Literature DB >> 22065651

[(2R,3S,6S)-3-Acet-yloxy-6-(1-phenyl-1H-1,2,3-triazol-4-yl)-3,6-dihydro-2H-pyran-2-yl]methyl acetate.

Julio Zukerman-Schpector, Hélio A Stefani, Nathalia C S Silva, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(18)H(19)N(3)O(5), the 3,6-dihydro-2H-pyran ring adopts a half-chair, distorted towards a half-boat, conformation with Q(T) = 0.5276(14) Å. The benzene ring is twisted out of the place of the triazole ring [dihedral angle = 23.54 (8)°]. In the crystal, supra-molecular layers in the ac plane are formed through C-H⋯O and C-H⋯π(triazole) inter-actions. These stack along the b axis being connected by C-H⋯N contacts.

Entities:  

Year:  2011        PMID: 22065651      PMCID: PMC3201326          DOI: 10.1107/S1600536811037305

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemical attributes of C-glycosides, see: Ritchie et al. (2002 ▶); Hanessian & Lou (2000 ▶); Hultin (2005 ▶); Zou (2005 ▶). For chiral properties of C-glycosides, see: Nakata (2005 ▶); Nicolaou et al. (2008 ▶); Somsak (2001 ▶). For additional conformation analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C18H19N3O5 M = 357.36 Monoclinic, a = 4.79932 (7) Å b = 16.6308 (2) Å c = 10.76331 (14) Å β = 93.225 (1)° V = 857.73 (2) Å3 Z = 2 Cu Kα radiation μ = 0.86 mm−1 T = 100 K 0.20 × 0.10 × 0.05 mm

Data collection

Agilent SuperNova Dual Cu at zero diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.848, T max = 0.959 5784 measured reflections 3369 independent reflections 3304 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.084 S = 1.04 3369 reflections 237 parameters 1 restraint H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.19 e Å−3 Absolute structure: Flack (1983 ▶), 1591 Friedel pairs Flack parameter: −0.09 (15) Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶), DIAMOND (Brandenburg, 2006 ▶) and MarvinSketch (ChemAxon, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811037305/hg5093sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037305/hg5093Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811037305/hg5093Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H19N3O5F(000) = 376
Mr = 357.36Dx = 1.384 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54184 Å
Hall symbol: P 2ybCell parameters from 4088 reflections
a = 4.79932 (7) Åθ = 2.7–74.0°
b = 16.6308 (2) ŵ = 0.86 mm1
c = 10.76331 (14) ÅT = 100 K
β = 93.225 (1)°Prism, colourless
V = 857.73 (2) Å30.20 × 0.10 × 0.05 mm
Z = 2
Agilent SuperNova Dual Cu at zero diffractometer with an Atlas detector3369 independent reflections
Radiation source: fine-focus sealed tube3304 reflections with I > 2σ(I)
graphiteRint = 0.019
Detector resolution: 10.4041 pixels mm-1θmax = 74.2°, θmin = 4.1°
ω scansh = −5→5
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −20→20
Tmin = 0.848, Tmax = 0.959l = −13→8
5784 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.084w = 1/[σ2(Fo2) + (0.0525P)2 + 0.1259P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
3369 reflectionsΔρmax = 0.14 e Å3
237 parametersΔρmin = −0.19 e Å3
1 restraintAbsolute structure: Flack (1983), 1591 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.09 (15)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.1199 (2)0.49978 (6)0.39298 (9)0.0183 (2)
O20.1131 (3)0.41952 (8)0.69075 (13)0.0374 (3)
O30.0424 (2)0.54932 (7)0.63709 (10)0.0230 (2)
O40.0156 (3)0.75452 (8)0.58495 (11)0.0298 (3)
O50.1489 (2)0.70479 (7)0.40355 (11)0.0226 (2)
N10.2553 (3)0.37406 (8)0.10112 (11)0.0163 (2)
N20.2724 (3)0.44506 (8)0.03950 (12)0.0205 (3)
N30.1016 (3)0.49499 (8)0.09098 (12)0.0202 (3)
C10.4329 (3)0.30870 (9)0.07023 (15)0.0174 (3)
C20.5395 (4)0.30667 (10)−0.04686 (15)0.0231 (3)
H20.48550.3461−0.10740.028*
C30.7260 (4)0.24640 (11)−0.07433 (16)0.0274 (3)
H30.80350.2451−0.15360.033*
C40.7999 (4)0.18788 (10)0.01356 (17)0.0265 (3)
H40.92750.1466−0.00560.032*
C50.6871 (4)0.18983 (10)0.12911 (17)0.0278 (4)
H50.73620.14940.18880.033*
C60.5023 (3)0.25052 (10)0.15854 (15)0.0232 (3)
H60.42510.25200.23790.028*
C70.0740 (3)0.37932 (9)0.19199 (13)0.0177 (3)
H70.02510.33850.24850.021*
C8−0.0244 (3)0.45681 (9)0.18467 (13)0.0160 (3)
C9−0.2265 (3)0.49831 (9)0.26498 (13)0.0176 (3)
H9−0.40200.46580.26140.021*
C10−0.3016 (3)0.58149 (9)0.21885 (15)0.0192 (3)
H10−0.40120.58740.14060.023*
C11−0.2323 (3)0.64660 (9)0.28465 (14)0.0200 (3)
H11−0.29260.69770.25430.024*
C12−0.0613 (3)0.64194 (9)0.40561 (14)0.0193 (3)
H12−0.18210.64980.47740.023*
C130.0863 (3)0.56087 (9)0.41504 (14)0.0181 (3)
H130.22380.55770.34880.022*
C140.2357 (3)0.54349 (10)0.53946 (14)0.0225 (3)
H14A0.31700.48880.53880.027*
H14B0.38960.58250.55500.027*
C15−0.0055 (3)0.48239 (10)0.70412 (15)0.0247 (3)
C16−0.2217 (4)0.49774 (14)0.79520 (16)0.0342 (4)
H16A−0.16500.47250.87490.051*
H16B−0.40030.47500.76360.051*
H16C−0.24220.55580.80700.051*
C170.1610 (3)0.75859 (9)0.49755 (14)0.0201 (3)
C180.3763 (4)0.82174 (10)0.47939 (18)0.0270 (4)
H18A0.31020.87340.51000.041*
H18B0.40960.82630.39070.041*
H18C0.55050.80690.52560.041*
U11U22U33U12U13U23
O10.0217 (5)0.0174 (5)0.0160 (5)−0.0037 (4)0.0037 (4)−0.0012 (4)
O20.0421 (8)0.0277 (7)0.0423 (8)−0.0015 (6)0.0020 (6)0.0073 (6)
O30.0284 (6)0.0250 (6)0.0162 (5)−0.0015 (5)0.0055 (4)−0.0001 (4)
O40.0357 (7)0.0314 (7)0.0232 (6)−0.0047 (5)0.0090 (5)−0.0096 (5)
O50.0253 (6)0.0199 (5)0.0236 (6)−0.0061 (4)0.0104 (5)−0.0069 (4)
N10.0186 (6)0.0138 (6)0.0165 (6)−0.0001 (5)0.0014 (5)0.0012 (5)
N20.0269 (7)0.0157 (6)0.0193 (6)0.0015 (5)0.0053 (5)0.0025 (5)
N30.0234 (6)0.0184 (6)0.0194 (6)0.0005 (5)0.0055 (5)0.0002 (5)
C10.0170 (7)0.0150 (6)0.0203 (7)−0.0005 (6)0.0013 (5)−0.0042 (6)
C20.0259 (8)0.0236 (7)0.0201 (8)0.0013 (6)0.0037 (6)−0.0024 (6)
C30.0283 (8)0.0291 (9)0.0253 (8)0.0004 (7)0.0064 (6)−0.0080 (7)
C40.0239 (8)0.0201 (8)0.0355 (9)0.0033 (6)0.0016 (7)−0.0088 (7)
C50.0312 (9)0.0201 (8)0.0319 (9)0.0042 (7)−0.0014 (7)0.0011 (7)
C60.0266 (8)0.0203 (7)0.0228 (7)0.0027 (7)0.0027 (6)0.0007 (6)
C70.0182 (7)0.0176 (7)0.0174 (7)−0.0019 (6)0.0029 (5)0.0005 (6)
C80.0162 (7)0.0162 (7)0.0156 (7)−0.0027 (5)0.0010 (5)−0.0019 (5)
C90.0172 (7)0.0180 (7)0.0177 (7)−0.0022 (6)0.0025 (5)−0.0017 (6)
C100.0161 (7)0.0209 (8)0.0210 (7)0.0008 (5)0.0033 (5)0.0009 (6)
C110.0189 (7)0.0186 (7)0.0233 (8)0.0015 (6)0.0074 (6)0.0012 (6)
C120.0195 (7)0.0173 (7)0.0219 (8)−0.0037 (6)0.0078 (6)−0.0030 (6)
C130.0180 (7)0.0190 (7)0.0178 (7)−0.0037 (6)0.0057 (5)−0.0021 (5)
C140.0210 (7)0.0280 (8)0.0188 (7)−0.0011 (6)0.0045 (6)−0.0012 (6)
C150.0238 (8)0.0304 (9)0.0195 (7)−0.0080 (7)−0.0032 (6)0.0028 (6)
C160.0289 (9)0.0513 (12)0.0226 (8)−0.0084 (9)0.0036 (7)0.0073 (8)
C170.0205 (7)0.0174 (7)0.0221 (7)0.0028 (6)−0.0005 (6)−0.0031 (6)
C180.0266 (8)0.0196 (8)0.0349 (9)−0.0029 (6)0.0016 (7)−0.0030 (6)
O1—C131.4289 (17)C7—C81.373 (2)
O1—C91.4425 (17)C7—H70.9500
O2—C151.203 (2)C8—C91.503 (2)
O3—C151.353 (2)C9—C101.507 (2)
O3—C141.4435 (18)C9—H91.0000
O4—C171.204 (2)C10—C111.326 (2)
O5—C171.3494 (19)C10—H100.9500
O5—C121.4537 (18)C11—C121.501 (2)
N1—C71.3482 (19)C11—H110.9500
N1—N21.3591 (18)C12—C131.524 (2)
N1—C11.4320 (19)C12—H121.0000
N2—N31.3113 (19)C13—C141.511 (2)
N3—C81.3617 (19)C13—H131.0000
C1—C61.384 (2)C14—H14A0.9900
C1—C21.387 (2)C14—H14B0.9900
C2—C31.387 (2)C15—C161.489 (2)
C2—H20.9500C16—H16A0.9800
C3—C41.389 (3)C16—H16B0.9800
C3—H30.9500C16—H16C0.9800
C4—C51.384 (3)C17—C181.494 (2)
C4—H40.9500C18—H18A0.9800
C5—C61.392 (2)C18—H18B0.9800
C5—H50.9500C18—H18C0.9800
C6—H60.9500
C13—O1—C9112.08 (11)C9—C10—H10119.1
C15—O3—C14117.93 (13)C10—C11—C12121.97 (14)
C17—O5—C12117.77 (12)C10—C11—H11119.0
C7—N1—N2110.90 (12)C12—C11—H11119.0
C7—N1—C1129.40 (13)O5—C12—C11107.19 (12)
N2—N1—C1119.55 (12)O5—C12—C13108.46 (12)
N3—N2—N1106.72 (12)C11—C12—C13109.44 (12)
N2—N3—C8109.38 (13)O5—C12—H12110.6
C6—C1—C2121.36 (14)C11—C12—H12110.6
C6—C1—N1119.64 (14)C13—C12—H12110.6
C2—C1—N1118.96 (14)O1—C13—C14107.51 (12)
C3—C2—C1119.13 (15)O1—C13—C12107.63 (12)
C3—C2—H2120.4C14—C13—C12115.09 (13)
C1—C2—H2120.4O1—C13—H13108.8
C2—C3—C4120.28 (15)C14—C13—H13108.8
C2—C3—H3119.9C12—C13—H13108.8
C4—C3—H3119.9O3—C14—C13109.89 (12)
C5—C4—C3119.84 (15)O3—C14—H14A109.7
C5—C4—H4120.1C13—C14—H14A109.7
C3—C4—H4120.1O3—C14—H14B109.7
C4—C5—C6120.51 (16)C13—C14—H14B109.7
C4—C5—H5119.7H14A—C14—H14B108.2
C6—C5—H5119.7O2—C15—O3123.73 (16)
C1—C6—C5118.85 (15)O2—C15—C16125.44 (17)
C1—C6—H6120.6O3—C15—C16110.83 (16)
C5—C6—H6120.6C15—C16—H16A109.5
N1—C7—C8104.66 (13)C15—C16—H16B109.5
N1—C7—H7127.7H16A—C16—H16B109.5
C8—C7—H7127.7C15—C16—H16C109.5
N3—C8—C7108.34 (13)H16A—C16—H16C109.5
N3—C8—C9122.66 (13)H16B—C16—H16C109.5
C7—C8—C9128.96 (14)O4—C17—O5123.09 (14)
O1—C9—C8110.58 (12)O4—C17—C18125.26 (14)
O1—C9—C10111.38 (12)O5—C17—C18111.64 (14)
C8—C9—C10112.47 (12)C17—C18—H18A109.5
O1—C9—H9107.4C17—C18—H18B109.5
C8—C9—H9107.4H18A—C18—H18B109.5
C10—C9—H9107.4C17—C18—H18C109.5
C11—C10—C9121.71 (14)H18A—C18—H18C109.5
C11—C10—H10119.1H18B—C18—H18C109.5
C7—N1—N2—N3−0.21 (17)C7—C8—C9—O160.2 (2)
C1—N1—N2—N3−176.19 (13)N3—C8—C9—C107.9 (2)
N1—N2—N3—C8−0.02 (16)C7—C8—C9—C10−174.61 (14)
C7—N1—C1—C6−21.1 (2)O1—C9—C10—C119.9 (2)
N2—N1—C1—C6154.08 (15)C8—C9—C10—C11−114.87 (16)
C7—N1—C1—C2161.09 (15)C9—C10—C11—C123.5 (2)
N2—N1—C1—C2−23.8 (2)C17—O5—C12—C11124.32 (14)
C6—C1—C2—C3−2.0 (2)C17—O5—C12—C13−117.60 (14)
N1—C1—C2—C3175.82 (14)C10—C11—C12—O5135.30 (15)
C1—C2—C3—C41.4 (2)C10—C11—C12—C1317.9 (2)
C2—C3—C4—C5−0.1 (3)C9—O1—C13—C14−165.40 (12)
C3—C4—C5—C6−0.7 (3)C9—O1—C13—C1270.07 (14)
C2—C1—C6—C51.2 (2)O5—C12—C13—O1−169.07 (11)
N1—C1—C6—C5−176.58 (15)C11—C12—C13—O1−52.44 (15)
C4—C5—C6—C10.2 (3)O5—C12—C13—C1471.10 (15)
N2—N1—C7—C80.34 (16)C11—C12—C13—C14−172.27 (13)
C1—N1—C7—C8175.81 (14)C15—O3—C14—C13117.54 (15)
N2—N3—C8—C70.23 (17)O1—C13—C14—O3−63.44 (16)
N2—N3—C8—C9178.14 (13)C12—C13—C14—O356.45 (17)
N1—C7—C8—N3−0.34 (16)C14—O3—C15—O23.6 (2)
N1—C7—C8—C9−178.08 (14)C14—O3—C15—C16−176.58 (13)
C13—O1—C9—C878.46 (14)C12—O5—C17—O43.6 (2)
C13—O1—C9—C10−47.37 (15)C12—O5—C17—C18−177.05 (14)
N3—C8—C9—O1−117.28 (15)
D—H···AD—HH···AD···AD—H···A
C7—H7···O4i0.952.293.2207 (19)167
C9—H9···Cg1ii1.002.683.5362 (16)144
C16—H16a···N3iii0.982.623.463 (2)145
C16—H16b···O2ii0.982.593.570 (2)177
C18—H18a···O1iv0.982.543.516 (2)174
C18—H18c···O4v0.982.453.400 (2)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯O4i0.952.293.2207 (19)167
C9—H9⋯Cg1ii1.002.683.5362 (16)144
C16—H16a⋯N3iii0.982.623.463 (2)145
C16—H16b⋯O2ii0.982.593.570 (2)177
C18—H18a⋯O1iv0.982.543.516 (2)174
C18—H18c⋯O4v0.982.453.400 (2)164

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  8 in total

Review 1.  Carbanionic reactivity of the anomeric center in carbohydrates.

Authors:  L Somsák
Journal:  Chem Rev       Date:  2001-01       Impact factor: 60.622

2.  Stereocontrolled glycosyl transfer reactions with unprotected glycosyl donors.

Authors:  S Hanessian; B Lou
Journal:  Chem Rev       Date:  2000-12-13       Impact factor: 60.622

Review 3.  Glycosylation and the complement system.

Authors:  Gayle E Ritchie; Beryl E Moffatt; Robert B Sim; B Paul Morgan; Raymond A Dwek; Pauline M Rudd
Journal:  Chem Rev       Date:  2002-02       Impact factor: 60.622

Review 4.  Total synthesis of marine polycyclic ethers.

Authors:  Tadashi Nakata
Journal:  Chem Rev       Date:  2005-12       Impact factor: 60.622

5.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 6.  The continuing saga of the marine polyether biotoxins.

Authors:  K C Nicolaou; Michael O Frederick; Robert J Aversa
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

Review 7.  Bioactive C-glycosides from bacterial secondary metabolism.

Authors:  Philip G Hultin
Journal:  Curr Top Med Chem       Date:  2005       Impact factor: 3.295

Review 8.  C-glycosides and aza-C-glycosides as potential glycosidase and glycosyltransferase inhibitors.

Authors:  Wei Zou
Journal:  Curr Top Med Chem       Date:  2005       Impact factor: 3.295

  8 in total

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