| Literature DB >> 22065717 |
Jamila Nargis, Keng-Chong Wong, Melati Khairuddin, Suchada Chantrapromma, Hoong-Kun Fun.
Abstract
The title benzophenone compound, C(14)H(12)O(6)·H(2)O, was isolated from the bark of Garcinia hombroniana Pierre (Guttiferae). The mol-ecule is twisted, the dihedral angle between the two benzene rings being 59.13 (7)°. The meth-oxy group is approximately coplanar with the attached benzene ring, with a C-O-C-C torsion angle of 1.91 (18)°. The water mol-ecule is disordered over two positions in a 0.555 (19):0.445 (19) ratio. An intra-molecular O-H⋯O hydrogen bond generates an S(6) ring motif. The crystal structure is stabilized by inter-molecular O-H⋯O hydrogen bonds. These inter-actions link the mol-ecules into sheets parallel to the ac plane. The sheets are stacked along the b axis by π-π inter-actions, with centroid-centroid distances of 3.6219 (7) Å. A weak O-H⋯π inter-action was also noted.Entities:
Year: 2011 PMID: 22065717 PMCID: PMC3201278 DOI: 10.1107/S1600536811037913
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H12O6·H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point = 516–519 K |
| Mo | |
| Cell parameters from 4696 reflections | |
| θ = 1.9–32.5° | |
| α = 82.401 (1)° | µ = 0.12 mm−1 |
| β = 75.570 (1)° | |
| γ = 67.842 (1)° | Plate, yellow |
| 0.42 × 0.33 × 0.10 mm |
| Bruker APEXII CCD area-detector diffractometer | 4696 independent reflections |
| Radiation source: sealed tube | 4220 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.5°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 19157 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4696 reflections | (Δ/σ)max = 0.001 |
| 217 parameters | Δρmax = 0.51 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 120.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| O1 | 0.02024 (14) | 0.10822 (14) | 0.58801 (9) | 0.01558 (19) | |
| O2 | 0.18999 (14) | 0.13186 (13) | 0.36467 (9) | 0.01292 (18) | |
| H1O2 | 0.114 (4) | 0.106 (4) | 0.432 (3) | 0.044 (7)* | |
| O3 | 0.74976 (15) | 0.27372 (15) | 0.28766 (10) | 0.0168 (2) | |
| H1O3 | 0.757 (4) | 0.250 (3) | 0.215 (2) | 0.032 (6)* | |
| O4 | 0.40238 (14) | 0.24500 (14) | 0.69771 (9) | 0.01396 (19) | |
| O5 | −0.23219 (17) | 0.21024 (15) | 1.05072 (9) | 0.0191 (2) | |
| H1O5 | −0.247 (4) | 0.123 (3) | 1.035 (2) | 0.036 (7)* | |
| O6 | −0.12705 (15) | 0.70856 (13) | 0.85592 (10) | 0.01557 (19) | |
| H1O6 | −0.114 (4) | 0.751 (4) | 0.789 (3) | 0.040 (7)* | |
| C1 | 0.27991 (17) | 0.20544 (16) | 0.53565 (11) | 0.0104 (2) | |
| C2 | 0.31206 (17) | 0.17912 (16) | 0.40884 (11) | 0.0106 (2) | |
| C3 | 0.46478 (18) | 0.20447 (17) | 0.32314 (12) | 0.0125 (2) | |
| H3A | 0.4796 | 0.1921 | 0.2380 | 0.015* | |
| C4 | 0.59587 (18) | 0.24845 (17) | 0.36499 (12) | 0.0121 (2) | |
| C5 | 0.57783 (18) | 0.26523 (17) | 0.49021 (12) | 0.0128 (2) | |
| H5A | 0.6706 | 0.2921 | 0.5172 | 0.015* | |
| C6 | 0.42273 (17) | 0.24217 (16) | 0.57445 (11) | 0.0110 (2) | |
| C7 | 0.10655 (17) | 0.19008 (16) | 0.61790 (12) | 0.0110 (2) | |
| C8 | 0.01674 (17) | 0.28193 (16) | 0.73582 (11) | 0.0107 (2) | |
| C9 | −0.06148 (18) | 0.19737 (17) | 0.83798 (12) | 0.0126 (2) | |
| H9A | −0.0505 | 0.0816 | 0.8341 | 0.015* | |
| C10 | −0.15600 (19) | 0.28606 (17) | 0.94574 (12) | 0.0131 (2) | |
| C11 | −0.17726 (19) | 0.45713 (17) | 0.95104 (12) | 0.0137 (2) | |
| H11A | −0.2429 | 0.5169 | 1.0247 | 0.016* | |
| C12 | −0.10135 (18) | 0.53944 (16) | 0.84732 (12) | 0.0117 (2) | |
| C13 | −0.00183 (18) | 0.45267 (17) | 0.73944 (12) | 0.0120 (2) | |
| H13A | 0.0524 | 0.5089 | 0.6696 | 0.014* | |
| C14 | 0.54604 (19) | 0.27856 (19) | 0.73956 (13) | 0.0159 (2) | |
| H14A | 0.5188 | 0.2715 | 0.8297 | 0.024* | |
| H14B | 0.5450 | 0.3939 | 0.7101 | 0.024* | |
| H14C | 0.6725 | 0.1932 | 0.7076 | 0.024* | |
| O1W | 0.6637 (7) | 0.9646 (10) | 0.0189 (7) | 0.0211 (11) | 0.555 (19) |
| H1W1 | 0.7461 | 0.8666 | −0.0151 | 0.032* | 0.555 (19) |
| H2W1 | 0.5642 | 0.9957 | −0.0002 | 0.032* | 0.555 (19) |
| O1WX | 0.6960 (8) | 0.9169 (9) | 0.0518 (6) | 0.0125 (9) | 0.445 (19) |
| H1WX | 0.6896 | 0.8759 | 0.1225 | 0.019* | 0.445 (19) |
| H2WX | 0.7964 | 0.8353 | 0.0173 | 0.019* | 0.445 (19) |
| O1 | 0.0153 (4) | 0.0209 (5) | 0.0142 (4) | −0.0110 (4) | −0.0001 (3) | −0.0048 (4) |
| O2 | 0.0146 (4) | 0.0173 (4) | 0.0104 (4) | −0.0096 (4) | −0.0028 (3) | −0.0006 (3) |
| O3 | 0.0162 (4) | 0.0256 (5) | 0.0107 (4) | −0.0129 (4) | 0.0013 (3) | 0.0001 (4) |
| O4 | 0.0120 (4) | 0.0231 (5) | 0.0088 (4) | −0.0084 (4) | −0.0019 (3) | −0.0021 (3) |
| O5 | 0.0306 (6) | 0.0212 (5) | 0.0093 (4) | −0.0173 (4) | 0.0021 (4) | −0.0008 (4) |
| O6 | 0.0230 (5) | 0.0115 (4) | 0.0118 (4) | −0.0067 (4) | −0.0022 (4) | −0.0006 (3) |
| C1 | 0.0097 (5) | 0.0119 (5) | 0.0097 (5) | −0.0046 (4) | −0.0009 (4) | −0.0013 (4) |
| C2 | 0.0112 (5) | 0.0110 (5) | 0.0102 (5) | −0.0041 (4) | −0.0029 (4) | −0.0013 (4) |
| C3 | 0.0134 (5) | 0.0154 (5) | 0.0096 (5) | −0.0068 (4) | −0.0012 (4) | −0.0005 (4) |
| C4 | 0.0114 (5) | 0.0142 (5) | 0.0110 (5) | −0.0063 (4) | −0.0007 (4) | 0.0002 (4) |
| C5 | 0.0122 (5) | 0.0161 (5) | 0.0113 (5) | −0.0071 (4) | −0.0015 (4) | −0.0011 (4) |
| C6 | 0.0110 (5) | 0.0131 (5) | 0.0095 (5) | −0.0050 (4) | −0.0020 (4) | −0.0013 (4) |
| C7 | 0.0103 (5) | 0.0121 (5) | 0.0104 (5) | −0.0041 (4) | −0.0017 (4) | −0.0013 (4) |
| C8 | 0.0098 (5) | 0.0133 (5) | 0.0091 (5) | −0.0045 (4) | −0.0015 (4) | −0.0014 (4) |
| C9 | 0.0132 (5) | 0.0137 (5) | 0.0117 (5) | −0.0062 (4) | −0.0011 (4) | −0.0015 (4) |
| C10 | 0.0148 (5) | 0.0166 (6) | 0.0093 (5) | −0.0082 (5) | −0.0014 (4) | 0.0002 (4) |
| C11 | 0.0159 (5) | 0.0156 (6) | 0.0098 (5) | −0.0066 (5) | −0.0006 (4) | −0.0019 (4) |
| C12 | 0.0122 (5) | 0.0117 (5) | 0.0114 (5) | −0.0038 (4) | −0.0029 (4) | −0.0017 (4) |
| C13 | 0.0124 (5) | 0.0129 (5) | 0.0105 (5) | −0.0053 (4) | −0.0008 (4) | −0.0008 (4) |
| C14 | 0.0139 (5) | 0.0225 (6) | 0.0136 (6) | −0.0070 (5) | −0.0043 (4) | −0.0046 (5) |
| O1W | 0.0180 (11) | 0.0201 (19) | 0.026 (2) | −0.0063 (12) | −0.0030 (12) | −0.0079 (18) |
| O1WX | 0.0132 (13) | 0.0121 (16) | 0.0115 (15) | −0.0032 (12) | −0.0041 (10) | 0.0009 (12) |
| O1—C7 | 1.2437 (16) | C5—H5A | 0.9500 |
| O2—C2 | 1.3626 (15) | C7—C8 | 1.4972 (18) |
| O2—H1O2 | 0.89 (3) | C8—C13 | 1.3925 (18) |
| O3—C4 | 1.3546 (15) | C8—C9 | 1.3961 (17) |
| O3—H1O3 | 0.85 (3) | C9—C10 | 1.3937 (18) |
| O4—C6 | 1.3570 (15) | C9—H9A | 0.9500 |
| O4—C14 | 1.4344 (16) | C10—C11 | 1.3920 (19) |
| O5—C10 | 1.3715 (16) | C11—C12 | 1.3900 (18) |
| O5—H1O5 | 0.83 (3) | C11—H11A | 0.9500 |
| O6—C12 | 1.3724 (16) | C12—C13 | 1.3923 (17) |
| O6—H1O6 | 0.79 (3) | C13—H13A | 0.9500 |
| C1—C2 | 1.4168 (17) | C14—H14A | 0.9800 |
| C1—C6 | 1.4244 (17) | C14—H14B | 0.9800 |
| C1—C7 | 1.4628 (17) | C14—H14C | 0.9800 |
| C2—C3 | 1.3888 (17) | O1W—H1W1 | 0.8916 |
| C3—C4 | 1.3942 (18) | O1W—H2W1 | 0.7867 |
| C3—H3A | 0.9500 | O1WX—H1WX | 0.8209 |
| C4—C5 | 1.3998 (18) | O1WX—H2WX | 0.8602 |
| C5—C6 | 1.3876 (17) | ||
| C2—O2—H1O2 | 104.3 (18) | C13—C8—C9 | 121.23 (12) |
| C4—O3—H1O3 | 109.9 (16) | C13—C8—C7 | 120.11 (11) |
| C6—O4—C14 | 117.37 (10) | C9—C8—C7 | 118.45 (11) |
| C10—O5—H1O5 | 110.8 (18) | C10—C9—C8 | 118.71 (12) |
| C12—O6—H1O6 | 109 (2) | C10—C9—H9A | 120.6 |
| C2—C1—C6 | 116.96 (11) | C8—C9—H9A | 120.6 |
| C2—C1—C7 | 118.58 (11) | O5—C10—C11 | 116.99 (12) |
| C6—C1—C7 | 124.45 (11) | O5—C10—C9 | 122.05 (12) |
| O2—C2—C3 | 116.67 (11) | C11—C10—C9 | 120.96 (12) |
| O2—C2—C1 | 121.07 (11) | C12—C11—C10 | 119.21 (12) |
| C3—C2—C1 | 122.23 (11) | C12—C11—H11A | 120.4 |
| C2—C3—C4 | 118.45 (12) | C10—C11—H11A | 120.4 |
| C2—C3—H3A | 120.8 | O6—C12—C11 | 117.41 (11) |
| C4—C3—H3A | 120.8 | O6—C12—C13 | 121.52 (12) |
| O3—C4—C3 | 122.18 (12) | C11—C12—C13 | 121.06 (12) |
| O3—C4—C5 | 116.18 (11) | C12—C13—C8 | 118.81 (12) |
| C3—C4—C5 | 121.63 (12) | C12—C13—H13A | 120.6 |
| C6—C5—C4 | 119.19 (12) | C8—C13—H13A | 120.6 |
| C6—C5—H5A | 120.4 | O4—C14—H14A | 109.5 |
| C4—C5—H5A | 120.4 | O4—C14—H14B | 109.5 |
| O4—C6—C5 | 122.54 (11) | H14A—C14—H14B | 109.5 |
| O4—C6—C1 | 116.13 (11) | O4—C14—H14C | 109.5 |
| C5—C6—C1 | 121.26 (12) | H14A—C14—H14C | 109.5 |
| O1—C7—C1 | 120.63 (11) | H14B—C14—H14C | 109.5 |
| O1—C7—C8 | 117.04 (11) | H1W1—O1W—H2W1 | 112.7 |
| C1—C7—C8 | 122.17 (11) | H1WX—O1WX—H2WX | 97.6 |
| C6—C1—C2—O2 | 175.50 (11) | C6—C1—C7—O1 | −157.57 (13) |
| C7—C1—C2—O2 | −3.32 (18) | C2—C1—C7—C8 | −154.00 (12) |
| C6—C1—C2—C3 | −6.35 (19) | C6—C1—C7—C8 | 27.27 (19) |
| C7—C1—C2—C3 | 174.83 (12) | O1—C7—C8—C13 | −132.18 (13) |
| O2—C2—C3—C4 | −178.32 (11) | C1—C7—C8—C13 | 43.14 (18) |
| C1—C2—C3—C4 | 3.46 (19) | O1—C7—C8—C9 | 42.51 (17) |
| C2—C3—C4—O3 | 179.32 (12) | C1—C7—C8—C9 | −142.18 (13) |
| C2—C3—C4—C5 | 0.8 (2) | C13—C8—C9—C10 | −1.36 (19) |
| O3—C4—C5—C6 | 179.57 (12) | C7—C8—C9—C10 | −175.99 (11) |
| C3—C4—C5—C6 | −1.8 (2) | C8—C9—C10—O5 | −178.31 (12) |
| C14—O4—C6—C5 | 1.91 (18) | C8—C9—C10—C11 | 1.8 (2) |
| C14—O4—C6—C1 | 178.89 (11) | O5—C10—C11—C12 | 179.54 (12) |
| C4—C5—C6—O4 | 175.49 (12) | C9—C10—C11—C12 | −0.5 (2) |
| C4—C5—C6—C1 | −1.3 (2) | C10—C11—C12—O6 | 179.35 (12) |
| C2—C1—C6—O4 | −171.78 (11) | C10—C11—C12—C13 | −1.2 (2) |
| C7—C1—C6—O4 | 6.96 (19) | O6—C12—C13—C8 | −178.96 (12) |
| C2—C1—C6—C5 | 5.23 (19) | C11—C12—C13—C8 | 1.58 (19) |
| C7—C1—C6—C5 | −176.02 (12) | C9—C8—C13—C12 | −0.30 (19) |
| C2—C1—C7—O1 | 21.15 (19) | C7—C8—C13—C12 | 174.24 (11) |
| H··· | ||||
| O2—H1O2···O1 | 0.89 (3) | 1.72 (3) | 2.5453 (14) | 152 (3) |
| O2—H1O2···O1i | 0.89 (3) | 2.45 (3) | 2.9554 (16) | 117 (3) |
| O3—H1O3···O5ii | 0.85 (2) | 1.90 (2) | 2.7440 (15) | 177 (3) |
| O5—H1O5···O1Wiii | 0.83 (3) | 1.76 (3) | 2.574 (7) | 166 (3) |
| O6—H1O6···O2iv | 0.79 (3) | 1.98 (3) | 2.7220 (15) | 157 (3) |
| O1W—H1W1···O6ii | 0.89 | 1.91 | 2.746 (8) | 156 |
| C14—H14C···O1v | 0.98 | 2.55 | 3.4507 (19) | 152 |
| O1WX—H2WX···Cg2vi | 0.86 | 2.89 | 3.402 (7) | 120 |
Hydrogen-bond geometry (Å, °)
Cg2 is the centroid of the C8–C13 ring.
| H⋯ | ||||
|---|---|---|---|---|
| O2—H1 | 0.89 (3) | 1.72 (3) | 2.5453 (14) | 152 (3) |
| O2—H1 | 0.89 (3) | 2.45 (3) | 2.9554 (16) | 117 (3) |
| O3—H1 | 0.85 (2) | 1.90 (2) | 2.7440 (15) | 177 (3) |
| O5—H1 | 0.83 (3) | 1.76 (3) | 2.574 (7) | 166 (3) |
| O6—H1 | 0.79 (3) | 1.98 (3) | 2.7220 (15) | 157 (3) |
| O1 | 0.89 | 1.91 | 2.746 (8) | 156 |
| C14—H14 | 0.98 | 2.55 | 3.4507 (19) | 152 |
| O1 | 0.86 | 2.89 | 3.402 (7) | 120 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .