Literature DB >> 22075760

Molecular bases of thermophily in hyperthermophiles.

Tadayuki Imanaka1.   

Abstract

I reflect on some of our studies on the hyperthermophilic archaeon, Thermococcus kodakarensis KOD1 and its enzymes. The strain can grow at temperatures up to 100 °C, and also represents one of the simplest forms of life. As expected, all enzymes, DNA, RNA, cytoplasmic membrane, and cytoplasmic solute displayed remarkable thermostability, and we have determined some of the basic principles that govern this feature. To our delight, many of the enzymes exhibited unique biochemical properties and novel structures not found in mesophilic proteins. Here, I will focus on some enzymes whose three-dimensional structures are characteristic of thermostable enzymes. I will also add some examples on the stabilization of DNA, RNA, cytoplasmic membrane, and cytoplasmic solute.

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Year:  2011        PMID: 22075760      PMCID: PMC3309922          DOI: 10.2183/pjab.87.587

Source DB:  PubMed          Journal:  Proc Jpn Acad Ser B Phys Biol Sci        ISSN: 0386-2208            Impact factor:   3.493


  56 in total

1.  Methylguanine methyltransferase from Thermococcus kodakaraensis KOD1.

Authors:  M Takagi; Y Kai; T Imanaka
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

2.  Fructose 1,6-bisphosphate aldolase/phosphatase may be an ancestral gluconeogenic enzyme.

Authors:  Rafael F Say; Georg Fuchs
Journal:  Nature       Date:  2010-03-28       Impact factor: 49.962

Review 3.  Archaeal tetraether lipids: unique structures and applications.

Authors:  Michael J Hanford; Tonya L Peeples
Journal:  Appl Biochem Biotechnol       Date:  2002-01       Impact factor: 2.926

4.  Chemolithoautotrophic metabolism of anaerobic extremely thermophilic archaebacteria.

Authors:  F Fischer; W Zillig; K O Stetter; G Schreiber
Journal:  Nature       Date:  1983-02-10       Impact factor: 49.962

5.  Isolation and characterization of a second subunit of molecular chaperonin from Pyrococcus kodakaraensis KOD1: analysis of an ATPase-deficient mutant enzyme.

Authors:  M Izumi; S Fujiwara; M Takagi; S Kanaya; T Imanaka
Journal:  Appl Environ Microbiol       Date:  1999-04       Impact factor: 4.792

6.  Archaeal type III RuBisCOs function in a pathway for AMP metabolism.

Authors:  Takaaki Sato; Haruyuki Atomi; Tadayuki Imanaka
Journal:  Science       Date:  2007-02-16       Impact factor: 47.728

7.  Crystal structure of DNA polymerase from hyperthermophilic archaeon Pyrococcus kodakaraensis KOD1.

Authors:  H Hashimoto; M Nishioka; S Fujiwara; M Takagi; T Imanaka; T Inoue; Y Kai
Journal:  J Mol Biol       Date:  2001-02-23       Impact factor: 5.469

8.  Sequence analysis of glutamate dehydrogenase (GDH) from the hyperthermophilic archaeon Pyrococcus sp. KOD1 and comparison of the enzymatic characteristics of native and recombinant GDHs.

Authors:  R N Rahman; S Fujiwara; M Takagi; T Imanaka
Journal:  Mol Gen Genet       Date:  1998-02

9.  Thermococcus kodakarensis mutants deficient in di-myo-inositol phosphate use aspartate to cope with heat stress.

Authors:  Nuno Borges; Rie Matsumi; Tadayuki Imanaka; Haruyuki Atomi; Helena Santos
Journal:  J Bacteriol       Date:  2010-01       Impact factor: 3.490

10.  Crystal structure of a suicidal DNA repair protein: the Ada O6-methylguanine-DNA methyltransferase from E. coli.

Authors:  M H Moore; J M Gulbis; E J Dodson; B Demple; P C Moody
Journal:  EMBO J       Date:  1994-04-01       Impact factor: 11.598

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  8 in total

1.  Thermal Stability of a Mercuric Reductase from the Red Sea Atlantis II Hot Brine Environment as Analyzed by Site-Directed Mutagenesis.

Authors:  Mohamad Maged; Ahmed El Hosseiny; Mona Kamal Saadeldin; Ramy K Aziz; Eman Ramadan
Journal:  Appl Environ Microbiol       Date:  2019-01-23       Impact factor: 4.792

2.  An archaeal histone is required for transformation of Thermococcus kodakarensis.

Authors:  Lubomira Čuboňováa; Masahiro Katano; Tamotsu Kanai; Haruyuki Atomi; John N Reeve; Thomas J Santangelo
Journal:  J Bacteriol       Date:  2012-10-12       Impact factor: 3.490

3.  RNA at 92 °C: the non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi.

Authors:  Claire Toffano-Nioche; Alban Ott; Estelle Crozat; An N Nguyen; Matthias Zytnicki; Fabrice Leclerc; Patrick Forterre; Philippe Bouloc; Daniel Gautheret
Journal:  RNA Biol       Date:  2013-07-02       Impact factor: 4.652

4.  The Peculiar Glycolytic Pathway in Hyperthermophylic Archaea: Understanding Its Whims by Experimentation In Silico.

Authors:  Yanfei Zhang; Theresa Kouril; Jacky L Snoep; Bettina Siebers; Matteo Barberis; Hans V Westerhoff
Journal:  Int J Mol Sci       Date:  2017-04-20       Impact factor: 5.923

5.  Characterization and mutational analysis of a nicotinamide mononucleotide deamidase from Agrobacterium tumefaciens showing high thermal stability and catalytic efficiency.

Authors:  Ana Belén Martínez-Moñino; Rubén Zapata-Pérez; Antonio Ginés García-Saura; Fernando Gil-Ortiz; Manuela Pérez-Gilabert; Álvaro Sánchez-Ferrer
Journal:  PLoS One       Date:  2017-04-07       Impact factor: 3.240

6.  Misprediction of Structural Disorder in Halophiles.

Authors:  Rita Pancsa; Denes Kovacs; Peter Tompa
Journal:  Molecules       Date:  2019-01-29       Impact factor: 4.411

Review 7.  Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently.

Authors:  Andrew Currin; Neil Swainston; Philip J Day; Douglas B Kell
Journal:  Chem Soc Rev       Date:  2015-03-07       Impact factor: 54.564

Review 8.  Post-Translational Modifications Aid Archaeal Survival.

Authors:  Ping Gong; Ping Lei; Shengping Wang; Ao Zeng; Huiqiang Lou
Journal:  Biomolecules       Date:  2020-04-10
  8 in total

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