Literature DB >> 22065505

(2R)-2-(1,3-Dioxoisoindolin-2-yl)-3-methyl-butanoic acid.

Abdul Rauf Raza, Aisha Saddiqa, M Nawaz Tahir, Sadia Saddiq.   

Abstract

In the title compound, C(13)H(13)NO(4), the dihedral angle between the nine-membered phthalimino ring system and the carb-oxy-lic acid group is 67.15 (9)°. An intra-molecular C-H⋯O close contact, which forms an S(6) ring, may help to establish the mol-ecular conformation. In the crystal, mol-ecules are linked by O-H⋯O hydrogen bonds, thereby forming C(7) chains propagating in [010].

Entities:  

Year:  2011        PMID: 22065505      PMCID: PMC3200837          DOI: 10.1107/S1600536811033393

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Barooah et al. (2006 ▶); Raza et al. (2009 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H13NO4 M = 247.24 Monoclinic, a = 8.9120 (7) Å b = 6.3410 (4) Å c = 11.8471 (10) Å β = 109.980 (4)° V = 629.20 (8) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.34 × 0.26 × 0.24 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.968, T max = 0.978 5969 measured reflections 1635 independent reflections 1267 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.100 S = 1.05 1635 reflections 166 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811033393/hb6372sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033393/hb6372Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811033393/hb6372Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13NO4F(000) = 260
Mr = 247.24Dx = 1.305 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1267 reflections
a = 8.9120 (7) Åθ = 2.5–27.9°
b = 6.3410 (4) ŵ = 0.10 mm1
c = 11.8471 (10) ÅT = 296 K
β = 109.980 (4)°Prism, light blue
V = 629.20 (8) Å30.34 × 0.26 × 0.24 mm
Z = 2
Bruker Kappa APEXII CCD diffractometer1635 independent reflections
Radiation source: fine-focus sealed tube1267 reflections with I > 2σ(I)
graphiteRint = 0.027
Detector resolution: 7.7 pixels mm-1θmax = 27.9°, θmin = 2.5°
ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −8→8
Tmin = 0.968, Tmax = 0.978l = −15→15
5969 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0515P)2 + 0.0165P] where P = (Fo2 + 2Fc2)/3
1635 reflections(Δ/σ)max < 0.001
166 parametersΔρmax = 0.13 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.63294 (18)0.2169 (3)0.16180 (14)0.0529 (5)
O21.0337 (2)0.6899 (4)0.31913 (18)0.0733 (7)
O30.60132 (17)0.6706 (3)0.05589 (13)0.0577 (6)
O40.4167 (2)0.6777 (4)0.14255 (16)0.0743 (8)
N10.80699 (19)0.4850 (3)0.24640 (16)0.0428 (6)
C10.7654 (3)0.2944 (3)0.18945 (19)0.0411 (7)
C20.9110 (3)0.2094 (4)0.17135 (19)0.0441 (7)
C30.9340 (3)0.0270 (4)0.1157 (2)0.0582 (9)
C41.0854 (4)−0.0072 (6)0.1117 (3)0.0743 (11)
C51.2072 (4)0.1337 (6)0.1601 (3)0.0749 (13)
C61.1836 (3)0.3191 (5)0.2150 (3)0.0651 (10)
C71.0331 (3)0.3524 (4)0.2200 (2)0.0483 (8)
C80.9695 (3)0.5322 (4)0.2691 (2)0.0482 (8)
C90.6940 (3)0.6354 (4)0.2664 (2)0.0475 (7)
C100.5531 (3)0.6619 (4)0.1499 (2)0.0474 (8)
C110.6453 (4)0.5844 (5)0.3757 (2)0.0649 (10)
C120.7868 (4)0.5100 (9)0.4803 (3)0.1015 (18)
C130.5689 (5)0.7743 (7)0.4111 (3)0.113 (2)
H30.85144−0.068510.082440.0699*
H3A0.523350.67521−0.005940.0866*
H41.10506−0.128880.075230.0890*
H51.307630.104960.156190.0897*
H61.265600.415950.246730.0782*
H90.748790.771810.282900.0570*
H110.566330.470430.353430.0778*
H12A0.871000.612310.497030.1522*
H12B0.823700.377480.460520.1522*
H12C0.755650.492910.549700.1522*
H13A0.645980.885790.436820.1699*
H13B0.531830.736780.475570.1699*
H13C0.480320.820950.343360.1699*
U11U22U33U12U13U23
O10.0399 (8)0.0645 (10)0.0516 (9)−0.0117 (8)0.0123 (7)−0.0078 (9)
O20.0627 (11)0.0696 (12)0.0762 (12)−0.0232 (11)0.0090 (9)−0.0166 (12)
O30.0446 (9)0.0857 (14)0.0411 (8)0.0087 (10)0.0125 (6)0.0097 (10)
O40.0454 (10)0.1094 (17)0.0700 (12)0.0175 (12)0.0223 (8)0.0094 (13)
N10.0363 (10)0.0467 (10)0.0405 (9)0.0011 (9)0.0067 (7)−0.0027 (8)
C10.0395 (12)0.0453 (12)0.0350 (11)−0.0019 (10)0.0082 (9)0.0017 (10)
C20.0435 (11)0.0503 (12)0.0389 (11)0.0056 (11)0.0148 (9)0.0077 (11)
C30.0675 (16)0.0585 (16)0.0540 (15)0.0075 (13)0.0276 (12)0.0010 (12)
C40.090 (2)0.075 (2)0.0713 (19)0.027 (2)0.0449 (17)0.0102 (17)
C50.0615 (18)0.102 (3)0.0733 (19)0.0265 (19)0.0387 (15)0.024 (2)
C60.0426 (14)0.089 (2)0.0635 (16)−0.0001 (14)0.0179 (12)0.0150 (16)
C70.0373 (12)0.0646 (16)0.0406 (12)0.0017 (11)0.0102 (9)0.0093 (11)
C80.0397 (12)0.0545 (15)0.0425 (12)−0.0060 (11)0.0039 (10)0.0036 (11)
C90.0494 (13)0.0479 (13)0.0441 (12)0.0053 (11)0.0146 (10)−0.0039 (11)
C100.0455 (13)0.0529 (14)0.0445 (12)0.0078 (11)0.0164 (9)0.0022 (11)
C110.0712 (18)0.081 (2)0.0475 (14)0.0195 (15)0.0266 (13)0.0049 (13)
C120.104 (3)0.153 (4)0.0490 (17)0.039 (3)0.0281 (16)0.029 (2)
C130.155 (4)0.126 (4)0.076 (2)0.062 (3)0.062 (2)0.003 (2)
O1—C11.216 (3)C9—C101.525 (3)
O2—C81.203 (3)C9—C111.534 (4)
O3—C101.325 (3)C11—C121.510 (5)
O4—C101.193 (3)C11—C131.512 (6)
O3—H3A0.8200C3—H30.9300
N1—C81.412 (3)C4—H40.9300
N1—C91.464 (3)C5—H50.9300
N1—C11.372 (3)C6—H60.9300
C1—C21.487 (4)C9—H90.9800
C2—C31.381 (4)C11—H110.9800
C2—C71.382 (4)C12—H12A0.9600
C3—C41.383 (5)C12—H12B0.9600
C4—C51.371 (5)C12—H12C0.9600
C5—C61.394 (5)C13—H13A0.9600
C6—C71.379 (4)C13—H13B0.9600
C7—C81.478 (4)C13—H13C0.9600
C10—O3—H3A109.00C9—C11—C12111.1 (3)
C1—N1—C9124.6 (2)C2—C3—H3122.00
C8—N1—C9123.3 (2)C4—C3—H3122.00
C1—N1—C8111.6 (2)C3—C4—H4119.00
O1—C1—C2129.0 (2)C5—C4—H4119.00
N1—C1—C2106.7 (2)C4—C5—H5119.00
O1—C1—N1124.3 (2)C6—C5—H5119.00
C1—C2—C7107.7 (2)C5—C6—H6122.00
C3—C2—C7121.6 (3)C7—C6—H6122.00
C1—C2—C3130.7 (2)N1—C9—H9107.00
C2—C3—C4117.0 (3)C10—C9—H9106.00
C3—C4—C5121.7 (3)C11—C9—H9106.00
C4—C5—C6121.4 (3)C9—C11—H11108.00
C5—C6—C7117.0 (3)C12—C11—H11108.00
C2—C7—C8108.5 (2)C13—C11—H11108.00
C6—C7—C8130.1 (3)C11—C12—H12A109.00
C2—C7—C6121.4 (3)C11—C12—H12B109.00
O2—C8—N1123.7 (2)C11—C12—H12C109.00
O2—C8—C7130.8 (3)H12A—C12—H12B109.00
N1—C8—C7105.5 (2)H12A—C12—H12C110.00
N1—C9—C10108.94 (19)H12B—C12—H12C109.00
N1—C9—C11114.1 (2)C11—C13—H13A109.00
C10—C9—C11113.8 (2)C11—C13—H13B109.00
O3—C10—C9111.2 (2)C11—C13—H13C109.00
O4—C10—C9125.4 (2)H13A—C13—H13B109.00
O3—C10—O4123.4 (2)H13A—C13—H13C109.00
C9—C11—C13110.5 (3)H13B—C13—H13C109.00
C12—C11—C13110.5 (3)
C8—N1—C1—O1178.8 (2)C3—C2—C7—C60.0 (4)
C8—N1—C1—C2−0.8 (2)C3—C2—C7—C8178.3 (2)
C9—N1—C1—O1−9.3 (3)C2—C3—C4—C5−0.3 (4)
C9—N1—C1—C2171.12 (19)C3—C4—C5—C6−0.4 (5)
C1—N1—C8—O2−179.3 (2)C4—C5—C6—C71.0 (5)
C1—N1—C8—C70.5 (2)C5—C6—C7—C2−0.8 (4)
C9—N1—C8—O28.7 (4)C5—C6—C7—C8−178.6 (3)
C9—N1—C8—C7−171.57 (19)C2—C7—C8—O2179.8 (3)
C1—N1—C9—C10−46.8 (3)C2—C7—C8—N10.1 (3)
C1—N1—C9—C1181.6 (3)C6—C7—C8—O2−2.2 (5)
C8—N1—C9—C10124.2 (2)C6—C7—C8—N1178.1 (3)
C8—N1—C9—C11−107.4 (3)N1—C9—C10—O3−41.0 (3)
O1—C1—C2—C32.6 (4)N1—C9—C10—O4140.5 (3)
O1—C1—C2—C7−178.8 (2)C11—C9—C10—O3−169.6 (2)
N1—C1—C2—C3−177.8 (2)C11—C9—C10—O412.0 (4)
N1—C1—C2—C70.8 (2)N1—C9—C11—C1240.7 (4)
C1—C2—C3—C4179.0 (3)N1—C9—C11—C13163.8 (3)
C7—C2—C3—C40.5 (4)C10—C9—C11—C12166.6 (3)
C1—C2—C7—C6−178.8 (2)C10—C9—C11—C13−70.4 (3)
C1—C2—C7—C8−0.5 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O1i0.821.912.723 (2)169
C13—H13C···O40.962.433.064 (4)124
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O1i0.821.912.723 (2)169
C13—H13C⋯O40.962.433.064 (4)124

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (2R)-2-(1,3-Dioxoisoindolin-2-yl)-4-(methyl-sulfan-yl)butanoic acid.

Authors:  Abdul Rauf Raza; M Nawaz Tahir; Aisha Saddiqa; Muhammad Danish; M Saeed Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-25

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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