Literature DB >> 22079572

Meta-analysis of microarray gene expression studies on intracranial aneurysms.

C Roder1, H Kasuya, A Harati, M Tatagiba, I Inoue, B Krischek.   

Abstract

The rupture of intracranial aneurysms (IAs) is one of the most devastating neurological conditions known to date. Although treatment has changed dramatically throughout the last decades, the outcome of patients still has a poor prognosis. Besides environmental factors, genomics seem to be a very important factor in the genesis of this disease. Different approaches to decrypt genomic causes were pursued throughout the last years. Microarray gene expression studies comparing aneurysmal and healthy tissue seem to be one of the most promising approaches. However, large amounts of data created with each study, make a comparison or interpretation of results difficult. We analyzed microarray gene expression studies on IAs (vs. control tissue) and compared lists of genes with altered expression provided by the authors. Additionally functional pathway analysis was performed. We identified five microarray gene expression studies analyzing a total of 60 samples of IA tissue (30 ruptured IA, 30 unruptured IA). A total of 507 genes with altered expression were listed, of which 57 showed differences in more than two studies and seven in more than three studies (BCL2, COL1A2, COL3A1, COL5A2, CXCL12, TIMP4, TNC). The meta-analysis of five microarray gene expression studies on IAs revealed seven genes that are very likely to be involved in the genesis of IAs. Further analysis of these genes might provide valuable information on mechanisms causing this disease.
Copyright © 2011 IBRO. Published by Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22079572     DOI: 10.1016/j.neuroscience.2011.10.033

Source DB:  PubMed          Journal:  Neuroscience        ISSN: 0306-4522            Impact factor:   3.590


  18 in total

Review 1.  Smooth muscle cells and the formation, degeneration, and rupture of saccular intracranial aneurysm wall--a review of current pathophysiological knowledge.

Authors:  Juhana Frösen
Journal:  Transl Stroke Res       Date:  2014-04-01       Impact factor: 6.829

2.  MicroRNA and gene expression changes in unruptured human cerebral aneurysms.

Authors:  Kimon Bekelis; Joanna S Kerley-Hamilton; Amy Teegarden; Craig R Tomlinson; Rachael Kuintzle; Nathan Simmons; Robert J Singer; David W Roberts; Manolis Kellis; David A Hendrix
Journal:  J Neurosurg       Date:  2016-02-26       Impact factor: 5.115

3.  Meta-Analysis of Gene Expression Patterns in Animal Models of Prenatal Alcohol Exposure Suggests Role for Protein Synthesis Inhibition and Chromatin Remodeling.

Authors:  Sanja Rogic; Albertina Wong; Paul Pavlidis
Journal:  Alcohol Clin Exp Res       Date:  2016-03-20       Impact factor: 3.455

4.  Differential Gene Expression in Coiled versus Flow-Diverter-Treated Aneurysms: RNA Sequencing Analysis in a Rabbit Aneurysm Model.

Authors:  A Rouchaud; C Johnson; E Thielen; D Schroeder; Y-H Ding; D Dai; W Brinjikji; J Cebral; D F Kallmes; R Kadirvel
Journal:  AJNR Am J Neuroradiol       Date:  2015-12-31       Impact factor: 3.825

Review 5.  The role of oxidative stress in cerebral aneurysm formation and rupture.

Authors:  Robert M Starke; Nohra Chalouhi; Muhammad S Ali; Pascal M Jabbour; Stavropoula I Tjoumakaris; L Fernando Gonzalez; Robert H Rosenwasser; Walter J Koch; Aaron S Dumont
Journal:  Curr Neurovasc Res       Date:  2013-08       Impact factor: 1.990

6.  Gene expression profiling of blood in ruptured intracranial aneurysms: in search of biomarkers.

Authors:  Joanna Pera; Michal Korostynski; Slawomir Golda; Marcin Piechota; Jaroslaw Dzbek; Tadeusz Krzyszkowski; Tomasz Dziedzic; Marek Moskala; Ryszard Przewlocki; Andrzej Szczudlik; Agnieszka Slowik
Journal:  J Cereb Blood Flow Metab       Date:  2013-03-20       Impact factor: 6.200

7.  Analyzing illumina gene expression microarray data from different tissues: methodological aspects of data analysis in the metaxpress consortium.

Authors:  Claudia Schurmann; Katharina Heim; Arne Schillert; Stefan Blankenberg; Maren Carstensen; Marcus Dörr; Karlhans Endlich; Stephan B Felix; Christian Gieger; Harald Grallert; Christian Herder; Wolfgang Hoffmann; Georg Homuth; Thomas Illig; Jochen Kruppa; Thomas Meitinger; Christian Müller; Matthias Nauck; Annette Peters; Rainer Rettig; Michael Roden; Konstantin Strauch; Uwe Völker; Henry Völzke; Simone Wahl; Henri Wallaschofski; Philipp S Wild; Tanja Zeller; Alexander Teumer; Holger Prokisch; Andreas Ziegler
Journal:  PLoS One       Date:  2012-12-07       Impact factor: 3.240

8.  Whole Blood Gene Expression Profiles of Patients with a Past Aneurysmal Subarachnoid Hemorrhage.

Authors:  Femke N G van 't Hof; Ynte M Ruigrok; Jelena Medic; Bahram Sanjabi; Pieter van der Vlies; Gabriel J E Rinkel; Jan H Veldink
Journal:  PLoS One       Date:  2015-10-06       Impact factor: 3.240

Review 9.  Molecular basis and genetic predisposition to intracranial aneurysm.

Authors:  Gerard Tromp; Shantel Weinsheimer; Antti Ronkainen; Helena Kuivaniemi
Journal:  Ann Med       Date:  2014-08-12       Impact factor: 4.709

10.  MicroRNA-513b-5p targets COL1A1 and COL1A2 associated with the formation and rupture of intracranial aneurysm.

Authors:  Zheng Zheng; Yan Chen; Yinzhou Wang; Yongkun Li; Qiong Cheng
Journal:  Sci Rep       Date:  2021-07-21       Impact factor: 4.379

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