Literature DB >> 22090944

2-Amino-anilinium 6-carb-oxy-picolinate monohydrate.

Yu-Tang Wang, De-Jiang Gao.   

Abstract

In the title compound, C(6)H(9)N(2) (+)·C(7)H(4)NO(4) (-)·H(2)O, one amino group of diamino-benzene is protonated while one carb-oxy group of pyridine-2,6-dicarb-oxy-lic acid is deprotonated. In the anion, the CO(2) and CO(2)H groups make dihedral angles of 4.0 (5) and 8.7 (4)° with the pyridine ring. In the crystal, extensive N-H⋯O, N-H⋯N and O-H⋯O hydrogen bonds occur between anions, cations and water mol-ecules.

Entities:  

Year:  2011        PMID: 22090944      PMCID: PMC3212287          DOI: 10.1107/S1600536811025050

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds, see: Andre et al. (2011 ▶); Blagden et al. (2008 ▶); Smith et al. (2000 ▶); Kapildev et al. (2011 ▶).

Experimental

Crystal data

C6H9N2 +·C7H4NO4 −·H2O M = 293.28 Monoclinic, a = 12.408 (3) Å b = 13.932 (3) Å c = 8.0951 (16) Å β = 102.41 (3)° V = 1366.6 (5) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.30 × 0.25 × 0.15 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.910, T max = 1.000 7343 measured reflections 1555 independent reflections 1393 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.117 S = 1.12 1555 reflections 191 parameters 2 restraints H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811025050/xu5250sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811025050/xu5250Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811025050/xu5250Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C7H4NO4·H2OF(000) = 616
Mr = 293.28Dx = 1.425 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 1555 reflections
a = 12.408 (3) Åθ = 2.2–27.4°
b = 13.932 (3) ŵ = 0.11 mm1
c = 8.0951 (16) ÅT = 298 K
β = 102.41 (3)°Block, colorless
V = 1366.6 (5) Å30.30 × 0.25 × 0.15 mm
Z = 4
Rigaku Mercury2 diffractometer1555 independent reflections
Radiation source: fine-focus sealed tube1393 reflections with I > 2σ(I)
graphiteRint = 0.041
Detector resolution: 13.6612 pixels mm-1θmax = 27.4°, θmin = 2.2°
CCD profile fitting scansh = −16→15
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −18→18
Tmin = 0.910, Tmax = 1.000l = −10→10
7343 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H-atom parameters constrained
S = 1.12w = 1/[σ2(Fo2) + (0.0734P)2] where P = (Fo2 + 2Fc2)/3
1555 reflections(Δ/σ)max < 0.001
191 parametersΔρmax = 0.19 e Å3
2 restraintsΔρmin = −0.22 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1W0.9144 (2)0.11509 (17)0.8457 (3)0.0468 (6)
H1WA0.90520.07370.91330.070*
H1WB0.89720.09050.75160.070*
O10.75215 (19)0.17288 (15)0.4341 (3)0.0456 (6)
O20.80493 (18)0.02830 (16)0.5392 (3)0.0412 (5)
N30.56474 (19)0.10218 (18)0.2422 (3)0.0286 (5)
O30.30560 (19)0.10298 (17)−0.0480 (3)0.0436 (6)
O40.41055 (17)0.22264 (15)0.0827 (3)0.0397 (5)
H40.35990.25690.03370.060*
N10.61623 (19)0.31257 (19)0.2363 (3)0.0296 (5)
H1A0.55820.34340.25870.044*
H1B0.67720.33180.30800.044*
H1C0.60760.24970.24760.044*
C80.6256 (2)0.33386 (19)0.0621 (3)0.0290 (6)
N20.7964 (2)0.2434 (2)0.1010 (4)0.0452 (7)
H2A0.83420.20690.04130.054*
H2B0.79330.21780.20200.054*
C10.7403 (2)0.0831 (2)0.4445 (4)0.0304 (6)
C60.4728 (2)0.0640 (2)0.1448 (4)0.0293 (6)
C70.3880 (2)0.1321 (2)0.0494 (3)0.0296 (6)
C30.6225 (3)−0.0586 (2)0.3262 (4)0.0371 (7)
H3A0.6748−0.09900.39090.044*
C90.7137 (2)0.2968 (2)0.0015 (4)0.0336 (6)
C50.4515 (3)−0.0335 (2)0.1314 (4)0.0392 (7)
H5A0.3870−0.05660.06230.047*
C130.5445 (3)0.3890 (2)−0.0392 (4)0.0378 (7)
H13A0.48640.41310.00410.045*
C40.5287 (3)−0.0961 (2)0.2238 (5)0.0427 (8)
H4A0.5173−0.16210.21670.051*
C100.7174 (3)0.3179 (3)−0.1655 (5)0.0471 (8)
H10A0.77560.2946−0.20970.057*
C20.6380 (2)0.0403 (2)0.3314 (4)0.0289 (6)
C120.5500 (3)0.4080 (3)−0.2044 (5)0.0503 (9)
H12A0.49530.4444−0.27310.060*
C110.6366 (4)0.3728 (3)−0.2669 (5)0.0549 (10)
H11A0.64090.3859−0.37790.066*
U11U22U33U12U13U23
O1W0.0461 (14)0.0470 (14)0.0444 (13)−0.0005 (11)0.0035 (10)0.0032 (10)
O10.0368 (12)0.0319 (12)0.0563 (14)−0.0070 (10)−0.0164 (10)0.0073 (11)
O20.0311 (11)0.0399 (12)0.0452 (12)0.0016 (9)−0.0085 (9)0.0071 (10)
N30.0222 (10)0.0302 (13)0.0312 (11)−0.0011 (9)0.0014 (9)0.0013 (10)
O30.0307 (12)0.0408 (13)0.0504 (14)0.0011 (9)−0.0108 (10)−0.0029 (10)
O40.0296 (11)0.0318 (10)0.0500 (13)0.0023 (8)−0.0086 (9)0.0000 (10)
N10.0244 (11)0.0326 (12)0.0292 (12)0.0008 (9)−0.0003 (9)−0.0013 (10)
C80.0278 (14)0.0293 (13)0.0286 (14)−0.0010 (11)0.0035 (10)−0.0011 (11)
N20.0343 (14)0.0463 (16)0.0553 (18)0.0115 (12)0.0103 (13)−0.0012 (14)
C10.0246 (13)0.0325 (14)0.0321 (14)−0.0003 (11)0.0015 (10)0.0035 (12)
C60.0217 (12)0.0314 (14)0.0331 (14)−0.0010 (11)0.0020 (10)−0.0005 (12)
C70.0228 (13)0.0366 (14)0.0272 (13)−0.0010 (11)0.0008 (10)−0.0015 (12)
C30.0298 (16)0.0312 (15)0.0480 (18)0.0007 (12)0.0033 (13)0.0080 (13)
C90.0298 (14)0.0314 (15)0.0395 (16)−0.0014 (12)0.0072 (12)−0.0035 (12)
C50.0291 (16)0.0372 (15)0.0461 (18)−0.0059 (13)−0.0032 (13)−0.0018 (14)
C130.0357 (15)0.0397 (16)0.0369 (17)0.0079 (13)0.0054 (12)0.0033 (13)
C40.0363 (16)0.0275 (15)0.060 (2)−0.0048 (13)0.0016 (15)0.0003 (14)
C100.049 (2)0.053 (2)0.045 (2)0.0026 (16)0.0206 (16)−0.0055 (16)
C20.0228 (13)0.0303 (14)0.0320 (13)−0.0012 (11)0.0026 (11)0.0021 (12)
C120.057 (2)0.053 (2)0.0387 (18)0.0148 (18)0.0064 (15)0.0112 (16)
C110.072 (3)0.061 (2)0.0357 (19)0.008 (2)0.0202 (17)0.0082 (17)
O1W—H1WA0.8201C1—C21.518 (4)
O1W—H1WB0.8201C6—C51.384 (4)
O1—C11.264 (4)C6—C71.502 (4)
O2—C11.245 (4)C3—C41.378 (5)
N3—C21.345 (4)C3—C21.391 (4)
N3—C61.349 (4)C3—H3A0.9300
O3—C71.219 (3)C9—C101.394 (5)
O4—C71.307 (4)C5—C41.390 (5)
O4—H40.8201C5—H5A0.9300
N1—C81.470 (4)C13—C121.379 (5)
N1—H1A0.8900C13—H13A0.9300
N1—H1B0.8900C4—H4A0.9300
N1—H1C0.8900C10—C111.382 (6)
C8—C131.386 (4)C10—H10A0.9300
C8—C91.390 (4)C12—C111.373 (6)
N2—C91.378 (4)C12—H12A0.9300
N2—H2A0.9002C11—H11A0.9300
N2—H2B0.8998
H1WA—O1W—H1WB106.3C2—C3—H3A120.4
C2—N3—C6116.7 (2)N2—C9—C8122.5 (3)
C7—O4—H4110.7N2—C9—C10120.3 (3)
C8—N1—H1A109.5C8—C9—C10117.1 (3)
C8—N1—H1B109.5C6—C5—C4118.4 (3)
H1A—N1—H1B109.5C6—C5—H5A120.8
C8—N1—H1C109.5C4—C5—H5A120.8
H1A—N1—H1C109.5C12—C13—C8119.9 (3)
H1B—N1—H1C109.5C12—C13—H13A120.0
C13—C8—C9121.6 (3)C8—C13—H13A120.0
C13—C8—N1118.8 (3)C3—C4—C5118.8 (3)
C9—C8—N1119.6 (2)C3—C4—H4A120.6
C9—N2—H2A113.6C5—C4—H4A120.6
C9—N2—H2B125.0C11—C10—C9121.4 (3)
H2A—N2—H2B113.1C11—C10—H10A119.3
O2—C1—O1125.4 (3)C9—C10—H10A119.3
O2—C1—C2118.4 (3)N3—C2—C3123.1 (3)
O1—C1—C2116.3 (2)N3—C2—C1116.9 (2)
N3—C6—C5123.8 (3)C3—C2—C1120.0 (3)
N3—C6—C7117.6 (2)C11—C12—C13119.6 (3)
C5—C6—C7118.6 (3)C11—C12—H12A120.2
O3—C7—O4124.6 (3)C13—C12—H12A120.2
O3—C7—C6121.3 (3)C12—C11—C10120.3 (3)
O4—C7—C6114.1 (2)C12—C11—H11A119.8
C4—C3—C2119.1 (3)C10—C11—H11A119.8
C4—C3—H3A120.4
C2—N3—C6—C5−0.6 (4)C6—C5—C4—C30.7 (5)
C2—N3—C6—C7177.7 (3)N2—C9—C10—C11−178.8 (4)
N3—C6—C7—O3176.1 (3)C8—C9—C10—C11−0.5 (5)
C5—C6—C7—O3−5.4 (4)C6—N3—C2—C30.1 (4)
N3—C6—C7—O4−4.8 (4)C6—N3—C2—C1−178.6 (3)
C5—C6—C7—O4173.7 (3)C4—C3—C2—N30.8 (5)
C13—C8—C9—N2178.7 (3)C4—C3—C2—C1179.4 (3)
N1—C8—C9—N2−2.8 (4)O2—C1—C2—N3174.0 (3)
C13—C8—C9—C100.4 (4)O1—C1—C2—N3−5.8 (4)
N1—C8—C9—C10178.9 (3)O2—C1—C2—C3−4.7 (4)
N3—C6—C5—C40.2 (5)O1—C1—C2—C3175.5 (3)
C7—C6—C5—C4−178.1 (3)C8—C13—C12—C11−0.6 (6)
C9—C8—C13—C120.2 (5)C13—C12—C11—C100.6 (6)
N1—C8—C13—C12−178.4 (3)C9—C10—C11—C120.0 (7)
C2—C3—C4—C5−1.2 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1Wi0.892.133.004 (4)166
N1—H1B···O3ii0.891.982.862 (3)170
N1—H1C···N30.892.123.003 (4)171
N2—H2A···O1Wiii0.902.413.303 (4)172
N2—H2B···O10.902.143.029 (4)168
O1W—H1WA···O2iv0.822.273.034 (3)155
O1W—H1WB···O20.822.042.831 (3)161
O4—H4···O1i0.821.712.532 (3)179
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1Wi0.892.133.004 (4)166
N1—H1B⋯O3ii0.891.982.862 (3)170
N1—H1C⋯N30.892.123.003 (4)171
N2—H2A⋯O1Wiii0.902.413.303 (4)172
N2—H2B⋯O10.902.143.029 (4)168
O1W—H1WA⋯O2iv0.822.273.034 (3)155
O1W—H1WB⋯O20.822.042.831 (3)161
O4—H4⋯O1i0.821.712.532 (3)179

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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