Literature DB >> 22090871

[Bis(pyridin-2-ylmeth-yl) ether]trichlorido-rhodium(III) dichloro-methane monosolvate: unusual hydrolysis of the methyl-ene bridge in (pyrazolylmeth-yl)pyridine.

Stephen O Ojwach, Bernard Omondi, James Darkwa.   

Abstract

In the title compound, [RhCl(3)(C(12)H(12)N(2)O)]·CH(2)Cl(2), the Rh(III) atom shows a slightly distorted octa-hedral geometry being coordinated by two N atoms and one O atom from the 2,2'-(oxydimethanedi-yl)dipyridine ligand and three Cl atoms. Two Cl atoms adopt a trans arrangement to the two pyridyl N atoms, while the third Cl atom and the O atoms occupy the axial site. The Rh-Cl bonds that are trans to the pyridyl N atoms are slightly longer than the Rh-Cl bond distance trans to the O atom.

Entities:  

Year:  2011        PMID: 22090871      PMCID: PMC3212169          DOI: 10.1107/S1600536811027644

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogenation of n class="Chemical">olefins, see: Samec et al. (2006 ▶); Xu et al. (2009 ▶); Chalid et al. (2011 ▶); Liu et al. (2011 ▶). For multidentate N-containing ligands, see: Dayan & Centikaya (2007 ▶); Deng et al. (2005 ▶). For pyrazolyl-based transition metal complexes as catalysts, see: Ojwach & Darkwa (2010 ▶) and references therein. For structures bearing the 2,2′-(oxydimethanedi­yl)dipyridine ligand, see: Nanty et al. (2000 ▶) and references therein.

Experimental

Crystal data

[RhCl3(C12n class="Species">H12N2O)]·CH2Cl2 M = 494.42 Monoclinic, a = 9.5360 (18) Å b = 12.527 (2) Å c = 14.340 (3) Å β = 95.071 (4)° V = 1706.3 (6) Å3 Z = 4 Mo Kα radiation μ = 1.78 mm−1 T = 100 K 0.14 × 0.13 × 0.05 mm

Data collection

Bruker X8 APEXII 4K KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.788, T max = 0.916 30694 measured reflections 4276 independent reflections 2925 reflections with I > 2σ(I) R int = 0.102

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.139 S = 1.08 4276 reflections 199 parameters H-atom parameters constrained Δρmax = 1.50 e Å−3 Δρmin = −1.25 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT-Plus (Bruker, 2007 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶) and ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811027644/om2440sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811027644/om2440Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[RhCl3(C12H12N2O)]·CH2Cl2F(000) = 976
Mr = 494.42Dx = 1.925 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 31705 reflections
a = 9.5360 (18) Åθ = 2.1–28.6°
b = 12.527 (2) ŵ = 1.78 mm1
c = 14.340 (3) ÅT = 100 K
β = 95.071 (4)°Block, brown
V = 1706.3 (6) Å30.14 × 0.13 × 0.05 mm
Z = 4
Bruker X8 APEXII 4K KappaCCD diffractometer2925 reflections with I > 2σ(I)
graphiteRint = 0.102
φ and ω scansθmax = 28.6°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −12→12
Tmin = 0.788, Tmax = 0.916k = −15→16
30694 measured reflectionsl = −19→19
4276 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0602P)2 + 6.0697P] where P = (Fo2 + 2Fc2)/3
4276 reflections(Δ/σ)max < 0.001
199 parametersΔρmax = 1.50 e Å3
0 restraintsΔρmin = −1.25 e Å3
Experimental. The intensity data was collected on a Bruker X8 Apex 4 K CCD diffractometer using an exposure time of 20 sec/per frame. A total of 3527 frames were collected with a frame width of 0.5° covering upto θ = 28.57° with 99.8% completeness accomplished.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. >>> The Following ALERTS were generated <<< Format: alert-number_ALERT_alert-type_alert-level text 973_ALERT_2_B Large Calcd. Positive Residual Density on Rh1 1.53 e A-3 Difference map does not reveal any missing peaks, R factor is 4.8% 342_ALERT_3_C Low Bond Precision on C—C Bonds (x 1000) Ang.. 9 083_ALERT_2_G SHELXL Second Parameter in WGHT Unusually Large. 6.07 960_ALERT_3_G Number of Intensities with I. LT. - 2*sig(I).. 7 912_ALERT_4_C Missing # of FCF Reflections Above STh/L= 0.600 76Noted.
xyzUiso*/Ueq
C10.9453 (6)0.3170 (5)0.5707 (4)0.0220 (12)
C20.9516 (6)0.3990 (5)0.6344 (4)0.0250 (13)
H20.99820.38930.69520.03*
C30.8896 (7)0.4959 (5)0.6095 (4)0.0286 (14)
H30.89360.55380.65250.034*
C40.8218 (7)0.5068 (5)0.5210 (4)0.0284 (14)
H40.77890.57270.50220.034*
C50.8166 (6)0.4224 (5)0.4604 (4)0.0238 (13)
H50.76840.430.39990.029*
C61.0152 (6)0.2118 (5)0.5914 (4)0.0213 (12)
H6A1.11580.21670.57970.026*
H6B1.01010.1940.65830.026*
C70.8409 (6)0.0651 (5)0.5762 (4)0.0240 (13)
H7A0.85950.06720.64520.029*
H7B0.8459−0.01030.5560.029*
C80.6967 (6)0.1079 (5)0.5489 (4)0.0217 (12)
C90.5837 (6)0.0877 (5)0.6005 (4)0.0248 (13)
H90.59730.050.65810.03*
C100.4508 (7)0.1230 (5)0.5677 (4)0.0285 (14)
H100.3720.110.60230.034*
C110.4352 (6)0.1776 (5)0.4833 (4)0.0284 (14)
H110.34470.20140.45890.034*
C120.5499 (6)0.1970 (5)0.4353 (4)0.0272 (13)
H120.53810.23530.3780.033*
C130.5353 (9)0.4120 (7)0.6578 (7)0.053 (2)
H13A0.61650.38890.70090.064*
H13B0.54670.38120.59530.064*
N10.8778 (5)0.3292 (4)0.4846 (3)0.0179 (10)
N20.6797 (5)0.1632 (4)0.4675 (3)0.0212 (10)
O10.9483 (4)0.1273 (3)0.5336 (3)0.0204 (8)
Cl11.08727 (15)0.21896 (12)0.35869 (10)0.0231 (3)
Cl20.76119 (16)0.27205 (13)0.27541 (10)0.0255 (3)
Cl30.83695 (15)0.02382 (12)0.33886 (9)0.0231 (3)
Cl40.5347 (2)0.55102 (18)0.64998 (18)0.0583 (6)
Cl50.3773 (2)0.36285 (18)0.69904 (14)0.0513 (5)
Rh10.86208 (5)0.19166 (4)0.40861 (3)0.01818 (13)
U11U22U33U12U13U23
C10.020 (3)0.023 (3)0.025 (3)−0.002 (2)0.010 (2)0.002 (2)
C20.026 (3)0.028 (4)0.021 (3)−0.007 (3)0.006 (2)0.003 (2)
C30.037 (4)0.018 (3)0.032 (3)−0.002 (3)0.014 (3)−0.004 (2)
C40.030 (3)0.018 (3)0.039 (3)0.003 (2)0.011 (3)0.002 (3)
C50.023 (3)0.025 (3)0.024 (3)0.002 (2)0.006 (2)0.006 (2)
C60.018 (3)0.019 (3)0.026 (3)−0.001 (2)0.001 (2)−0.001 (2)
C70.025 (3)0.023 (3)0.024 (3)−0.002 (2)0.007 (2)0.005 (2)
C80.023 (3)0.018 (3)0.024 (3)−0.003 (2)0.005 (2)0.000 (2)
C90.026 (3)0.025 (3)0.024 (3)−0.007 (3)0.007 (2)−0.002 (2)
C100.023 (3)0.029 (4)0.035 (3)−0.006 (3)0.010 (3)−0.006 (3)
C110.016 (3)0.029 (4)0.039 (3)−0.002 (2)−0.001 (2)−0.004 (3)
C120.024 (3)0.027 (4)0.029 (3)−0.004 (3)0.000 (2)−0.005 (3)
C130.042 (5)0.040 (5)0.077 (6)0.013 (4)0.008 (4)0.013 (4)
N10.016 (2)0.016 (3)0.023 (2)−0.0009 (18)0.0045 (18)0.0013 (18)
N20.020 (2)0.021 (3)0.023 (2)−0.0013 (19)0.0039 (19)−0.0011 (19)
O10.018 (2)0.022 (2)0.0219 (19)−0.0005 (16)0.0038 (15)0.0005 (16)
Cl10.0195 (7)0.0223 (8)0.0283 (7)−0.0014 (5)0.0060 (5)−0.0002 (5)
Cl20.0257 (7)0.0280 (8)0.0227 (7)0.0011 (6)0.0018 (5)0.0037 (6)
Cl30.0247 (7)0.0205 (8)0.0244 (6)−0.0026 (6)0.0041 (5)−0.0008 (5)
Cl40.0419 (12)0.0495 (13)0.0855 (16)0.0110 (9)0.0173 (11)0.0111 (11)
Cl50.0472 (12)0.0535 (13)0.0525 (11)0.0010 (9)0.0010 (9)0.0028 (9)
Rh10.0174 (2)0.0170 (2)0.0204 (2)−0.00075 (18)0.00326 (15)0.00144 (18)
C1—N11.349 (7)C8—C91.383 (8)
C1—C21.373 (8)C9—C101.385 (9)
C1—C61.495 (8)C9—H90.95
C2—C31.384 (9)C10—C111.387 (9)
C2—H20.95C10—H100.95
C3—C41.380 (9)C11—C121.365 (8)
C3—H30.95C11—H110.95
C4—C51.367 (9)C12—N21.350 (8)
C4—H40.95C12—H120.95
C5—N11.336 (7)C13—Cl41.745 (9)
C5—H50.95C13—Cl51.777 (9)
C6—O11.456 (7)C13—H13A0.99
C6—H6A0.99C13—H13B0.99
C6—H6B0.99N1—Rh12.037 (5)
C7—O11.462 (7)N2—Rh12.031 (5)
C7—C81.496 (8)O1—Rh12.069 (4)
C7—H7A0.99Cl1—Rh12.3479 (15)
C7—H7B0.99Cl2—Rh12.2941 (15)
C8—N21.355 (7)Cl3—Rh12.3315 (15)
N1—C1—C2120.8 (5)C12—C11—C10120.0 (6)
N1—C1—C6116.8 (5)C12—C11—H11120
C2—C1—C6122.3 (5)C10—C11—H11120
C1—C2—C3119.5 (6)N2—C12—C11121.5 (6)
C1—C2—H2120.2N2—C12—H12119.2
C3—C2—H2120.2C11—C12—H12119.2
C4—C3—C2118.6 (6)Cl4—C13—Cl5111.6 (4)
C4—C3—H3120.7Cl4—C13—H13A109.3
C2—C3—H3120.7Cl5—C13—H13A109.3
C5—C4—C3119.8 (6)Cl4—C13—H13B109.3
C5—C4—H4120.1Cl5—C13—H13B109.3
C3—C4—H4120.1H13A—C13—H13B108
N1—C5—C4121.3 (6)C5—N1—C1119.9 (5)
N1—C5—H5119.3C5—N1—Rh1126.1 (4)
C4—C5—H5119.3C1—N1—Rh1113.5 (4)
O1—C6—C1111.2 (5)C12—N2—C8119.4 (5)
O1—C6—H6A109.4C12—N2—Rh1126.6 (4)
C1—C6—H6A109.4C8—N2—Rh1114.0 (4)
O1—C6—H6B109.4C6—O1—C7116.0 (4)
C1—C6—H6B109.4C6—O1—Rh1109.3 (3)
H6A—C6—H6B108C7—O1—Rh1109.3 (3)
O1—C7—C8111.2 (5)N2—Rh1—N187.23 (19)
O1—C7—H7A109.4N2—Rh1—O181.99 (17)
C8—C7—H7A109.4N1—Rh1—O182.03 (17)
O1—C7—H7B109.4N2—Rh1—Cl296.40 (14)
C8—C7—H7B109.4N1—Rh1—Cl294.57 (13)
H7A—C7—H7B108N2—Rh1—Cl387.75 (14)
N2—C8—C9121.0 (6)O1—Rh1—Cl392.19 (12)
N2—C8—C7116.5 (5)Cl2—Rh1—Cl391.09 (6)
C9—C8—C7122.4 (5)N1—Rh1—Cl190.78 (13)
C8—C9—C10119.5 (6)O1—Rh1—Cl190.98 (11)
C8—C9—H9120.2Cl2—Rh1—Cl190.56 (5)
C10—C9—H9120.2Cl3—Rh1—Cl193.59 (5)
C9—C10—C11118.5 (6)N1—Rh1—Cl3172.82 (13)
C9—C10—H10120.7N2—Rh1—Cl1172.89 (14)
C11—C10—H10120.7O1—Rh1—Cl2176.29 (12)
N1—C1—C2—C3−0.9 (9)C12—N2—Rh1—N187.7 (5)
C6—C1—C2—C3177.4 (5)C8—N2—Rh1—N1−89.7 (4)
C1—C2—C3—C40.6 (9)C12—N2—Rh1—O1170.1 (5)
C2—C3—C4—C50.4 (9)C8—N2—Rh1—O1−7.3 (4)
C3—C4—C5—N1−1.0 (9)C12—N2—Rh1—Cl2−6.6 (5)
N1—C1—C6—O1−25.6 (7)C8—N2—Rh1—Cl2176.1 (4)
C2—C1—C6—O1156.1 (5)C12—N2—Rh1—Cl3−97.4 (5)
O1—C7—C8—N224.6 (7)C8—N2—Rh1—Cl385.2 (4)
O1—C7—C8—C9−158.8 (5)C12—N2—Rh1—Cl1161.6 (9)
N2—C8—C9—C101.2 (9)C8—N2—Rh1—Cl1−15.8 (15)
C7—C8—C9—C10−175.2 (6)C5—N1—Rh1—N2−84.2 (5)
C8—C9—C10—C110.1 (9)C1—N1—Rh1—N288.5 (4)
C9—C10—C11—C12−1.1 (9)C5—N1—Rh1—O1−166.5 (5)
C10—C11—C12—N20.8 (10)C1—N1—Rh1—O16.2 (4)
C4—C5—N1—C10.7 (8)C5—N1—Rh1—Cl212.0 (5)
C4—C5—N1—Rh1173.0 (4)C1—N1—Rh1—Cl2−175.3 (3)
C2—C1—N1—C50.3 (8)C5—N1—Rh1—Cl3−129.9 (10)
C6—C1—N1—C5−178.1 (5)C1—N1—Rh1—Cl342.8 (13)
C2—C1—N1—Rh1−172.9 (4)C5—N1—Rh1—Cl1102.6 (4)
C6—C1—N1—Rh18.7 (6)C1—N1—Rh1—Cl1−84.7 (4)
C11—C12—N2—C80.6 (9)C6—O1—Rh1—N2−107.8 (3)
C11—C12—N2—Rh1−176.7 (5)C7—O1—Rh1—N220.1 (4)
C9—C8—N2—C12−1.6 (9)C6—O1—Rh1—N1−19.5 (3)
C7—C8—N2—C12175.1 (5)C7—O1—Rh1—N1108.4 (4)
C9—C8—N2—Rh1176.0 (4)C6—O1—Rh1—Cl2−43 (2)
C7—C8—N2—Rh1−7.4 (7)C7—O1—Rh1—Cl284.6 (19)
C1—C6—O1—C7−95.4 (5)C6—O1—Rh1—Cl3164.8 (3)
C1—C6—O1—Rh128.7 (5)C7—O1—Rh1—Cl3−67.3 (3)
C8—C7—O1—C695.3 (5)C6—O1—Rh1—Cl171.2 (3)
C8—C7—O1—Rh1−28.7 (5)C7—O1—Rh1—Cl1−161.0 (3)
Table 1

Selected bond lengths (Å)

N1—Rh12.037 (5)
N2—Rh12.031 (5)
O1—Rh12.069 (4)
Cl1—Rh12.3479 (15)
Cl2—Rh12.2941 (15)
Cl3—Rh12.3315 (15)
  3 in total

1.  fac-tricarbonyl

Authors: 
Journal:  Acta Crystallogr C       Date:  2000-01       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Mechanistic aspects of transition metal-catalyzed hydrogen transfer reactions.

Authors:  Joseph S M Samec; Jan-E Bäckvall; Pher G Andersson; Peter Brandt
Journal:  Chem Soc Rev       Date:  2006-01-23       Impact factor: 54.564

  3 in total

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