Literature DB >> 22083734

Standardization in synthetic biology.

Kristian M Müller1, Katja M Arndt.   

Abstract

Synthetic Biology is founded on the idea that complex biological systems are built most effectively when the task is divided in abstracted layers and all required components are readily available and well-described. This requires interdisciplinary collaboration at several levels and a common understanding of the functioning of each component. Standardization of the physical composition and the description of each part is required as well as a controlled vocabulary to aid design and ensure interoperability. Here, we describe standardization initiatives from several disciplines, which can contribute to Synthetic Biology. We provide examples of the concerted standardization efforts of the BioBricks Foundation comprising the request for comments (RFC) and the Registry of Standardized Biological parts as well as the international Genetically Engineered Machine (iGEM) competition.

Mesh:

Year:  2012        PMID: 22083734     DOI: 10.1007/978-1-61779-412-4_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  10 in total

Review 1.  Engineering ecosystems and synthetic ecologies.

Authors:  Michael T Mee; Harris H Wang
Journal:  Mol Biosyst       Date:  2012-10

2.  Synthetic negative feedback circuits using engineered small RNAs.

Authors:  Ciarán L Kelly; Andreas W K Harris; Harrison Steel; Edward J Hancock; John T Heap; Antonis Papachristodoulou
Journal:  Nucleic Acids Res       Date:  2018-10-12       Impact factor: 16.971

3.  Bottlenecks and opportunities for synthetic biology biosafety standards.

Authors:  Lei Pei; Michele Garfinkel; Markus Schmidt
Journal:  Nat Commun       Date:  2022-04-21       Impact factor: 17.694

4.  A portable expression resource for engineering cross-species genetic circuits and pathways.

Authors:  Manish Kushwaha; Howard M Salis
Journal:  Nat Commun       Date:  2015-07-17       Impact factor: 14.919

Review 5.  What Symbionts Teach us about Modularity.

Authors:  Manuel Porcar; Amparo Latorre; Andrés Moya
Journal:  Front Bioeng Biotechnol       Date:  2013-11-04

6.  Are synthetic biology standards applicable in everyday research practice?

Authors:  Huseyin Tas; Adam Amara; Miguel E Cueva; Nadine Bongaerts; Alicia Calvo-Villamañán; Samir Hamadache; Konstantinos Vavitsas
Journal:  Microb Biotechnol       Date:  2020-06-21       Impact factor: 5.813

7.  Multiomics Data Collection, Visualization, and Utilization for Guiding Metabolic Engineering.

Authors:  Somtirtha Roy; Tijana Radivojevic; Mark Forrer; Jose Manuel Marti; Vamshi Jonnalagadda; Tyler Backman; William Morrell; Hector Plahar; Joonhoon Kim; Nathan Hillson; Hector Garcia Martin
Journal:  Front Bioeng Biotechnol       Date:  2021-02-09

8.  A FAIR-compliant parts catalogue for genome engineering and expression control in Saccharomyces cerevisiae.

Authors:  Vasil D'Ambrosio; Lea G Hansen; Jie Zhang; Emil D Jensen; Dushica Arsovska; Marcos Laloux; Tadas Jakočiūnas; Pernille Hjort; Davide De Lucrezia; Serena Marletta; Jay D Keasling; Michael K Jensen
Journal:  Synth Syst Biotechnol       Date:  2022-02-16

9.  The Bacillus BioBrick Box: generation and evaluation of essential genetic building blocks for standardized work with Bacillus subtilis.

Authors:  Jara Radeck; Korinna Kraft; Julia Bartels; Tamara Cikovic; Franziska Dürr; Jennifer Emenegger; Simon Kelterborn; Christopher Sauer; Georg Fritz; Susanne Gebhard; Thorsten Mascher
Journal:  J Biol Eng       Date:  2013-12-02       Impact factor: 4.355

10.  Open source approaches to establishing Roseobacter clade bacteria as synthetic biology chassis for biogeoengineering.

Authors:  Yanika Borg; Aurelija Marija Grigonyte; Philipp Boeing; Bethan Wolfenden; Patrick Smith; William Beaufoy; Simon Rose; Tonderai Ratisai; Alexey Zaikin; Darren N Nesbeth
Journal:  PeerJ       Date:  2016-07-07       Impact factor: 2.984

  10 in total

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