Literature DB >> 22073780

Monotonicity-constrained species distribution models.

Benjamin Hofner1, Jörg Müller, Torsten Hothorn.   

Abstract

Flexible modeling frameworks for species distribution models based on generalized additive models that allow for smooth, nonlinear effects and interactions are of increasing importance in ecology. Commonly, the flexibility of such smooth function estimates is controlled by means of penalized estimation procedures. However, the actual shape remains unspecified. In many applications, this is not desirable as researchers have a priori assumptions on the shape of the estimated effects, with monotonicity being the most important. Here we demonstrate how monotonicity constraints can be incorporated in a recently proposed flexible framework for species distribution models. Our proposal allows monotonicity constraints to be imposed on smooth effects and on ordinal, categorical variables using an additional asymmetric L2 penalty. Model estimation and variable selection for Red Kite (Milvus milvus) breeding was conducted using the flexible boosting framework implemented in R package mboost.

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Year:  2011        PMID: 22073780     DOI: 10.1890/10-2276.1

Source DB:  PubMed          Journal:  Ecology        ISSN: 0012-9658            Impact factor:   5.499


  5 in total

1.  Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics.

Authors:  Lea A I Vaas; Johannes Sikorski; Victoria Michael; Markus Göker; Hans-Peter Klenk
Journal:  PLoS One       Date:  2012-04-20       Impact factor: 3.240

2.  Large-scale model-based assessment of deer-vehicle collision risk.

Authors:  Torsten Hothorn; Roland Brandl; Jörg Müller
Journal:  PLoS One       Date:  2012-02-16       Impact factor: 3.240

3.  Controlling false discoveries in high-dimensional situations: boosting with stability selection.

Authors:  Benjamin Hofner; Luigi Boccuto; Markus Göker
Journal:  BMC Bioinformatics       Date:  2015-05-06       Impact factor: 3.169

Review 4.  An Update on Statistical Boosting in Biomedicine.

Authors:  Andreas Mayr; Benjamin Hofner; Elisabeth Waldmann; Tobias Hepp; Sebastian Meyer; Olaf Gefeller
Journal:  Comput Math Methods Med       Date:  2017-08-02       Impact factor: 2.238

5.  Optimizing the dynamics of protein expression.

Authors:  Jan-Hendrik Trösemeier; Sophia Rudorf; Holger Loessner; Benjamin Hofner; Andreas Reuter; Thomas Schulenborg; Ina Koch; Isabelle Bekeredjian-Ding; Reinhard Lipowsky; Christel Kamp
Journal:  Sci Rep       Date:  2019-05-17       Impact factor: 4.379

  5 in total

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