Literature DB >> 22068617

An Integrated Framework for Parameter-based Optimization of Scientific Workflows.

Vijay S Kumar, P Sadayappan, Gaurang Mehta, Karan Vahi, Ewa Deelman, Varun Ratnakar, Jihie Kim, Yolanda Gil, Mary Hall, Tahsin Kurc, Joel Saltz.   

Abstract

Data analysis processes in scientific applications can be expressed as coarse-grain workflows of complex data processing operations with data flow dependencies between them. Performance optimization of these workflows can be viewed as a search for a set of optimal values in a multi-dimensional parameter space. While some performance parameters such as grouping of workflow components and their mapping to machines do not a ect the accuracy of the output, others may dictate trading the output quality of individual components (and of the whole workflow) for performance. This paper describes an integrated framework which is capable of supporting performance optimizations along multiple dimensions of the parameter space. Using two real-world applications in the spatial data analysis domain, we present an experimental evaluation of the proposed framework.

Entities:  

Year:  2009        PMID: 22068617      PMCID: PMC3114421          DOI: 10.1145/1551609.1551638

Source DB:  PubMed          Journal:  Proc Int Symp High Perform Distrib Comput


  3 in total

1.  Taverna: a tool for the composition and enactment of bioinformatics workflows.

Authors:  Tom Oinn; Matthew Addis; Justin Ferris; Darren Marvin; Martin Senger; Mark Greenwood; Tim Carver; Kevin Glover; Matthew R Pocock; Anil Wipat; Peter Li
Journal:  Bioinformatics       Date:  2004-06-16       Impact factor: 6.937

2.  Automated microscopy system for mosaic acquisition and processing.

Authors:  S K Chow; H Hakozaki; D L Price; N A B MacLean; T J Deerinck; J C Bouwer; M E Martone; S T Peltier; M H Ellisman
Journal:  J Microsc       Date:  2006-05       Impact factor: 1.758

3.  Large-scale biomedical image analysis in grid environments.

Authors:  Vijay S Kumar; Benjamin Rutt; Tahsin Kurc; Umit V Catalyurek; Tony C Pan; Sunny Chow; Stephan Lamont; Maryann Martone; Joel H Saltz
Journal:  IEEE Trans Inf Technol Biomed       Date:  2008-03
  3 in total
  4 in total

1.  Region Templates: Data Representation and Management for High-Throughput Image Analysis.

Authors:  George Teodoro; Tony Pan; Tahsin Kurc; Jun Kong; Lee Cooper; Scott Klasky; Joel Saltz
Journal:  Parallel Comput       Date:  2014-12-01       Impact factor: 0.986

2.  High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms.

Authors:  George Teodoro; Tony Pan; Tahsin M Kurc; Jun Kong; Lee A D Cooper; Norbert Podhorszki; Scott Klasky; Joel H Saltz
Journal:  IPDPS       Date:  2013-05

3.  HPC AND GRID COMPUTING FOR INTEGRATIVE BIOMEDICAL RESEARCH.

Authors:  Tahsin Kurc; Shannon Hastings; Vijay Kumar; Stephen Langella; Ashish Sharma; Tony Pan; Scott Oster; David Ervin; Justin Permar; Sivaramakrishnan Narayanan; Yolanda Gil; Ewa Deelman; Mary Hall; Joel Saltz
Journal:  Int J High Perform Comput Appl       Date:  2009-08-01       Impact factor: 1.942

4.  Tackling Complexity in High Performance Computing Applications.

Authors:  J Darlington; A J Field; L Hakim
Journal:  Int J Parallel Program       Date:  2016-04-16       Impact factor: 1.382

  4 in total

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