Literature DB >> 22068507

Pigmentiphaga soli sp. nov., a bacterium isolated from soil.

Jae-Jin Lee1, Sathiyaraj Srinivasan, Myung Kyum Kim.   

Abstract

Strain BS12(T), a Gram-negative motile bacterium, was isolated from soil in South Korea and characterized to determine its taxonomic position. Phylogenetic analyses based on the 16S rRNA gene sequence revealed that the strain belonged to the family Alcaligenaceae in the class Betaproteobacteria. The highest degree of sequence similarities of strain BS12(T) were found with Pigmentiphaga litoralis JSM 061001(T) (98.3%), Pigmentiphaga daeguensis K110(T) (98.2%), and Pigmentiphaga kullae K24(T) (98.1%). Chemotaxonomic data revealed that strain BS12(T) possessed ubiquinone-8, which is common in the family Alcaligenaceae, and the predominant fatty acids were C(16:0), C(17:0) cyclo, summed feature 3 (C(16:1) ω6c/ω7c), and summed feature 8 (C(18:1) ω6c/ω7c). The major polar lipids of strain BS12(T) were phosphatidylethanolamine and phosphatidylglycerol. Based on these data, BS12(T) (=KCTC 23577(T) =JCM 17666(T) =KEMB 9004-082(T)) should be classified as a type strain of a novel species, for which the name Pigmentiphaga soli sp. nov. is proposed.

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Year:  2011        PMID: 22068507     DOI: 10.1007/s12275-011-1375-8

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  12 in total

1.  Pigmentiphaga litoralis sp. nov., a facultatively anaerobic bacterium isolated from a tidal flat sediment.

Authors:  Yi-Guang Chen; Yu-Qin Zhang; Ke Huang; Shu-Kun Tang; Yao Cao; Jin-Xiao Shi; Huai-Dong Xiao; Xiao-Long Cui; Wen-Jun Li
Journal:  Int J Syst Evol Microbiol       Date:  2009-03       Impact factor: 2.747

2.  16S ribosomal DNA amplification for phylogenetic study.

Authors:  W G Weisburg; S M Barns; D A Pelletier; D J Lane
Journal:  J Bacteriol       Date:  1991-01       Impact factor: 3.490

3.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

4.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

5.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

6.  Nonstaining (KOH) method for determination of gram reactions of marine bacteria.

Authors:  J D Buck
Journal:  Appl Environ Microbiol       Date:  1982-10       Impact factor: 4.792

Review 7.  Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication.

Authors:  M D Collins; D Jones
Journal:  Microbiol Rev       Date:  1981-06

8.  Sphingopyxis granuli sp. nov., a beta-glucosidase-producing bacterium in the family Sphingomonadaceae in alpha-4 subclass of the Proteobacteria.

Authors:  Myung Kyum Kim; Wan-Taek Im; Hiroyuki Ohta; Myungjin Lee; Sung-Taik Lee
Journal:  J Microbiol       Date:  2005-04       Impact factor: 3.422

9.  Pigmentiphaga daeguensis sp. nov., isolated from wastewater of a dye works, and emended description of the genus Pigmentiphaga.

Authors:  Jung-Hoon Yoon; So-Jung Kang; Wonyong Kim; Tae-Kwang Oh
Journal:  Int J Syst Evol Microbiol       Date:  2007-06       Impact factor: 2.747

10.  Parapusillimonas granuli gen. nov., sp. nov., isolated from granules from a wastewater-treatment bioreactor.

Authors:  Yeon-Ju Kim; Myung Kyum Kim; Wan-Taek Im; Sathiyaraj Srinivasan; Deok-Chun Yang
Journal:  Int J Syst Evol Microbiol       Date:  2009-08-11       Impact factor: 2.747

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2.  Draft Whole-Genome Sequences for Two Pigmentiphaga Isolates Recovered from Human Clinical Materials.

Authors:  Anne-Marie Bernier; Kathryn Bernard
Journal:  Genome Announc       Date:  2017-08-03

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Journal:  PLoS One       Date:  2019-04-12       Impact factor: 3.240

4.  Amphibian skin-associated Pigmentiphaga: Genome sequence and occurrence across geography and hosts.

Authors:  Molly C Bletz; Boyke Bunk; Cathrin Spröer; Peter Biwer; Silke Reiter; Falitiana C E Rabemananjara; Stefan Schulz; Jörg Overmann; Miguel Vences
Journal:  PLoS One       Date:  2019-10-11       Impact factor: 3.240

5.  Isolation and identification of sodium fluoroacetate degrading bacteria from caprine rumen in Brazil.

Authors:  Expedito K A Camboim; Arthur P Almeida; Michelle Z Tadra-Sfeir; Felício G Junior; Paulo P Andrade; Chris S McSweeney; Marcia A Melo; Franklin Riet-Correa
Journal:  ScientificWorldJournal       Date:  2012-07-31
  5 in total

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