Literature DB >> 22078534

Targeting serpins in high-throughput and structure-based drug design.

Yi-Pin Chang1, Ravi Mahadeva, Anathe O M Patschull, Irene Nobeli, Ugo I Ekeowa, Adam R McKay, Konstantinos Thalassinos, James A Irving, Imran Haq, Mun Peak Nyon, John Christodoulou, Adriana Ordóñez, Elena Miranda, Bibek Gooptu.   

Abstract

Native, metastable serpins inherently tend to undergo stabilizing conformational transitions in mechanisms of health (e.g., enzyme inhibition) and disease (serpinopathies). This intrinsic tendency is modifiable by ligand binding, thus structure-based drug design is an attractive strategy in the serpinopathies. This can be viewed as a labor-intensive approach, and historically, its intellectual attractiveness has been tempered by relatively limited success in development of drugs reaching clinical practice. However, the increasing availability of a range of powerful experimental systems and higher-throughput techniques is causing academic and early-stage industrial pharmaceutical approaches to converge. In this review, we outline the different systems and techniques that are bridging the gap between what have traditionally been considered distinct disciplines. The individual methods are not serpin-specific. Indeed, many have only recently been applied to serpins, and thus investigators in other fields may have greater experience of their use to date. However, by presenting examples from our work and that of other investigators in the serpin field, we highlight how techniques with potential for automation and scaling can be combined to address a range of context-specific challenges in targeting the serpinopathies.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22078534     DOI: 10.1016/B978-0-12-385950-1.00008-0

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  3 in total

1.  In silico assessment of potential druggable pockets on the surface of α1-antitrypsin conformers.

Authors:  Anathe O M Patschull; Bibek Gooptu; Paul Ashford; Tina Daviter; Irene Nobeli
Journal:  PLoS One       Date:  2012-05-08       Impact factor: 3.240

2.  An integrative approach combining ion mobility mass spectrometry, X-ray crystallography, and nuclear magnetic resonance spectroscopy to study the conformational dynamics of α1 -antitrypsin upon ligand binding.

Authors:  Mun Peak Nyon; Tanya Prentice; Jemma Day; John Kirkpatrick; Ganesh N Sivalingam; Geraldine Levy; Imran Haq; James A Irving; David A Lomas; John Christodoulou; Bibek Gooptu; Konstantinos Thalassinos
Journal:  Protein Sci       Date:  2015-07-14       Impact factor: 6.725

Review 3.  The Multifaceted Effects of Alpha1-Antitrypsin on Neutrophil Functions.

Authors:  Sabina Janciauskiene; Sabine Wrenger; Stephan Immenschuh; Beata Olejnicka; Timm Greulich; Tobias Welte; Joanna Chorostowska-Wynimko
Journal:  Front Pharmacol       Date:  2018-04-17       Impact factor: 5.810

  3 in total

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