| Literature DB >> 22065507 |
Sampath Natarajan1, Rita Mathews.
Abstract
In the title salt, C(12)H(14)ClN(4) (+)·C(10)H(10)NO(3) (-), zwitterionic N-H⋯O inter-actions form an R(2) (2)(8) ring. The crystal structure is stabilized by N-H⋯O and N-H⋯N hydrogen bonds involving two different eight-membered rings. An N-H⋯O inter-action occurs between the pyrimidine ring (donor) and carboxyl-ate group (acceptor) while the other ring is formed by N-H⋯N inter-actions, which form a dimer between two symmetry-related salts. An intra-molecular N-H⋯O hydrogen bond forms a six-membered ring in the benzoate. Inter-molecular C-H⋯O inter-actions are also observed.Entities:
Year: 2011 PMID: 22065507 PMCID: PMC3201463 DOI: 10.1107/S1600536811035501
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H14ClN4+·C10H10NO3− | |
| Monoclinic, | Mo |
| Cell parameters from 17933 reflections | |
| θ = 1.9–28.0° | |
| µ = 0.20 mm−1 | |
| β = 99.071 (3)° | |
| Block, colorless | |
| 0.50 × 0.45 × 0.42 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 2719 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 28.0°, θmin = 1.9° |
| ω scans | |
| 17933 measured reflections | |
| 5077 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5077 reflections | (Δ/σ)max = 0.002 |
| 281 parameters | Δρmax = 0.29 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.62790 (7) | −0.12826 (18) | 0.25493 (7) | 0.1465 (7) | |
| O1 | 0.25218 (12) | 0.3854 (3) | 0.05381 (12) | 0.0926 (9) | |
| O2 | 0.25430 (14) | 0.2607 (4) | 0.13892 (13) | 0.1067 (11) | |
| O3 | 0.37717 (11) | 0.3960 (3) | 0.33389 (11) | 0.0809 (7) | |
| N1 | 0.43891 (11) | 0.3633 (3) | −0.01402 (11) | 0.0567 (7) | |
| N2 | 0.34901 (13) | 0.3749 (3) | −0.08192 (12) | 0.0708 (8) | |
| H2A | 0.3626 | 0.4469 | −0.0994 | 0.085* | |
| H2B | 0.3130 | 0.3430 | −0.0953 | 0.085* | |
| N3 | 0.36043 (12) | 0.2008 (3) | −0.00894 (12) | 0.0640 (7) | |
| H3 | 0.3237 | 0.1738 | −0.0228 | 0.077* | |
| N4 | 0.52835 (12) | 0.3481 (3) | 0.05255 (12) | 0.0654 (7) | |
| H4A | 0.5399 | 0.4220 | 0.0348 | 0.078* | |
| H4B | 0.5525 | 0.3093 | 0.0825 | 0.078* | |
| N5 | 0.32811 (13) | 0.3417 (3) | 0.23743 (12) | 0.0763 (9) | |
| H5 | 0.2990 | 0.2900 | 0.2188 | 0.092* | |
| C2 | 0.38321 (14) | 0.3137 (3) | −0.03469 (14) | 0.0567 (8) | |
| C4 | 0.39373 (15) | 0.1283 (4) | 0.03825 (14) | 0.0620 (9) | |
| C5 | 0.45211 (14) | 0.1711 (3) | 0.06071 (13) | 0.0562 (8) | |
| C6 | 0.47322 (14) | 0.2937 (3) | 0.03366 (13) | 0.0544 (8) | |
| C7 | 0.49398 (15) | 0.0933 (4) | 0.10941 (14) | 0.0590 (8) | |
| C8 | 0.51370 (18) | −0.0416 (4) | 0.09988 (16) | 0.0780 (10) | |
| H8 | 0.4995 | −0.0873 | 0.0627 | 0.094* | |
| C9 | 0.5542 (2) | −0.1100 (4) | 0.1447 (2) | 0.0925 (13) | |
| H9 | 0.5666 | −0.2014 | 0.1378 | 0.111* | |
| C10 | 0.57609 (18) | −0.0431 (5) | 0.19934 (18) | 0.0828 (11) | |
| C11 | 0.55717 (17) | 0.0894 (5) | 0.21009 (16) | 0.0770 (11) | |
| H11 | 0.5722 | 0.1341 | 0.2473 | 0.092* | |
| C12 | 0.51563 (16) | 0.1586 (4) | 0.16609 (15) | 0.0676 (9) | |
| H12 | 0.5021 | 0.2484 | 0.1742 | 0.081* | |
| C13 | 0.36238 (19) | 0.0048 (4) | 0.06172 (18) | 0.0857 (12) | |
| H13A | 0.3875 | −0.0302 | 0.0990 | 0.103* | |
| H13B | 0.3238 | 0.0360 | 0.0729 | 0.103* | |
| C14 | 0.3503 (3) | −0.1118 (5) | 0.0168 (3) | 0.1222 (18) | |
| H14A | 0.3300 | −0.1870 | 0.0348 | 0.183* | |
| H14B | 0.3883 | −0.1455 | 0.0064 | 0.183* | |
| H14C | 0.3247 | −0.0788 | −0.0200 | 0.183* | |
| C15 | 0.33329 (14) | 0.4293 (4) | 0.13458 (15) | 0.0596 (8) | |
| C16 | 0.36330 (15) | 0.5078 (4) | 0.09550 (16) | 0.0663 (9) | |
| H16 | 0.3467 | 0.5132 | 0.0537 | 0.080* | |
| C17 | 0.41712 (16) | 0.5788 (4) | 0.11626 (18) | 0.0754 (10) | |
| H17 | 0.4364 | 0.6313 | 0.0891 | 0.090* | |
| C18 | 0.44141 (17) | 0.5700 (4) | 0.17795 (19) | 0.0833 (11) | |
| H18 | 0.4777 | 0.6169 | 0.1927 | 0.100* | |
| C19 | 0.41304 (16) | 0.4932 (4) | 0.21807 (18) | 0.0774 (10) | |
| H19 | 0.4303 | 0.4888 | 0.2597 | 0.093* | |
| C20 | 0.35892 (15) | 0.4216 (4) | 0.19784 (15) | 0.0620 (8) | |
| C21 | 0.27569 (16) | 0.3551 (4) | 0.10749 (16) | 0.0687 (9) | |
| C22 | 0.33649 (17) | 0.3327 (4) | 0.29967 (16) | 0.0758 (10) | |
| C23 | 0.2921 (2) | 0.2325 (7) | 0.3252 (2) | 0.1161 (17) | |
| H23A | 0.2583 | 0.2126 | 0.2924 | 0.139* | |
| H23B | 0.3131 | 0.1442 | 0.3363 | 0.139* | |
| C24 | 0.2684 (5) | 0.2828 (11) | 0.3771 (4) | 0.247 (6) | |
| H24A | 0.2412 | 0.2139 | 0.3898 | 0.371* | |
| H24B | 0.2465 | 0.3689 | 0.3665 | 0.371* | |
| H24C | 0.3014 | 0.2999 | 0.4104 | 0.371* |
| Cl1 | 0.1356 (12) | 0.1739 (14) | 0.1179 (10) | 0.0501 (10) | −0.0176 (8) | 0.0603 (10) |
| O1 | 0.0793 (17) | 0.122 (2) | 0.0646 (15) | −0.0330 (16) | −0.0247 (13) | 0.0108 (15) |
| O2 | 0.097 (2) | 0.132 (3) | 0.0758 (17) | −0.0575 (19) | −0.0334 (15) | 0.0152 (17) |
| O3 | 0.0685 (15) | 0.104 (2) | 0.0626 (14) | 0.0039 (14) | −0.0119 (12) | −0.0153 (14) |
| N1 | 0.0503 (14) | 0.0625 (16) | 0.0522 (14) | −0.0062 (13) | −0.0077 (11) | 0.0027 (12) |
| N2 | 0.0611 (16) | 0.0756 (19) | 0.0667 (17) | −0.0151 (15) | −0.0177 (14) | 0.0160 (15) |
| N3 | 0.0519 (15) | 0.0730 (19) | 0.0613 (16) | −0.0176 (14) | −0.0093 (12) | 0.0036 (14) |
| N4 | 0.0542 (15) | 0.0687 (18) | 0.0675 (17) | −0.0089 (14) | −0.0082 (13) | 0.0185 (14) |
| N5 | 0.0629 (17) | 0.100 (2) | 0.0574 (17) | −0.0223 (17) | −0.0183 (14) | −0.0015 (16) |
| C2 | 0.0562 (19) | 0.0574 (19) | 0.0522 (17) | −0.0120 (16) | −0.0045 (15) | −0.0012 (15) |
| C4 | 0.062 (2) | 0.067 (2) | 0.0534 (18) | −0.0103 (17) | −0.0020 (15) | 0.0032 (16) |
| C5 | 0.0576 (18) | 0.061 (2) | 0.0484 (16) | −0.0032 (16) | 0.0024 (14) | 0.0017 (14) |
| C6 | 0.0513 (17) | 0.060 (2) | 0.0494 (17) | −0.0062 (16) | 0.0014 (14) | −0.0001 (14) |
| C7 | 0.0579 (18) | 0.065 (2) | 0.0528 (18) | −0.0041 (16) | 0.0051 (15) | 0.0059 (15) |
| C8 | 0.098 (3) | 0.072 (3) | 0.061 (2) | 0.006 (2) | 0.005 (2) | 0.0003 (18) |
| C9 | 0.116 (4) | 0.078 (3) | 0.085 (3) | 0.033 (3) | 0.020 (3) | 0.019 (2) |
| C10 | 0.075 (2) | 0.104 (3) | 0.068 (2) | 0.014 (2) | 0.005 (2) | 0.026 (2) |
| C11 | 0.072 (2) | 0.099 (3) | 0.055 (2) | −0.005 (2) | −0.0049 (18) | 0.009 (2) |
| C12 | 0.069 (2) | 0.073 (2) | 0.058 (2) | 0.0008 (18) | 0.0028 (17) | 0.0016 (17) |
| C13 | 0.081 (3) | 0.089 (3) | 0.080 (2) | −0.021 (2) | −0.009 (2) | 0.016 (2) |
| C14 | 0.132 (4) | 0.085 (3) | 0.139 (4) | −0.026 (3) | −0.013 (4) | 0.007 (3) |
| C15 | 0.0490 (17) | 0.063 (2) | 0.0607 (19) | 0.0016 (16) | −0.0089 (15) | −0.0106 (16) |
| C16 | 0.061 (2) | 0.076 (2) | 0.0568 (18) | −0.0003 (18) | −0.0051 (16) | −0.0004 (17) |
| C17 | 0.055 (2) | 0.084 (3) | 0.084 (3) | −0.0058 (19) | 0.0027 (18) | 0.006 (2) |
| C18 | 0.061 (2) | 0.090 (3) | 0.091 (3) | −0.017 (2) | −0.013 (2) | 0.002 (2) |
| C19 | 0.065 (2) | 0.086 (3) | 0.071 (2) | −0.012 (2) | −0.0202 (18) | 0.000 (2) |
| C20 | 0.0519 (18) | 0.066 (2) | 0.0625 (19) | −0.0002 (17) | −0.0091 (15) | −0.0040 (17) |
| C21 | 0.062 (2) | 0.078 (2) | 0.060 (2) | −0.0134 (19) | −0.0081 (17) | −0.0059 (19) |
| C22 | 0.065 (2) | 0.095 (3) | 0.061 (2) | 0.008 (2) | −0.0099 (18) | −0.005 (2) |
| C23 | 0.100 (3) | 0.174 (5) | 0.073 (3) | −0.012 (3) | 0.009 (2) | 0.015 (3) |
| C24 | 0.312 (13) | 0.252 (10) | 0.206 (9) | −0.147 (10) | 0.126 (9) | −0.044 (8) |
| Cl1—C10 | 1.734 (4) | C10—C11 | 1.357 (6) |
| O1—C21 | 1.240 (4) | C11—C12 | 1.387 (5) |
| O2—C21 | 1.265 (4) | C11—H11 | 0.9300 |
| O3—C22 | 1.232 (4) | C12—H12 | 0.9300 |
| N1—C2 | 1.331 (4) | C13—C14 | 1.475 (6) |
| N1—C6 | 1.360 (4) | C13—H13A | 0.9700 |
| N2—C2 | 1.315 (4) | C13—H13B | 0.9700 |
| N2—H2A | 0.8600 | C14—H14A | 0.9600 |
| N2—H2B | 0.8600 | C14—H14B | 0.9600 |
| N3—C2 | 1.345 (4) | C14—H14C | 0.9600 |
| N3—C4 | 1.356 (4) | C15—C16 | 1.380 (5) |
| N3—H3 | 0.8600 | C15—C20 | 1.410 (4) |
| N4—C6 | 1.330 (4) | C15—C21 | 1.495 (5) |
| N4—H4A | 0.8600 | C16—C17 | 1.382 (5) |
| N4—H4B | 0.8600 | C16—H16 | 0.9300 |
| N5—C22 | 1.346 (4) | C17—C18 | 1.372 (5) |
| N5—C20 | 1.405 (4) | C17—H17 | 0.9300 |
| N5—H5 | 0.8600 | C18—C19 | 1.366 (5) |
| C4—C5 | 1.370 (4) | C18—H18 | 0.9300 |
| C4—C13 | 1.494 (5) | C19—C20 | 1.388 (5) |
| C5—C6 | 1.417 (4) | C19—H19 | 0.9300 |
| C5—C7 | 1.492 (4) | C22—C23 | 1.534 (6) |
| C7—C8 | 1.379 (5) | C23—C24 | 1.406 (9) |
| C7—C12 | 1.400 (4) | C23—H23A | 0.9700 |
| C8—C9 | 1.381 (5) | C23—H23B | 0.9700 |
| C8—H8 | 0.9300 | C24—H24A | 0.9600 |
| C9—C10 | 1.372 (6) | C24—H24B | 0.9600 |
| C9—H9 | 0.9300 | C24—H24C | 0.9600 |
| C2—N1—C6 | 117.6 (3) | C14—C13—H13B | 108.8 |
| C2—N2—H2A | 120.0 | C4—C13—H13B | 108.8 |
| C2—N2—H2B | 120.0 | H13A—C13—H13B | 107.7 |
| H2A—N2—H2B | 120.0 | C13—C14—H14A | 109.5 |
| C2—N3—C4 | 121.8 (3) | C13—C14—H14B | 109.5 |
| C2—N3—H3 | 119.1 | H14A—C14—H14B | 109.5 |
| C4—N3—H3 | 119.1 | C13—C14—H14C | 109.5 |
| C6—N4—H4A | 120.0 | H14A—C14—H14C | 109.5 |
| C6—N4—H4B | 120.0 | H14B—C14—H14C | 109.5 |
| H4A—N4—H4B | 120.0 | C16—C15—C20 | 118.4 (3) |
| C22—N5—C20 | 130.8 (3) | C16—C15—C21 | 118.3 (3) |
| C22—N5—H5 | 114.6 | C20—C15—C21 | 123.4 (3) |
| C20—N5—H5 | 114.6 | C15—C16—C17 | 122.3 (3) |
| N2—C2—N1 | 119.9 (3) | C15—C16—H16 | 118.8 |
| N2—C2—N3 | 118.2 (3) | C17—C16—H16 | 118.8 |
| N1—C2—N3 | 121.9 (3) | C18—C17—C16 | 118.5 (4) |
| N3—C4—C5 | 119.4 (3) | C18—C17—H17 | 120.8 |
| N3—C4—C13 | 115.6 (3) | C16—C17—H17 | 120.8 |
| C5—C4—C13 | 125.0 (3) | C19—C18—C17 | 120.9 (3) |
| C4—C5—C6 | 116.6 (3) | C19—C18—H18 | 119.5 |
| C4—C5—C7 | 123.6 (3) | C17—C18—H18 | 119.5 |
| C6—C5—C7 | 119.7 (3) | C18—C19—C20 | 121.2 (3) |
| N4—C6—N1 | 115.1 (3) | C18—C19—H19 | 119.4 |
| N4—C6—C5 | 122.4 (3) | C20—C19—H19 | 119.4 |
| N1—C6—C5 | 122.5 (3) | C19—C20—N5 | 123.1 (3) |
| C8—C7—C12 | 118.2 (3) | C19—C20—C15 | 118.7 (3) |
| C8—C7—C5 | 121.9 (3) | N5—C20—C15 | 118.1 (3) |
| C12—C7—C5 | 119.9 (3) | O1—C21—O2 | 122.7 (3) |
| C7—C8—C9 | 121.0 (4) | O1—C21—C15 | 118.0 (3) |
| C7—C8—H8 | 119.5 | O2—C21—C15 | 119.2 (3) |
| C9—C8—H8 | 119.5 | O3—C22—N5 | 123.6 (4) |
| C10—C9—C8 | 120.0 (4) | O3—C22—C23 | 122.0 (3) |
| C10—C9—H9 | 120.0 | N5—C22—C23 | 114.4 (3) |
| C8—C9—H9 | 120.0 | C24—C23—C22 | 115.1 (6) |
| C11—C10—C9 | 120.2 (4) | C24—C23—H23A | 108.5 |
| C11—C10—Cl1 | 120.0 (3) | C22—C23—H23A | 108.5 |
| C9—C10—Cl1 | 119.9 (4) | C24—C23—H23B | 108.5 |
| C10—C11—C12 | 120.5 (4) | C22—C23—H23B | 108.5 |
| C10—C11—H11 | 119.7 | H23A—C23—H23B | 107.5 |
| C12—C11—H11 | 119.7 | C23—C24—H24A | 109.5 |
| C11—C12—C7 | 120.0 (4) | C23—C24—H24B | 109.5 |
| C11—C12—H12 | 120.0 | H24A—C24—H24B | 109.5 |
| C7—C12—H12 | 120.0 | C23—C24—H24C | 109.5 |
| C14—C13—C4 | 114.0 (4) | H24A—C24—H24C | 109.5 |
| C14—C13—H13A | 108.8 | H24B—C24—H24C | 109.5 |
| C4—C13—H13A | 108.8 | ||
| C6—N1—C2—N2 | −178.0 (3) | C10—C11—C12—C7 | −1.6 (5) |
| C6—N1—C2—N3 | 1.5 (5) | C8—C7—C12—C11 | 1.9 (5) |
| C4—N3—C2—N2 | 177.3 (3) | C5—C7—C12—C11 | −176.4 (3) |
| C4—N3—C2—N1 | −2.2 (5) | N3—C4—C13—C14 | 67.1 (5) |
| C2—N3—C4—C5 | 0.3 (5) | C5—C4—C13—C14 | −112.8 (4) |
| C2—N3—C4—C13 | −179.6 (3) | C20—C15—C16—C17 | −0.1 (5) |
| N3—C4—C5—C6 | 2.0 (5) | C21—C15—C16—C17 | −179.3 (3) |
| C13—C4—C5—C6 | −178.1 (3) | C15—C16—C17—C18 | 0.2 (6) |
| N3—C4—C5—C7 | −175.7 (3) | C16—C17—C18—C19 | −0.2 (6) |
| C13—C4—C5—C7 | 4.2 (5) | C17—C18—C19—C20 | 0.1 (6) |
| C2—N1—C6—N4 | −179.8 (3) | C18—C19—C20—N5 | −179.8 (3) |
| C2—N1—C6—C5 | 1.0 (4) | C18—C19—C20—C15 | 0.0 (6) |
| C4—C5—C6—N4 | 178.1 (3) | C22—N5—C20—C19 | 10.9 (6) |
| C7—C5—C6—N4 | −4.1 (5) | C22—N5—C20—C15 | −168.9 (4) |
| C4—C5—C6—N1 | −2.7 (5) | C16—C15—C20—C19 | 0.0 (5) |
| C7—C5—C6—N1 | 175.0 (3) | C21—C15—C20—C19 | 179.2 (3) |
| C4—C5—C7—C8 | 63.2 (5) | C16—C15—C20—N5 | 179.9 (3) |
| C6—C5—C7—C8 | −114.4 (4) | C21—C15—C20—N5 | −1.0 (5) |
| C4—C5—C7—C12 | −118.5 (4) | C16—C15—C21—O1 | −11.5 (5) |
| C6—C5—C7—C12 | 63.9 (4) | C20—C15—C21—O1 | 169.3 (3) |
| C12—C7—C8—C9 | −0.7 (5) | C16—C15—C21—O2 | 165.7 (3) |
| C5—C7—C8—C9 | 177.6 (3) | C20—C15—C21—O2 | −13.5 (5) |
| C7—C8—C9—C10 | −0.9 (6) | C20—N5—C22—O3 | −2.3 (6) |
| C8—C9—C10—C11 | 1.3 (6) | C20—N5—C22—C23 | 179.6 (4) |
| C8—C9—C10—Cl1 | −178.9 (3) | O3—C22—C23—C24 | 44.3 (8) |
| C9—C10—C11—C12 | −0.1 (6) | N5—C22—C23—C24 | −137.5 (7) |
| Cl1—C10—C11—C12 | −179.8 (3) |
| H··· | ||||
| N5—H5···O2 | 0.86 | 1.89 | 2.605 (4) | 140 |
| N2—H2A···O3i | 0.86 | 2.15 | 2.977 (4) | 163 |
| N4—H4A···N1ii | 0.86 | 2.16 | 2.988 (4) | 163 |
| N3—H3···O1iii | 0.86 | 1.80 | 2.660 (4) | 178 |
| C14—H14C···O1iii | 0.96 | 2.53 | 3.323 (6) | 140 |
| N2—H2B···O2iii | 0.86 | 1.91 | 2.746 (4) | 164 |
| N4—H4B···O3iv | 0.86 | 2.35 | 3.017 (3) | 134 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N5—H5⋯O2 | 0.86 | 1.89 | 2.605 (4) | 140 |
| N2—H2 | 0.86 | 2.15 | 2.977 (4) | 163 |
| N4—H4 | 0.86 | 2.16 | 2.988 (4) | 163 |
| N3—H3⋯O1iii | 0.86 | 1.80 | 2.660 (4) | 178 |
| C14—H14 | 0.96 | 2.53 | 3.323 (6) | 140 |
| N2—H2 | 0.86 | 1.91 | 2.746 (4) | 164 |
| N4—H4 | 0.86 | 2.35 | 3.017 (3) | 134 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .