—C9—O1−178.96 (12)
C16—O2—C3—C2−171.27 (13)C7—C8—C9—N1−178.78 (11)
C1—C2—C3—O2177.84 (11)S1—C8—C9—N10.74 (13)
C1—C2—C3—C4−2.01 (19)C9—N1—C10—N2179.29 (12)
O2—C3—C4—C5−178.76 (13)C9—N1—C10—S1−1.17 (14)
C2—C3—C4—C51.1 (2)C15—N2—C10—N1−177.59 (12)
C3—C4—C5—C60.7 (2)C11—N2—C10—N12.90 (19)
C4—C5—C6—C1−1.5 (2)C15—N2—C10—S12.88 (17)
C4—C5—C6—C7176.81 (12)C11—N2—C10—S1−176.63 (9)
C2—C1—C6—C50.53 (17)C8—S1—C10—N11.37 (10)
C2—C1—C6—C7−177.87 (11)C8—S1—C10—N2−179.07 (10)
C5—C6—C7—C89.2 (2)C10—N2—C11—C12123.69 (13)
C1—C6—C7—C8−172.51 (12)C15—N2—C11—C12−55.87 (15)
C6—C7—C8—C9−177.40 (11)N2—C11—C12—C1353.89 (16)
C6—C7—C8—S13.2 (2)C11—C12—C13—C14−54.80 (18)
C10—S1—C8—C7178.38 (12)C12—C13—C14—C1554.15 (17)
C10—S1—C8—C9−1.08 (9)C10—N2—C15—C14−122.75 (14)
C10—N1—C9—O1179.94 (14)C11—N2—C15—C1456.79 (16)
C10—N1—C9—C80.25 (15)C13—C14—C15—N2−54.03 (16)
D—H···AD—HH···AD···AD—H···A
C2—H2A···O1i0.932.483.3048 (16)147
C5—H5A···S10.932.583.2809 (15)132
C16—H16A···O1ii0.962.483.421 (3)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯O1i0.932.483.3048 (16)147
C5—H5A⋯S10.932.583.2809 (15)132
C16—H16A⋯O1ii0.962.483.421 (3)167

Symmetry codes: (i) ; (ii) .

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