| Literature DB >> 22065924 |
Donna S Mackay1, Arundhati Dev Borman, Phillip Moradi, Robert H Henderson, Zheng Li, Genevieve A Wright, Naushin Waseem, Mamatha Gandra, Dorothy A Thompson, Shomi S Bhattacharya, Graham E Holder, Andrew R Webster, Anthony T Moore.
Abstract
PURPOSE: To identify patients with autosomal recessive retinal dystrophy caused by mutations in the gene, retinal dehydrogenase 12 (RDH12), and to report the associated phenotype.Entities:
Mesh:
Substances:
Year: 2011 PMID: 22065924 PMCID: PMC3209419
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Primers and PCR conditions used in screening RDH12 in this cohort.
| Exon 1F | TTTCCCCACATTCTCTTTGCC | 54 | 517 |
| Exon 1R | TCCACCATGGTATCCACAACACC | | |
| Exon 2F | TAACGTATCTTAGTGTGAGCTCG | 54 | 306 |
| Exon 2R | TCCTTGAATTTCTAGTCAGAGC | | |
| Exon 3F | TCACTCTACCGTTGAAGGATGG | 54 | 405 |
| Exon 3R | TGTGGCAGAACCTGTCTAGTGG | | |
| Exon 4F | ATAGTTATTGAGTGCTGAGGC | 54 | 459 |
| Exon 4R | TAGACTGATCAGGAGAGGTAC | | |
| Exon 5F | TCAGACCAAACTGACCATTAGAG | 54 | 460 |
| Exon 5R | TGACACGTGCATGTTTGACAGCC | | |
| Exon 6F | TGGTACCTGCTGAATCCTGGG | 54 | 434 |
| Exon 6R | ACCTGGATTGCATCATCAGGC | | |
| Exon 7F | TTAGTTTCTTTGAGTCTGGC | 54 | 884 |
| Exon 7R | TGATTTGTTCCATTTCTCTCC |
Results of RDH12 mutational analysis.
| 1 | Asper | BC | No | Het | c.295C>A, p.L99I; c.883C>T, p.R295X | [ |
| 2 | Asper | GM | Yes | Hom | c.601T>C, p.C201R | [ |
| 3 | Asper | BC | No | Het | c.715C>T, p.R239W; c.806_810 del 5bp, p.A269AfsX1 | [ |
| 4 | Asper | BC | No | Het | c.700G>C, p.V233L; c.806_810 del 5bp,p.A269AfsX1 | Novel to this study [ |
| 5 | Asper | BC | No | Het | c.316 C>T, p.R106X; c.806_810 del 5bp,p.A269AfsX1 | Novel to this study [ |
| 6 | Asper | BC | No | Het | c.451C>G, p.H151D; c.806_810 del 5bp,p.A269AfsX1 | [ |
| 7 | Asper | BC | No | Hom | c.146C>A, p.T49K | Novel to this study |
| 8 | Asper | B | Yes | Hom | c.193C>T, p.R65X | [ |
| 9 | Asper | OC | No | Het | c.506G>A p. R169Q; c.57_60del, p.P20del | Novel to this study |
| 10 | Asper | OC | No | Het | c.209G>A, p.C70Y ; c.806_810del5bp,p.A269AfsX1 | Novel to this study [ |
| 11 | Asper | BC | No | Het | c.144 C>T, p.R62X; c.806_810del5bp, p.A269AfsX1 | [ |
| 12 | Affymetrix | KI | Yes | Hom | c.599A>G, p.Y200C | Novel to this study |
| 13 | Affymetrix | BC | Yes | Hom | c.454T>A, p.F152I | Novel to this study |
| 14 | Affymetrix/ phenotype | I | No | Het | c.250C>T, p.R84X; c.381_delA, p.G127GfsX1 | Novel to this study |
| 15 | Direct Seq | A | Yes | Hom | c.609C>A, p.S203R | Novel to this study |
| 16 | Direct Seq | P | Yes | Hom | c.506G>A, p.R169Q | Novel to this study |
| 17 | Direct Seq | BC | No | Het | c.505C>T, p.R169W; c.525C>T, p.S175L | Novel to this study [ |
| 18 | Direct seq | PD | No | Het | c.448+1g>a; c.698insGT, p.V233VfsX45 | Novel to this study |
| 19 | Phenotype | P | Yes | Hom | c.619A>G, p.N207D | Novel to this study |
| 20 | Phenotype | GM | Yes | Hom | c.601T>C, p.C201R | [ |
| 21 | Phenotype | P | Yes | Hom | c.506G>A, p.R169Q | Novel to this study |
| 22 | Phenotype | GM | Yes | Hom | c.601T>C, p.C201R | [ |
| 23 | Phenotype | GH | Unknown | Hom | c.146C>T, p.T49M | [ |
| 24 | Phenotype | SA | Yes | Hom | c.609C>A, p.S203R | Novel to this study |
| 25 | Phenotype | KI | No | Hom | c.379G>T, p.G127X | [ |
| 26 | Phenotype | GM | Yes | Hom | c.601T>C, p.C201R | [ |
| 27 | Phenotype | OC | No | Het | c.481C>T,p.R161W ; c.714insC, p.V238VfsX34 | Novel to this study |
| 28 | Phenotype | OC | Yes | Hom | c.609C>A p.S203R | Novel to this study |
| 29 | Phenotype | OC | No | Het | c.481C>T,p.R161W ; c.806_810del5bp, p.A269AfsX1 | Novel to this study [ |
Table showing the results of the mutational analysis in our cohort. Mutation type; Hom – homozygous mutation, Het – heterozygous mutation. Ethnic origin key - BC – British Caucasian, OC – Other Caucasian, GM – Gujurati muslim, GH - Gujurati Hindu, A – Afghanistan, P- Pakistani, I – Indian, B –Bangladeshi, KI-Kurdistani Iraqi, SA - Saudi Arabian DP - 1/2 Portuguese 1/2 Dominican Republic
Figure 1RDH12 gene structure showing the locations of the mutations identified in this study. Novel mutations are shown in red.
In silico analysis of identified RDH12 missense variants.
| | | |||||||
|---|---|---|---|---|---|---|---|---|
| Intolerant | 0 | PRD | 0.951 | 0.4152 | 1 | Neutral | ||
| Intolerant | 0.01 | POS | 0.888 | 0.6188 | 2 | Pathological | ||
| Intolerant | 0 | PRD | 0.998 | 0.9223 | 8 | Pathological | ||
| Intolerant | 0 | PRD | 0.991 | 0.1072 | 7 | Neutral | ||
| Intolerant | 0.01 | PRD | 0.992 | 0.3323 | 3 | Neutral | ||
| Intolerant | 0 | PRD | 0.968 | 0.2127 | 5 | Neutral | ||
| Tolerant | 0.38 | Benign | 0.018 | 0.513 | 0 | Pathological | ||
| Tolerant | 0.18 | POS | 0.798 | 0.7723 | 5 | Pathological | ||
| Intolerant | 0 | PRD | 0.997 | 0.5161 | 0 | Pathological | ||
| Intolerant | 0 | PRD | 0.999 | 0.8159 | 6 | Pathological | ||
| Intolerant | 0 | PRD | 0.997 | 0.2495 | 5 | Neutral | ||
| Intolerant | 0 | PRD | 0.998 | 0.5467 | 0 | Pathological | ||
| Tolerant | 0.1 | POS | 0.769 | 0.5209 | 0 | Pathological | ||
| Intolerant | 0 | PRD | 0.998 | 0.3381 | 3 | Neutral | ||
| Intolerant | 0.01 | PRD | 0.994 | 0.1661 | 6 | Neutral | ||
| Intolerant | 0.02 | PRD | 0.931 | 0.1899 | 6 | Neutral | ||
| p.R239W | 6 | Intolerant | 0 | PRD | 0.998 | 0.9122 | 8 | Pathological |
Changes highlighted by an asterisk are novel missense mutations identified in this study. SIFT results are reported to be tolerant if tolerance index ≥0.05 or intolerant if tolerance index <0.05. Polyphen-2 appraises mutations qualitatively as Benign, Possibly Damaging (POS) or Probably damaging (PRD) based on the model's false positive rate. pMUT is based on the use of different kinds of sequence information to label mutations, and neural networks to process this information NN=neural network values from 0 to 1. >0.5 is predicted as a disease associated mutation. Reliability=values 0–9. >5 is the best prediction.
Figure 2Phenotype associated with retinal dehydrogenase 12 (RDH12) retinopathy. A: Fundus appearance in adults and older children shows dense intraretinal pigment migration, severe retinal pigment epithelium atrophy, and arteriolar attenuation, with a severe atrophic pigmentary maculopathy (family 12, age 20 years). B: Para-arteriolar sparing of the intraretinal pigmentation was evident in six of 32 patients (white arrows, family 22, age 17.5 years). C: In children, retinal pigment epithelium atrophy with macular atrophy and minimal intraretinal pigmentation predominated (family 17, age 8.5 years). D: Macular atrophy was often associated with striking yellow deposits (family 3, age 27 years). E: No detectable macular autofluorescence was visible on fundus autofluorescence imaging, corresponding to the severe macular atrophy (family 11, age 11). F: Spectral domain optical coherence tomography demonstrated severe macular thinning, excavation, and distortion of the laminar architecture (white arrow, family 22, age 17.5 years).