Literature DB >> 22080206

Disease mutations in disordered regions--exception to the rule?

Vladimir Vacic1, Lilia M Iakoucheva.   

Abstract

Intrinsically disordered proteins (IDPs) have been implicated in a number of human diseases, including cancer, diabetes, neurodegenerative and cardiovascular disorders. Although for some of these conditions molecular mechanisms are now better understood, the big picture connecting distinct structural properties and functional repertoire of IDPs to pathogenesis and disease progression is still incomplete. Recent studies suggest that signaling and regulatory roles carried out by IDPs require them to be tightly regulated, and that altered IDP abundance may lead to disease. Here, we propose another link between IDPs and disease that takes into account disease-associated missense mutations located in the intrinsically disordered regions. We argue that such mutations are more prevalent and have larger functional impact than previously thought. In addition, we demonstrate that deleterious amino acid substitutions that cause disorder-to-order transitions are particularly enriched among disease mutations compared to neutral polymorphisms. Finally, we discuss potential differences in functional outcomes between disease mutations in ordered and disordered regions, and challenge the conventional structure-centric view of missense mutations.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22080206      PMCID: PMC3307532          DOI: 10.1039/c1mb05251a

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  55 in total

Review 1.  Flexible nets. The roles of intrinsic disorder in protein interaction networks.

Authors:  A Keith Dunker; Marc S Cortese; Pedro Romero; Lilia M Iakoucheva; Vladimir N Uversky
Journal:  FEBS J       Date:  2005-10       Impact factor: 5.542

Review 2.  Needles in stacks of needles: finding disease-causal variants in a wealth of genomic data.

Authors:  Gregory M Cooper; Jay Shendure
Journal:  Nat Rev Genet       Date:  2011-08-18       Impact factor: 53.242

3.  Unique physical properties and interactions of the domains of methylated DNA binding protein 2.

Authors:  Rajarshi P Ghosh; Tatiana Nikitina; Rachel A Horowitz-Scherer; Lila M Gierasch; Vladimir N Uversky; Kristopher Hite; Jeffrey C Hansen; Christopher L Woodcock
Journal:  Biochemistry       Date:  2010-05-25       Impact factor: 3.162

4.  Intrinsic protein disorder in complete genomes.

Authors:  A K Dunker; Z Obradovic; P Romero; E C Garner; C J Brown
Journal:  Genome Inform Ser Workshop Genome Inform       Date:  2000

5.  The solution structure of the domain from MeCP2 that binds to methylated DNA.

Authors:  R I Wakefield; B O Smith; X Nan; A Free; A Soteriou; D Uhrin; A P Bird; P N Barlow
Journal:  J Mol Biol       Date:  1999-09-03       Impact factor: 5.469

6.  In silico functional profiling of human disease-associated and polymorphic amino acid substitutions.

Authors:  Matthew Mort; Uday S Evani; Vidhya G Krishnan; Kishore K Kamati; Peter H Baenziger; Angshuman Bagchi; Brandon J Peters; Rakesh Sathyesh; Biao Li; Yanan Sun; Bin Xue; Nigam H Shah; Maricel G Kann; David N Cooper; Predrag Radivojac; Sean D Mooney
Journal:  Hum Mutat       Date:  2010-03       Impact factor: 4.878

Review 7.  Intrinsically disordered proteins in human diseases: introducing the D2 concept.

Authors:  Vladimir N Uversky; Christopher J Oldfield; A Keith Dunker
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

8.  Prediction and functional analysis of native disorder in proteins from the three kingdoms of life.

Authors:  J J Ward; J S Sodhi; L J McGuffin; B F Buxton; D T Jones
Journal:  J Mol Biol       Date:  2004-03-26       Impact factor: 5.469

9.  Comparing models of evolution for ordered and disordered proteins.

Authors:  Celeste J Brown; Audra K Johnson; Gary W Daughdrill
Journal:  Mol Biol Evol       Date:  2009-11-18       Impact factor: 16.240

10.  Edgetic perturbation models of human inherited disorders.

Authors:  Quan Zhong; Nicolas Simonis; Qian-Ru Li; Benoit Charloteaux; Fabien Heuze; Niels Klitgord; Stanley Tam; Haiyuan Yu; Kavitha Venkatesan; Danny Mou; Venus Swearingen; Muhammed A Yildirim; Han Yan; Amélie Dricot; David Szeto; Chenwei Lin; Tong Hao; Changyu Fan; Stuart Milstein; Denis Dupuy; Robert Brasseur; David E Hill; Michael E Cusick; Marc Vidal
Journal:  Mol Syst Biol       Date:  2009-11-03       Impact factor: 11.429

View more
  46 in total

Review 1.  Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.

Authors:  Khader Shameer; Lokesh P Tripathi; Krishna R Kalari; Joel T Dudley; Ramanathan Sowdhamini
Journal:  Brief Bioinform       Date:  2015-10-22       Impact factor: 11.622

Review 2.  Reads meet rotamers: structural biology in the age of deep sequencing.

Authors:  Anurag Sethi; Declan Clarke; Jieming Chen; Sushant Kumar; Timur R Galeev; Lynne Regan; Mark Gerstein
Journal:  Curr Opin Struct Biol       Date:  2015-12-01       Impact factor: 6.809

Review 3.  Pathological unfoldomics of uncontrolled chaos: intrinsically disordered proteins and human diseases.

Authors:  Vladimir N Uversky; Vrushank Davé; Lilia M Iakoucheva; Prerna Malaney; Steven J Metallo; Ravi Ramesh Pathak; Andreas C Joerger
Journal:  Chem Rev       Date:  2014-05-15       Impact factor: 60.622

4.  Predicted disorder-to-order transition mutations in IκBα disrupt function.

Authors:  Holly Dembinski; Kevin Wismer; Deepa Balasubramaniam; Hector A Gonzalez; Vera Alverdi; Lilia M Iakoucheva; Elizabeth A Komives
Journal:  Phys Chem Chem Phys       Date:  2014-03-06       Impact factor: 3.676

Review 5.  Gain-of-Function Mutations: An Emerging Advantage for Cancer Biology.

Authors:  Yongsheng Li; Yunpeng Zhang; Xia Li; Song Yi; Juan Xu
Journal:  Trends Biochem Sci       Date:  2019-04-29       Impact factor: 13.807

6.  DisEnrich: Database of Enriched Regions in Human Dark Proteome.

Authors:  Kirill E Medvedev; Jimin Pei; Nick V Grishin
Journal:  Bioinformatics       Date:  2022-01-30       Impact factor: 6.937

Review 7.  Molecular mechanisms of disease-causing missense mutations.

Authors:  Shannon Stefl; Hafumi Nishi; Marharyta Petukh; Anna R Panchenko; Emil Alexov
Journal:  J Mol Biol       Date:  2013-07-16       Impact factor: 5.469

Review 8.  Protein function in precision medicine: deep understanding with machine learning.

Authors:  Burkhard Rost; Predrag Radivojac; Yana Bromberg
Journal:  FEBS Lett       Date:  2016-08-06       Impact factor: 4.124

Review 9.  How do disordered regions achieve comparable functions to structured domains?

Authors:  Natasha S Latysheva; Tilman Flock; Robert J Weatheritt; Sreenivas Chavali; M Madan Babu
Journal:  Protein Sci       Date:  2015-05-15       Impact factor: 6.725

10.  On the specificity of protein-protein interactions in the context of disorder.

Authors:  Kaare Teilum; Johan G Olsen; Birthe B Kragelund
Journal:  Biochem J       Date:  2021-06-11       Impact factor: 3.857

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.