Literature DB >> 22086843

Diversity of animal small RNA pathways and their biological utility.

Katsutomo Okamura1.   

Abstract

Higher eukaryotes employ extensive post-transcriptional gene regulation to accomplish fine control of gene expression. The microRNA (miRNA) family plays important roles in the post-transcriptional gene regulation of broad networks of target mRNA expression. Most miRNAs are generated by a conserved mechanism involving two RNase III enzymes Drosha and Dicer. However, work from the past few years has uncovered diverse noncanonical miRNA pathways, which exploit a variety of other RNA processing enzymes. In addition, the discovery of another abundant small RNA family, endogenous short interfering RNAs (endo-siRNAs), has also broadened the catalogs of short regulatory RNAs. This review highlights recent studies that revealed novel small RNA biogenesis pathways, and discusses their relevance to gene regulatory networks.
Copyright © 2011 John Wiley & Sons, Ltd.

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Year:  2011        PMID: 22086843     DOI: 10.1002/wrna.113

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  31 in total

1.  Efficient and accurate analysis of microRNA using a specific extension sequence.

Authors:  Jae Hyun Ahn; Jiwon Kwak; Jae-Hoon Lee; Soo Suk Lee
Journal:  Mol Biol Rep       Date:  2018-05-30       Impact factor: 2.316

2.  Importance of miRNA stability and alternative primary miRNA isoforms in gene regulation during Drosophila development.

Authors:  Li Zhou; Mandy Yu Theng Lim; Prameet Kaur; Abil Saj; Diane Bortolamiol-Becet; Vikneswaran Gopal; Nicholas Tolwinski; Greg Tucker-Kellogg; Katsutomo Okamura
Journal:  Elife       Date:  2018-07-19       Impact factor: 8.140

3.  Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals.

Authors:  Katsutomo Okamura; Erik Ladewig; Li Zhou; Eric C Lai
Journal:  Genes Dev       Date:  2013-03-27       Impact factor: 11.361

Review 4.  Regulatory role of long non-coding RNAs during reproductive disease.

Authors:  Kangsheng Liu; Xiaodong Mao; Yajun Chen; Taiping Li; Hua Ton
Journal:  Am J Transl Res       Date:  2018-01-15       Impact factor: 4.060

5.  Specific PIWI-Interacting RNAs and Related Small Noncoding RNAs Are Associated With Ovarian Aging in Ames Dwarf (df/df) Mice.

Authors:  Joseph M Dhahbi; Joe W Chen; Supriya Bhupathy; Hani Atamna; Marcelo B Cavalcante; Tatiana D Saccon; Allancer D C Nunes; Jeffrey B Mason; Augusto Schneider; Michal M Masternak
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2021-08-13       Impact factor: 6.053

Review 6.  Nonsense-mediated mRNA decay: inter-individual variability and human disease.

Authors:  Lam Son Nguyen; Miles F Wilkinson; Jozef Gecz
Journal:  Neurosci Biobehav Rev       Date:  2013-11-14       Impact factor: 8.989

7.  Alternative substrate kinetics of Escherichia coli ribonuclease P: determination of relative rate constants by internal competition.

Authors:  Lindsay E Yandek; Hsuan-Chun Lin; Michael E Harris
Journal:  J Biol Chem       Date:  2013-01-28       Impact factor: 5.157

Review 8.  Processing of snoRNAs as a new source of regulatory non-coding RNAs: snoRNA fragments form a new class of functional RNAs.

Authors:  Marina Falaleeva; Stefan Stamm
Journal:  Bioessays       Date:  2012-11-26       Impact factor: 4.345

9.  Evolution of plasticity in production and transgenerational inheritance of small RNAs under dynamic environmental conditions.

Authors:  Willian T A F Silva; Sarah P Otto; Simone Immler
Journal:  PLoS Genet       Date:  2021-05-26       Impact factor: 5.917

10.  5' tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction.

Authors:  Joseph M Dhahbi; Stephen R Spindler; Hani Atamna; Amy Yamakawa; Dario Boffelli; Patricia Mote; David I K Martin
Journal:  BMC Genomics       Date:  2013-05-02       Impact factor: 3.969

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