Literature DB >> 22067158

Crowding of molecular motors determines microtubule depolymerization.

Louis Reese1, Anna Melbinger, Erwin Frey.   

Abstract

The assembly and disassembly dynamics of microtubules (MTs) is tightly controlled by MT-associated proteins. Here, we investigate how plus-end-directed depolymerases of the kinesin-8 family regulate MT depolymerization dynamics. Using an individual-based model, we reproduce experimental findings. Moreover, crowding is identified as the key regulatory mechanism of depolymerization dynamics. Our analysis reveals two qualitatively distinct regimes. For motor densities above a particular threshold, a macroscopic traffic jam emerges at the plus-end and the MT dynamics become independent of the motor concentration. Below this threshold, microscopic traffic jams at the tip arise that cancel out the effect of the depolymerization kinetics such that the depolymerization speed is solely determined by the motor density. Because this density changes over the MT length, length-dependent regulation is possible. Remarkably, motor cooperativity affects only the end-residence time of depolymerases and not the depolymerization speed.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22067158      PMCID: PMC3207156          DOI: 10.1016/j.bpj.2011.09.009

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  41 in total

1.  Random walks of cytoskeletal motors in open and closed compartments.

Authors:  R Lipowsky; S Klumpp; T M Nieuwenhuizen
Journal:  Phys Rev Lett       Date:  2001-08-17       Impact factor: 9.161

2.  Filament depolymerization by motor molecules.

Authors:  Gernot A Klein; Karsten Kruse; Gianaurelio Cuniberti; Frank Jülicher
Journal:  Phys Rev Lett       Date:  2005-03-15       Impact factor: 9.161

3.  The depolymerizing kinesin MCAK uses lattice diffusion to rapidly target microtubule ends.

Authors:  Jonne Helenius; Gary Brouhard; Yannis Kalaidzidis; Stefan Diez; Jonathon Howard
Journal:  Nature       Date:  2006-05-04       Impact factor: 49.962

4.  Bottleneck-induced transitions in a minimal model for intracellular transport.

Authors:  Paolo Pierobon; Mauro Mobilia; Roger Kouyos; Erwin Frey
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-09-13

Review 5.  Kinesin superfamily motor proteins and intracellular transport.

Authors:  Nobutaka Hirokawa; Yasuko Noda; Yosuke Tanaka; Shinsuke Niwa
Journal:  Nat Rev Mol Cell Biol       Date:  2009-10       Impact factor: 94.444

6.  A theory of microtubule catastrophes and their regulation.

Authors:  Ludovic Brun; Beat Rupp; Jonathan J Ward; François Nédélec
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-30       Impact factor: 11.205

Review 7.  The movement of kinesin along microtubules.

Authors:  J Howard
Journal:  Annu Rev Physiol       Date:  1996       Impact factor: 19.318

8.  Kinesin-8 from fission yeast: a heterodimeric, plus-end-directed motor that can couple microtubule depolymerization to cargo movement.

Authors:  Paula M Grissom; Thomas Fiedler; Ekaterina L Grishchuk; Daniela Nicastro; Robert R West; J Richard McIntosh
Journal:  Mol Biol Cell       Date:  2008-11-26       Impact factor: 4.138

9.  Force- and kinesin-8-dependent effects in the spatial regulation of fission yeast microtubule dynamics.

Authors:  Christian Tischer; Damian Brunner; Marileen Dogterom
Journal:  Mol Syst Biol       Date:  2009-03-17       Impact factor: 11.429

10.  Force- and length-dependent catastrophe activities explain interphase microtubule organization in fission yeast.

Authors:  Dietrich Foethke; Tatyana Makushok; Damian Brunner; François Nédélec
Journal:  Mol Syst Biol       Date:  2009-03-17       Impact factor: 11.429

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  14 in total

1.  Molecular crowding creates traffic jams of kinesin motors on microtubules.

Authors:  Cécile Leduc; Kathrin Padberg-Gehle; Vladimír Varga; Dirk Helbing; Stefan Diez; Jonathon Howard
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

2.  Motor Protein Accumulation on Antiparallel Microtubule Overlaps.

Authors:  Hui-Shun Kuan; Meredith D Betterton
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

3.  Molecular mechanisms for microtubule length regulation by kinesin-8 and XMAP215 proteins.

Authors:  Louis Reese; Anna Melbinger; Erwin Frey
Journal:  Interface Focus       Date:  2014-12-06       Impact factor: 3.906

4.  Feedback mechanism for microtubule length regulation by stathmin gradients.

Authors:  Maria Zeitz; Jan Kierfeld
Journal:  Biophys J       Date:  2014-12-16       Impact factor: 4.033

5.  Delayed feedback model of axonal length sensing.

Authors:  Bhargav R Karamched; Paul C Bressloff
Journal:  Biophys J       Date:  2015-05-05       Impact factor: 4.033

6.  Directionally biased sidestepping of Kip3/kinesin-8 is regulated by ATP waiting time and motor-microtubule interaction strength.

Authors:  Aniruddha Mitra; Felix Ruhnow; Salvatore Girardo; Stefan Diez
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-09       Impact factor: 11.205

7.  Microtubule length dependence of motor traffic in cells.

Authors:  Yunxin Zhang
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-11       Impact factor: 1.890

8.  Biophysics of filament length regulation by molecular motors.

Authors:  Hui-Shun Kuan; M D Betterton
Journal:  Phys Biol       Date:  2013-04-16       Impact factor: 2.583

9.  Phase-plane analysis of the totally asymmetric simple exclusion process with binding kinetics and switching between antiparallel lanes.

Authors:  Hui-Shun Kuan; Meredith D Betterton
Journal:  Phys Rev E       Date:  2016-08-29       Impact factor: 2.529

10.  Microtubule-associated proteins and motors required for ectopic microtubule array formation in Saccharomyces cerevisiae.

Authors:  Brianna R King; Janet B Meehl; Tamira Vojnar; Mark Winey; Eric G Muller; Trisha N Davis
Journal:  Genetics       Date:  2021-06-24       Impact factor: 4.562

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