Literature DB >> 22085960

A master CLOCK hard at work brings rhythm to the transcriptome.

Isaac Edery1.   

Abstract

In this issue of Genes & Development, Abruzzi et al. (pp. 2374-2386) use chromatin immunoprecipitation (ChIP) tiling array assays (ChIP-chip) to show that physical interactions between circadian (≅24-h) clock machineries and genomes are more widespread than previously thought and provide novel insights into how clocks drive daily rhythms in global gene expression.

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Year:  2011        PMID： 22085960      PMCID： PMC3222898          DOI： 10.1101/gad.180984.111

Source DB:  PubMed          Journal:  Genes Dev        ISSN： 0890-9369            Impact factor:   11.361


  40 in total

1.  NEMO/NLK phosphorylates PERIOD to initiate a time-delay phosphorylation circuit that sets circadian clock speed.

Authors:  Joanna C Chiu; Hyuk Wan Ko; Isaac Edery
Journal:  Cell       Date:  2011-04-29       Impact factor: 41.582

Review 2.  Clocks not winding down: unravelling circadian networks.

Authors:  Eric E Zhang; Steve A Kay
Journal:  Nat Rev Mol Cell Biol       Date:  2010-11       Impact factor: 94.444

3.  Surprising gene expression patterns within and between PDF-containing circadian neurons in Drosophila.

Authors:  Elzbieta Kula-Eversole; Emi Nagoshi; Yuhua Shang; Joseph Rodriguez; Ravi Allada; Michael Rosbash
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-12       Impact factor: 11.205

4.  Proof-by-synthesis of the transcriptional logic of mammalian circadian clocks.

Authors:  Maki Ukai-Tadenuma; Takeya Kasukawa; Hiroki R Ueda
Journal:  Nat Cell Biol       Date:  2008-09-21       Impact factor: 28.824

5.  Circadian conformational change of the Neurospora clock protein FREQUENCY triggered by clustered hyperphosphorylation of a basic domain.

Authors:  Christina Querfurth; Axel C R Diernfellner; Elan Gin; Erik Malzahn; Thomas Höfer; Michael Brunner
Journal:  Mol Cell       Date:  2011-09-02       Impact factor: 17.970

6.  A molecular mechanism for circadian clock negative feedback.

Authors:  Hao A Duong; Maria S Robles; Darko Knutti; Charles J Weitz
Journal:  Science       Date:  2011-06-17       Impact factor: 47.728

7.  Dynamic PER repression mechanisms in the Drosophila circadian clock: from on-DNA to off-DNA.

Authors:  Jerome S Menet; Katharine C Abruzzi; Jennifer Desrochers; Joseph Rodriguez; Michael Rosbash
Journal:  Genes Dev       Date:  2010-02-15       Impact factor: 11.361

Review 8.  Circadian control of global gene expression patterns.

Authors:  Colleen J Doherty; Steve A Kay
Journal:  Annu Rev Genet       Date:  2010       Impact factor: 16.830

Review 9.  The genetics of mammalian circadian order and disorder: implications for physiology and disease.

Authors:  Joseph S Takahashi; Hee-Kyung Hong; Caroline H Ko; Erin L McDearmon
Journal:  Nat Rev Genet       Date:  2008-10       Impact factor: 53.242

10.  Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver.

Authors:  Guillaume Rey; François Cesbron; Jacques Rougemont; Hans Reinke; Michael Brunner; Felix Naef
Journal:  PLoS Biol       Date:  2011-02-22       Impact factor: 8.029
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  6 in total

1.  A morning-induced, phosphorylation-gated repressor times evening gene expression: a new way for circadian clocks to use an old trick.

Authors:  Isaac Edery
Journal:  Mol Cell       Date:  2011-12-09       Impact factor: 17.970

2.  Circadian control of global gene expression by the cyanobacterial master regulator RpaA.

Authors:  Joseph S Markson; Joseph R Piechura; Anna M Puszynska; Erin K O'Shea
Journal:  Cell       Date:  2013-12-05       Impact factor: 41.582

Review 3.  Running for time: circadian rhythms and melanoma.

Authors:  Elitza P Markova-Car; Davor Jurišić; Nataša Ilić; Sandra Kraljević Pavelić
Journal:  Tumour Biol       Date:  2014-04-14

4.  Tracking circadian rhythms of bone mineral deposition in murine calvarial organ cultures.

Authors:  John-David P McElderry; Guisheng Zhao; Alexander Khmaladze; Christopher G Wilson; Renny T Franceschi; Michael D Morris
Journal:  J Bone Miner Res       Date:  2013-08       Impact factor: 6.741

5.  A Homeobox Transcription Factor Scarecrow (SCRO) Negatively Regulates Pdf Neuropeptide Expression through Binding an Identified cis-Acting Element in Drosophila melanogaster.

Authors:  Sudershana Nair; Jae Hoon Bahn; Gyunghee Lee; Siuk Yoo; Jae H Park
Journal:  Mol Neurobiol       Date:  2020-01-16       Impact factor: 5.590

6.  Phosphorylation of a central clock transcription factor is required for thermal but not photic entrainment.

Authors:  Euna Lee; Eun Hee Jeong; Hyun-Jeong Jeong; Evrim Yildirim; Jens T Vanselow; Fanny Ng; Yixiao Liu; Guruswamy Mahesh; Achim Kramer; Paul E Hardin; Isaac Edery; Eun Young Kim
Journal:  PLoS Genet       Date:  2014-08-14       Impact factor: 5.917
  6 in total

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