Literature DB >> 22090927

2-[({[Bis(pyridin-2-yl)methylidene]hydrazinecarbonyl}hydrazinylidene)(pyridin-2-yl)methyl]pyridinium tetra-fluoro-borate.

Jie Zhang1.   

Abstract

In the title compound, C(23)H(19)N(8)O(+)·BF(4) (-), one pyridine N atom is protonated. Two intra-molecular N-H⋯N hydrogen bonds occur. In the crystal, inter-molecular N-H⋯N hydrogen bond links neighboring C(23)H(19)N(8)O(+) units into cyclic supra-molecular dimers while C-H⋯O hydrogen bonds link the C(23)H(19)N(8)O(+) units into a two-dimensional supra-molecular network structure.

Entities:  

Year:  2011        PMID: 22090927      PMCID: PMC3212270          DOI: 10.1107/S1600536811025359

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and crystal structure of the precursor ligand, 1,3-bis­(bis­(2-pyrid­yl)methyl­ene)amino)­urea, see: Manoj et al. (2005 ▶). For a tetra­nuclear iron(II) complex based on a deriv­ative of the title compound, see: Wu et al. (2009 ▶).

Experimental

Crystal data

C23H19N8OBF4 M = 510.27 Triclinic, a = 7.9187 (16) Å b = 10.626 (2) Å c = 13.623 (3) Å α = 90.03 (3)° β = 91.50 (3)° γ = 97.85 (3)° V = 1135.1 (4) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 123 K 0.22 × 0.19 × 0.16 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.974, T max = 0.981 18299 measured reflections 5175 independent reflections 4025 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.151 S = 0.98 5175 reflections 346 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.68 e Å−3 Δρmin = −0.49 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811025359/ez2251sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811025359/ez2251Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811025359/ez2251Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H19N8O+·BF4Z = 2
Mr = 510.27F(000) = 524
Triclinic, P1Dx = 1.493 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.9187 (16) ÅCell parameters from 3505 reflections
b = 10.626 (2) Åθ = 2.3–26.7°
c = 13.623 (3) ŵ = 0.12 mm1
α = 90.03 (3)°T = 123 K
β = 91.50 (3)°Block, colorless
γ = 97.85 (3)°0.22 × 0.19 × 0.16 mm
V = 1135.1 (4) Å3
Bruker APEXII CCD area-detector diffractometer5175 independent reflections
Radiation source: fine-focus sealed tube4025 reflections with I > 2σ(I)
graphiteRint = 0.032
φ and ω scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −10→10
Tmin = 0.974, Tmax = 0.981k = −13→13
18299 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151H atoms treated by a mixture of independent and constrained refinement
S = 0.98w = 1/[σ2(Fo2) + (0.1033P)2 + 0.3032P] where P = (Fo2 + 2Fc2)/3
5175 reflections(Δ/σ)max < 0.001
346 parametersΔρmax = 0.68 e Å3
0 restraintsΔρmin = −0.49 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
H1−0.020 (3)0.896 (2)0.6632 (16)0.033 (6)*
H300.224 (3)0.592 (2)0.5650 (17)0.041 (6)*
H400.141 (3)0.567 (2)0.3285 (17)0.038 (6)*
O10.07813 (16)0.75955 (10)0.40804 (8)0.0215 (3)
N10.05189 (17)0.93425 (12)0.70991 (9)0.0151 (3)
N20.16150 (16)0.75693 (12)0.60077 (9)0.0149 (3)
N30.17522 (17)0.65646 (12)0.54249 (9)0.0147 (3)
N40.16693 (18)0.56751 (12)0.38758 (10)0.0164 (3)
N60.15116 (17)0.43582 (12)0.22247 (9)0.0178 (3)
N70.20613 (16)0.14392 (12)0.42932 (9)0.0154 (3)
N80.32921 (18)0.55934 (13)0.69471 (10)0.0210 (3)
N50.21894 (16)0.46491 (12)0.43220 (9)0.0147 (3)
C130.24217 (19)0.36556 (14)0.38154 (11)0.0143 (3)
C80.27284 (19)0.65124 (14)0.74875 (11)0.0163 (3)
C190.22420 (19)0.34758 (14)0.27322 (11)0.0152 (3)
C140.29165 (19)0.26067 (14)0.44455 (11)0.0142 (3)
C200.2835 (2)0.24569 (15)0.22615 (12)0.0193 (3)
H200.33780.18780.26210.023*
C150.4159 (2)0.28667 (15)0.51871 (11)0.0175 (3)
H150.47290.36850.52760.021*
C50.2903 (2)0.93506 (16)0.81632 (12)0.0219 (4)
H50.38170.89710.84080.026*
C10.13426 (19)0.66862 (14)0.44403 (11)0.0152 (3)
C160.4535 (2)0.18811 (15)0.57937 (11)0.0185 (3)
H160.53660.20260.62910.022*
C60.1830 (2)0.87492 (14)0.74368 (11)0.0158 (3)
C170.3646 (2)0.06836 (15)0.56384 (11)0.0183 (3)
H170.38670.00080.60330.022*
C90.2753 (2)0.64769 (16)0.85125 (12)0.0207 (3)
H90.23260.71020.88710.025*
C180.2421 (2)0.05004 (14)0.48887 (11)0.0174 (3)
H180.1821−0.03080.47940.021*
C70.20552 (19)0.75424 (14)0.69332 (11)0.0151 (3)
C120.3918 (2)0.46578 (17)0.74277 (13)0.0261 (4)
H120.43090.40250.70590.031*
C20.0211 (2)1.04672 (15)0.74398 (12)0.0208 (3)
H2−0.07121.08310.71890.025*
C230.1328 (2)0.42228 (16)0.12492 (12)0.0218 (4)
H230.08450.48380.08960.026*
C220.1824 (2)0.32125 (17)0.07416 (12)0.0245 (4)
H220.16340.31350.00660.029*
C100.3423 (2)0.54963 (16)0.89862 (12)0.0237 (4)
H100.34670.54650.96690.028*
C110.4023 (2)0.45699 (16)0.84425 (13)0.0254 (4)
H110.44850.39050.87450.030*
C210.2605 (2)0.23194 (16)0.12549 (12)0.0239 (4)
H210.29700.16390.09300.029*
C30.1261 (2)1.10889 (17)0.81633 (13)0.0276 (4)
H30.10611.18740.84010.033*
C40.2611 (2)1.05221 (18)0.85257 (13)0.0284 (4)
H40.33301.09250.90150.034*
B10.2959 (3)0.8076 (2)0.10945 (17)0.0306 (5)
F10.3407 (2)0.7618 (2)0.20065 (11)0.0788 (5)
F20.42071 (15)0.78336 (12)0.04479 (8)0.0381 (3)
F30.14286 (17)0.73994 (14)0.07990 (12)0.0618 (4)
F40.2908 (2)0.93300 (14)0.11734 (17)0.0898 (7)
U11U22U33U12U13U23
O10.0329 (7)0.0149 (6)0.0180 (6)0.0091 (5)−0.0041 (5)−0.0001 (4)
N10.0181 (7)0.0144 (6)0.0127 (6)0.0024 (5)−0.0015 (5)−0.0014 (5)
N20.0157 (6)0.0142 (6)0.0147 (6)0.0021 (5)0.0002 (5)−0.0019 (5)
N30.0194 (7)0.0118 (6)0.0135 (6)0.0049 (5)−0.0013 (5)−0.0010 (5)
N40.0245 (7)0.0134 (6)0.0120 (6)0.0052 (5)−0.0028 (5)−0.0002 (5)
N60.0194 (7)0.0182 (7)0.0157 (6)0.0022 (5)−0.0008 (5)−0.0007 (5)
N70.0172 (6)0.0135 (6)0.0157 (6)0.0031 (5)0.0009 (5)−0.0016 (5)
N80.0269 (8)0.0194 (7)0.0181 (7)0.0082 (6)−0.0022 (6)−0.0005 (5)
N50.0164 (6)0.0116 (6)0.0160 (6)0.0017 (5)−0.0014 (5)0.0013 (5)
C130.0139 (7)0.0139 (7)0.0147 (7)0.0008 (6)−0.0005 (6)−0.0006 (6)
C80.0141 (7)0.0181 (8)0.0165 (7)0.0019 (6)−0.0017 (6)0.0001 (6)
C190.0150 (7)0.0151 (7)0.0147 (7)−0.0008 (6)0.0006 (6)−0.0001 (6)
C140.0158 (7)0.0130 (7)0.0145 (7)0.0037 (6)0.0028 (6)−0.0017 (5)
C200.0224 (8)0.0177 (8)0.0180 (8)0.0028 (6)0.0036 (6)0.0002 (6)
C150.0176 (8)0.0151 (7)0.0194 (8)0.0012 (6)−0.0011 (6)−0.0011 (6)
C50.0204 (8)0.0261 (9)0.0191 (8)0.0040 (7)−0.0034 (6)−0.0050 (6)
C10.0165 (7)0.0138 (7)0.0150 (7)0.0015 (6)−0.0007 (6)−0.0008 (6)
C160.0180 (8)0.0226 (8)0.0158 (7)0.0058 (6)−0.0024 (6)−0.0003 (6)
C60.0167 (7)0.0172 (7)0.0135 (7)0.0025 (6)0.0015 (6)−0.0004 (6)
C170.0205 (8)0.0181 (8)0.0175 (7)0.0064 (6)0.0025 (6)0.0050 (6)
C90.0222 (8)0.0231 (8)0.0172 (8)0.0049 (7)0.0000 (6)0.0001 (6)
C180.0199 (8)0.0130 (7)0.0196 (8)0.0028 (6)0.0027 (6)−0.0007 (6)
C70.0139 (7)0.0157 (7)0.0158 (7)0.0020 (6)0.0008 (6)−0.0005 (6)
C120.0361 (10)0.0214 (8)0.0229 (9)0.0128 (7)−0.0034 (7)−0.0009 (7)
C20.0259 (9)0.0180 (8)0.0196 (8)0.0070 (6)0.0004 (7)−0.0017 (6)
C230.0246 (9)0.0244 (8)0.0159 (8)0.0025 (7)−0.0027 (6)0.0009 (6)
C220.0321 (10)0.0275 (9)0.0125 (8)−0.0011 (7)0.0006 (7)−0.0027 (6)
C100.0281 (9)0.0266 (9)0.0158 (8)0.0020 (7)−0.0031 (7)0.0044 (6)
C110.0306 (9)0.0218 (8)0.0246 (9)0.0080 (7)−0.0058 (7)0.0057 (7)
C210.0310 (9)0.0212 (8)0.0195 (8)0.0024 (7)0.0068 (7)−0.0050 (6)
C30.0351 (10)0.0214 (9)0.0266 (9)0.0056 (7)−0.0011 (8)−0.0122 (7)
C40.0287 (9)0.0302 (9)0.0252 (9)0.0013 (7)−0.0055 (7)−0.0130 (7)
B10.0283 (11)0.0281 (11)0.0357 (12)0.0049 (9)−0.0021 (9)−0.0079 (9)
F10.0849 (13)0.1169 (15)0.0361 (8)0.0202 (11)−0.0023 (8)0.0033 (9)
F20.0329 (6)0.0449 (7)0.0360 (6)0.0037 (5)−0.0016 (5)−0.0140 (5)
F30.0313 (7)0.0607 (9)0.0918 (12)0.0014 (6)−0.0033 (7)−0.0231 (8)
F40.0708 (12)0.0280 (8)0.174 (2)0.0124 (7)0.0381 (12)−0.0134 (10)
O1—C11.2157 (18)C5—C41.389 (2)
N1—C21.337 (2)C5—H50.9300
N1—C61.357 (2)C16—C171.381 (2)
N1—H10.90 (2)C16—H160.9300
N2—C71.301 (2)C6—C71.488 (2)
N2—N31.3481 (18)C17—C181.385 (2)
N3—C11.3820 (19)C17—H170.9300
N3—H300.89 (2)C9—C101.385 (2)
N4—N51.3557 (17)C9—H90.9300
N4—C11.378 (2)C18—H180.9300
N4—H400.82 (2)C12—C111.387 (2)
N6—C231.339 (2)C12—H120.9300
N6—C191.349 (2)C2—C31.380 (2)
N7—C181.3418 (19)C2—H20.9300
N7—C141.343 (2)C23—C221.383 (2)
N8—C121.335 (2)C23—H230.9300
N8—C81.353 (2)C22—C211.383 (2)
N5—C131.297 (2)C22—H220.9300
C13—C191.489 (2)C10—C111.374 (3)
C13—C141.495 (2)C10—H100.9300
C8—C91.396 (2)C11—H110.9300
C8—C71.480 (2)C21—H210.9300
C19—C201.399 (2)C3—C41.378 (3)
C14—C151.392 (2)C3—H30.9300
C20—C211.384 (2)C4—H40.9300
C20—H200.9300B1—F41.342 (3)
C15—C161.393 (2)B1—F31.373 (3)
C15—H150.9300B1—F11.390 (3)
C5—C61.384 (2)B1—F21.391 (3)
C2—N1—C6123.20 (14)C16—C17—H17120.4
C2—N1—H1117.6 (14)C18—C17—H17120.4
C6—N1—H1119.2 (14)C10—C9—C8118.98 (15)
C7—N2—N3120.02 (13)C10—C9—H9120.5
N2—N3—C1116.77 (13)C8—C9—H9120.5
N2—N3—H30120.6 (15)N7—C18—C17122.81 (14)
C1—N3—H30121.9 (15)N7—C18—H18118.6
N5—N4—C1119.28 (13)C17—C18—H18118.6
N5—N4—H40121.7 (16)N2—C7—C8128.54 (14)
C1—N4—H40118.4 (16)N2—C7—C6111.30 (13)
C23—N6—C19118.19 (14)C8—C7—C6120.15 (13)
C18—N7—C14118.10 (13)N8—C12—C11124.13 (16)
C12—N8—C8117.68 (14)N8—C12—H12117.9
C13—N5—N4120.72 (13)C11—C12—H12117.9
N5—C13—C19127.73 (14)N1—C2—C3120.10 (16)
N5—C13—C14112.55 (13)N1—C2—H2119.9
C19—C13—C14119.72 (13)C3—C2—H2119.9
N8—C8—C9121.70 (14)N6—C23—C22123.18 (16)
N8—C8—C7116.38 (13)N6—C23—H23118.4
C9—C8—C7121.90 (14)C22—C23—H23118.4
N6—C19—C20121.65 (14)C21—C22—C23118.89 (15)
N6—C19—C13116.70 (13)C21—C22—H22120.6
C20—C19—C13121.63 (14)C23—C22—H22120.6
N7—C14—C15122.42 (14)C11—C10—C9119.63 (15)
N7—C14—C13117.28 (13)C11—C10—H10120.2
C15—C14—C13120.22 (13)C9—C10—H10120.2
C21—C20—C19119.31 (15)C10—C11—C12117.84 (15)
C21—C20—H20120.3C10—C11—H11121.1
C19—C20—H20120.3C12—C11—H11121.1
C14—C15—C16118.96 (14)C22—C21—C20118.71 (15)
C14—C15—H15120.5C22—C21—H21120.6
C16—C15—H15120.5C20—C21—H21120.6
C6—C5—C4119.88 (16)C4—C3—C2118.64 (16)
C6—C5—H5120.1C4—C3—H3120.7
C4—C5—H5120.1C2—C3—H3120.7
O1—C1—N4121.74 (14)C3—C4—C5120.25 (16)
O1—C1—N3124.77 (14)C3—C4—H4119.9
N4—C1—N3113.48 (13)C5—C4—H4119.9
C17—C16—C15118.44 (14)F4—B1—F3113.43 (19)
C17—C16—H16120.8F4—B1—F1108.7 (2)
C15—C16—H16120.8F3—B1—F1107.76 (19)
N1—C6—C5117.93 (14)F4—B1—F2110.79 (19)
N1—C6—C7116.20 (13)F3—B1—F2108.98 (17)
C5—C6—C7125.70 (14)F1—B1—F2106.95 (17)
C16—C17—C18119.25 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1···N7i0.90 (2)1.92 (2)2.792 (2)163.5 (15)
N3—H30···N80.88 (2)1.99 (2)2.658 (2)132.1 (19)
N4—H40···N60.83 (2)2.02 (2)2.640 (2)132 (2)
C2—H2···O1ii0.932.413.083 (2)129.(1)
C18—H18···O1iii0.932.463.355 (2)162.(1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N7i0.90 (2)1.92 (2)2.792 (2)163.5 (15)
N3—H30⋯N80.88 (2)1.99 (2)2.658 (2)132.1 (19)
N4—H40⋯N60.83 (2)2.02 (2)2.640 (2)132 (2)
C2—H2⋯O1ii0.932.413.083 (2)129 (1)
C18—H18⋯O1iii0.932.463.355 (2)162 (1)

Symmetry codes: (i) ; (ii) ; (iii) .

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