Literature DB >> 22077698

Evaluation of online miRNA resources for biomedical applications.

Neil H Tan Gana1, Ann F B Victoriano, Takashi Okamoto.   

Abstract

MicroRNAs (miRNAs) are endogenous single-stranded, 22-nt (nucleotide) RNAs which complement mRNA to initiate post-transcriptional regulation. This review presents updates and evaluations of the public domain resources available for miRNA identification and target prediction toward their utilization in the biomedical research approach. This study discusses the basic principles of miRNA computational studies based on the nature and mechanism of action of miRNAs. Furthermore, we have explored fifty-nine current online miRNA tools that can be categorized into three classes in this paper: (i) miRNA identification; (ii) miRNA target prediction; and (iii) specialized miRNA tools.
© 2011 The Authors. Journal compilation © 2011 by the Molecular Biology Society of Japan/Blackwell Publishing Ltd.

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Year:  2011        PMID： 22077698     DOI： 10.1111/j.1365-2443.2011.01564.x

Source DB:  PubMed          Journal:  Genes Cells        ISSN： 1356-9597            Impact factor:   1.891


  16 in total

1.  Systems analysis reveals down-regulation of a network of pro-survival miRNAs drives the apoptotic response in dilated cardiomyopathy.

Authors:  Ruth Isserlin; Daniele Merico; Dingyan Wang; Dajana Vuckovic; Nicolas Bousette; Anthony O Gramolini; Gary D Bader; Andrew Emili
Journal:  Mol Biosyst       Date:  2014-10-31

2.  MAPK and JAK/STAT pathways targeted by miR-23a and miR-23b in prostate cancer: computational and in vitro approaches.

Authors:  Seyed Hamid Aghaee-Bakhtiari; Ehsan Arefian; Mahmood Naderi; Farshid Noorbakhsh; Vahideh Nodouzi; Mojgan Asgari; Pezhman Fard-Esfahani; Reza Mahdian; Masoud Soleimani
Journal:  Tumour Biol       Date:  2015-01-22

3.  Differential expression profiling of microRNAs and their target genes during wheat-Bipolaris sorokiniana pathosystem.

Authors:  Pradeep Sharma; Om Prakash Gupta; Vikas Gupta; Gyanendra Singh; Gyanendra Pratap Singh
Journal:  Physiol Mol Biol Plants       Date:  2021-10-26

Review 4.  The evolving understanding of microRNA in bladder cancer.

Authors:  Elizabeth A Guancial; Joaquim Bellmunt; Shuyuan Yeh; Jonathan E Rosenberg; David M Berman
Journal:  Urol Oncol       Date:  2013-08-02       Impact factor: 3.498

Review 5.  MicroRNAs in cancer diagnosis and therapy: from bench to bedside.

Authors:  Isamu Hoshino; Hisahiro Matsubara
Journal:  Surg Today       Date:  2012-11-06       Impact factor: 2.549

6.  Interplay between the oxidoreductase PDIA6 and microRNA-322 controls the response to disrupted endoplasmic reticulum calcium homeostasis.

Authors:  Jody Groenendyk; Zhenling Peng; Elzbieta Dudek; Xiao Fan; Marcin J Mizianty; Estefanie Dufey; Hery Urra; Denisse Sepulveda; Diego Rojas-Rivera; Yunki Lim; Do Han Kim; Kayla Baretta; Sonal Srikanth; Yousang Gwack; Joohong Ahnn; Randal J Kaufman; Sun-Kyung Lee; Claudio Hetz; Lukasz Kurgan; Marek Michalak
Journal:  Sci Signal       Date:  2014-06-10       Impact factor: 8.192

7.  MicroRNAs in HIV-1 infection: an integration of viral and cellular interaction at the genomic level.

Authors:  Neil H Tan Gana; Tomohiro Onuki; Ann Florence B Victoriano; Takashi Okamoto
Journal:  Front Microbiol       Date:  2012-08-24       Impact factor: 5.640

8.  Off-target effect of endogenous siRNA derived from RMRP in human cells.

Authors:  Yoshiko Maida; Satoru Kyo; Timo Lassmann; Yoshihide Hayashizaki; Kenkichi Masutomi
Journal:  Int J Mol Sci       Date:  2013-04-29       Impact factor: 5.923

9.  CRISPRTarget: bioinformatic prediction and analysis of crRNA targets.

Authors:  Ambarish Biswas; Joshua N Gagnon; Stan J J Brouns; Peter C Fineran; Chris M Brown
Journal:  RNA Biol       Date:  2013-03-14       Impact factor: 4.652

10.  Network of microRNAs-mRNAs interactions in pancreatic cancer.

Authors:  Elnaz Naderi; Mehdi Mostafaei; Akram Pourshams; Ashraf Mohamadkhani
Journal:  Biomed Res Int       Date:  2014-05-07       Impact factor: 3.411
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