| Literature DB >> 22065714 |
Hamid Ennajih, Rachid Bouhfid, Stephane Massip, Jean Michel Leger, El Mokhtar Essassi.
Abstract
In the title compound, C(10)H(7)NO(2)S, the dihedral angle between the benzimidazole and malonaldehyde group is 1.41 (2)°. An intra-molecular hydrogen bond is formed between the NH group and one of the adjacent carbonyl O atoms. In addition, the NH group forms an inter-molecular hydrogen bond to a symmetry equivalent of this carbonyl O atom, connecting the mol-ecules into centrosymmetric dimers. The structure also contains C-H⋯O inter-molecular inter-actions.Entities:
Year: 2011 PMID: 22065714 PMCID: PMC3200844 DOI: 10.1107/S1600536811030248
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H7NO2S | |
| Monoclinic, | Cu |
| Hall symbol: -P 2ybc | Cell parameters from 1475 reflections |
| θ = 7.5–71.9° | |
| µ = 3.05 mm−1 | |
| β = 100.098 (8)° | Plate, colourless |
| 0.12 × 0.12 × 0.02 mm | |
| Rigaku R-AXIS RAPID diffractometer | 1569 independent reflections |
| Radiation source: micro-focus rotating anode | 1475 reflections with |
| confocal | |
| ω scans | θmax = 71.9°, θmin = 7.5° |
| Absorption correction: multi-scan ( | |
| 10660 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1569 reflections | (Δ/σ)max < 0.001 |
| 128 parameters | Δρmax = 0.60 e Å−3 |
| 0 restraints | Δρmin = −0.45 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.6870 (3) | 0.3667 (6) | 0.16032 (14) | 0.0291 (7) | |
| H1 | 0.6162 | 0.2210 | 0.1600 | 0.035* | |
| C2 | 0.7501 (3) | 0.4952 (7) | 0.21783 (13) | 0.0311 (7) | |
| H2 | 0.7216 | 0.4366 | 0.2578 | 0.037* | |
| C3 | 0.8986 (3) | 0.7993 (6) | 0.16137 (14) | 0.0272 (6) | |
| H3 | 0.9706 | 0.9434 | 0.1619 | 0.033* | |
| C4 | 0.8343 (3) | 0.6732 (6) | 0.10311 (13) | 0.0256 (6) | |
| C5 | 0.7315 (3) | 0.4596 (6) | 0.10291 (13) | 0.0255 (6) | |
| N6 | 0.6804 (3) | 0.3641 (5) | 0.03972 (11) | 0.0248 (6) | |
| H6 | 0.6145 | 0.2294 | 0.0313 | 0.030* | |
| C7 | 0.7391 (3) | 0.4926 (6) | −0.00706 (13) | 0.0248 (6) | |
| S8 | 0.86490 (8) | 0.74932 (13) | 0.02434 (3) | 0.0253 (3) | |
| C9 | 0.7044 (3) | 0.4279 (6) | −0.07455 (13) | 0.0267 (7) | |
| C10 | 0.6013 (3) | 0.2122 (6) | −0.09676 (14) | 0.0267 (7) | |
| H10 | 0.5856 | 0.1748 | −0.1423 | 0.032* | |
| O11 | 0.5306 (2) | 0.0694 (4) | −0.06329 (9) | 0.0303 (5) | |
| C12 | 0.8543 (4) | 0.7080 (6) | 0.21876 (14) | 0.0308 (7) | |
| H12 | 0.8955 | 0.7919 | 0.2592 | 0.037* | |
| C13 | 0.7714 (3) | 0.5777 (6) | −0.12103 (14) | 0.0303 (7) | |
| H13 | 0.7447 | 0.5248 | −0.1655 | 0.036* | |
| O14 | 0.8605 (3) | 0.7691 (4) | −0.10910 (11) | 0.0343 (6) |
| C1 | 0.0248 (13) | 0.0302 (18) | 0.0337 (14) | 0.0004 (12) | 0.0085 (11) | 0.0039 (12) |
| C2 | 0.0296 (14) | 0.037 (2) | 0.0280 (14) | 0.0031 (13) | 0.0094 (11) | 0.0059 (12) |
| C3 | 0.0231 (13) | 0.0296 (17) | 0.0300 (14) | 0.0009 (12) | 0.0079 (11) | −0.0012 (12) |
| C4 | 0.0205 (12) | 0.0312 (17) | 0.0266 (13) | 0.0034 (11) | 0.0087 (10) | 0.0026 (12) |
| C5 | 0.0197 (12) | 0.0278 (17) | 0.0294 (14) | 0.0042 (11) | 0.0052 (10) | −0.0001 (11) |
| N6 | 0.0200 (11) | 0.0268 (15) | 0.0287 (11) | −0.0004 (10) | 0.0071 (8) | −0.0004 (9) |
| C7 | 0.0176 (12) | 0.0264 (17) | 0.0318 (14) | 0.0032 (11) | 0.0084 (10) | 0.0007 (11) |
| S8 | 0.0225 (4) | 0.0277 (5) | 0.0274 (5) | −0.0021 (2) | 0.0090 (3) | 0.0003 (2) |
| C9 | 0.0213 (13) | 0.0307 (18) | 0.0295 (14) | 0.0040 (11) | 0.0082 (10) | 0.0010 (11) |
| C10 | 0.0218 (13) | 0.0316 (18) | 0.0277 (14) | 0.0040 (11) | 0.0070 (11) | 0.0002 (11) |
| O11 | 0.0262 (10) | 0.0315 (13) | 0.0341 (10) | −0.0017 (8) | 0.0083 (8) | 0.0019 (9) |
| C12 | 0.0295 (15) | 0.0367 (19) | 0.0263 (14) | 0.0045 (12) | 0.0053 (11) | −0.0022 (12) |
| C13 | 0.0276 (14) | 0.0352 (19) | 0.0303 (14) | 0.0030 (13) | 0.0109 (11) | 0.0003 (12) |
| O14 | 0.0333 (12) | 0.0377 (15) | 0.0353 (12) | −0.0053 (9) | 0.0151 (9) | 0.0016 (9) |
| C1—C2 | 1.382 (4) | N6—C7 | 1.334 (4) |
| C1—C5 | 1.392 (4) | N6—H6 | 0.8800 |
| C1—H1 | 0.9500 | C7—C9 | 1.418 (4) |
| C2—C12 | 1.391 (4) | C7—S8 | 1.735 (3) |
| C2—H2 | 0.9500 | C9—C13 | 1.421 (4) |
| C3—C12 | 1.388 (4) | C9—C10 | 1.425 (4) |
| C3—C4 | 1.391 (4) | C10—O11 | 1.228 (4) |
| C3—H3 | 0.9500 | C10—H10 | 0.9500 |
| C4—C5 | 1.388 (4) | C12—H12 | 0.9500 |
| C4—S8 | 1.741 (3) | C13—O14 | 1.228 (4) |
| C5—N6 | 1.393 (3) | C13—H13 | 0.9500 |
| C2—C1—C5 | 117.2 (3) | C5—N6—H6 | 122.6 |
| C2—C1—H1 | 121.4 | N6—C7—C9 | 124.4 (3) |
| C5—C1—H1 | 121.4 | N6—C7—S8 | 112.0 (2) |
| C1—C2—C12 | 121.8 (3) | C9—C7—S8 | 123.5 (2) |
| C1—C2—H2 | 119.1 | C7—S8—C4 | 90.23 (13) |
| C12—C2—H2 | 119.1 | C7—C9—C13 | 120.5 (3) |
| C12—C3—C4 | 117.9 (3) | C7—C9—C10 | 120.4 (3) |
| C12—C3—H3 | 121.0 | C13—C9—C10 | 119.1 (3) |
| C4—C3—H3 | 121.0 | O11—C10—C9 | 126.9 (3) |
| C5—C4—C3 | 120.7 (3) | O11—C10—H10 | 116.5 |
| C5—C4—S8 | 111.4 (2) | C9—C10—H10 | 116.5 |
| C3—C4—S8 | 127.8 (2) | C3—C12—C2 | 120.8 (3) |
| C4—C5—C1 | 121.6 (3) | C3—C12—H12 | 119.6 |
| C4—C5—N6 | 111.4 (2) | C2—C12—H12 | 119.6 |
| C1—C5—N6 | 126.9 (3) | O14—C13—C9 | 126.2 (3) |
| C7—N6—C5 | 114.9 (2) | O14—C13—H13 | 116.9 |
| C7—N6—H6 | 122.6 | C9—C13—H13 | 116.9 |
| C5—C1—C2—C12 | −0.2 (4) | C9—C7—S8—C4 | −179.5 (2) |
| C12—C3—C4—C5 | −1.2 (4) | C5—C4—S8—C7 | 0.0 (2) |
| C12—C3—C4—S8 | 178.5 (2) | C3—C4—S8—C7 | −179.7 (3) |
| C3—C4—C5—C1 | 1.1 (4) | N6—C7—C9—C13 | 179.4 (2) |
| S8—C4—C5—C1 | −178.7 (2) | S8—C7—C9—C13 | −1.0 (4) |
| C3—C4—C5—N6 | 179.7 (3) | N6—C7—C9—C10 | −0.3 (4) |
| S8—C4—C5—N6 | −0.1 (3) | S8—C7—C9—C10 | 179.3 (2) |
| C2—C1—C5—C4 | −0.3 (4) | C7—C9—C10—O11 | 2.1 (4) |
| C2—C1—C5—N6 | −178.7 (3) | C13—C9—C10—O11 | −177.7 (3) |
| C4—C5—N6—C7 | 0.2 (3) | C4—C3—C12—C2 | 0.7 (4) |
| C1—C5—N6—C7 | 178.7 (3) | C1—C2—C12—C3 | 0.0 (5) |
| C5—N6—C7—C9 | 179.4 (2) | C7—C9—C13—O14 | −0.4 (5) |
| C5—N6—C7—S8 | −0.2 (3) | C10—C9—C13—O14 | 179.3 (3) |
| N6—C7—S8—C4 | 0.1 (2) |
| H··· | ||||
| N6—H6···O11 | 0.88 | 2.13 | 2.731 (3) | 125. |
| N6—H6···O11i | 0.88 | 2.13 | 2.926 (3) | 151. |
| C3—H3···O14ii | 0.95 | 2.43 | 3.297 (4) | 152. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N6—H6⋯O11 | 0.88 | 2.13 | 2.731 (3) | 125 |
| N6—H6⋯O11i | 0.88 | 2.13 | 2.926 (3) | 151 |
| C3—H3⋯O14ii | 0.95 | 2.43 | 3.297 (4) | 152 |
Symmetry codes: (i) ; (ii) .