Literature DB >> 22086170

PRaTo: a web-tool to select optimal primer pairs for qPCR.

Alberto Nonis1, Marco Scortegagna, Alessandro Nonis, Benedetto Ruperti.   

Abstract

An essential pre-requisite to perform sound quantitative real-time polymerase chain reaction (qPCR) assays is to design outstanding primer pairs. This means they must have a good efficiency and be not prone to produce multiple amplicons or primer dimer products. To circumvent these issues, several softwares are available to help primer design. Although satisfactory computer-aided primer design tools are available for standard PCR, less efforts were done to provide specific methods for selection of optimal primer pairs for qPCR. We have developed PRaTo a web-based tool that enables checking and ranking of primers pairs for their attitude to perform optimally and reliably when used in qPCR experiments. PRaTo is available at http://prato.daapv.unipd.it.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22086170     DOI: 10.1016/j.bbrc.2011.10.148

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  8 in total

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Authors:  Francesco Pinosa; Maura Begheldo; Taras Pasternak; Monica Zermiani; Ivan A Paponov; Alexander Dovzhenko; Gianni Barcaccia; Benedetto Ruperti; Klaus Palme
Journal:  Ann Bot       Date:  2013-11-07       Impact factor: 4.357

2.  Extreme Hypoxic Conditions Induce Selective Molecular Responses and Metabolic Reset in Detached Apple Fruit.

Authors:  Dubravka Cukrov; Monica Zermiani; Stefano Brizzolara; Alessandro Cestaro; Francesco Licausi; Claudio Luchinat; Claudio Santucci; Leonardo Tenori; Hans Van Veen; Andrea Zuccolo; Benedetto Ruperti; Pietro Tonutti
Journal:  Front Plant Sci       Date:  2016-02-16       Impact factor: 5.753

3.  Ethylene negatively regulates transcript abundance of ROP-GAP rheostat-encoding genes and affects apoplastic reactive oxygen species homeostasis in epicarps of cold stored apple fruits.

Authors:  Monica Zermiani; Elisabetta Zonin; Alberto Nonis; Maura Begheldo; Luca Ceccato; Alice Vezzaro; Barbara Baldan; Annarita Trentin; Antonio Masi; Marco Pegoraro; Livio Fadanelli; William Teale; Klaus Palme; Luigi Quintieri; Benedetto Ruperti
Journal:  J Exp Bot       Date:  2015-10-01       Impact factor: 6.992

4.  Nitrate sensing by the maize root apex transition zone: a merged transcriptomic and proteomic survey.

Authors:  Sara Trevisan; Alessandro Manoli; Laura Ravazzolo; Alessandro Botton; Micaela Pivato; Antonio Masi; Silvia Quaggiotti
Journal:  J Exp Bot       Date:  2015-04-23       Impact factor: 6.992

5.  NO homeostasis is a key regulator of early nitrate perception and root elongation in maize.

Authors:  Alessandro Manoli; Maura Begheldo; Andrea Genre; Luisa Lanfranco; Sara Trevisan; Silvia Quaggiotti
Journal:  J Exp Bot       Date:  2013-11-12       Impact factor: 6.992

6.  Nitric Oxide-Mediated Maize Root Apex Responses to Nitrate are Regulated by Auxin and Strigolactones.

Authors:  Alessandro Manoli; Sara Trevisan; Boris Voigt; Ken Yokawa; František Baluška; Silvia Quaggiotti
Journal:  Front Plant Sci       Date:  2016-01-22       Impact factor: 5.753

7.  Plasmid Copy Number Determination by Quantitative Polymerase Chain Reaction.

Authors:  A Anita Artarini; Catur Riani; Debbie S Retnoningrum
Journal:  Sci Pharm       Date:  2016-02-14

8.  The Molecular Determination of Hybridity and Homozygosity Estimates in Breeding Populations of Lettuce (Lactuca sativa L.).

Authors:  Alice Patella; Fabio Palumbo; Giulio Galla; Gianni Barcaccia
Journal:  Genes (Basel)       Date:  2019-11-09       Impact factor: 4.096

  8 in total

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