Literature DB >> 22065499

1-(tert-But-oxy-carbon-yl)piperidine-4-carb-oxy-lic acid.

Hoong-Kun Fun, Suhana Arshad, S Vivek, G K Nagaraja.   

Abstract

In the title compound, C(11)H(19)NO(4), the piperidine ring adopts a chair conformation. In the crystal, mol-ecules are linked by inter-molecular O-H⋯O and C-H⋯O hydrogen bonds, forming a layer parallel to the bc plane.

Entities:  

Year:  2011        PMID: 22065499      PMCID: PMC3200981          DOI: 10.1107/S1600536811030145

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and application of helical peptides, see: Albrecht & Stortz (2005 ▶); Garner & Harding (2007 ▶); Wang et al. (2008 ▶); Walensky et al. (2004 ▶); Boal et al. (2007 ▶). For bond-length data, see: Allen et al. (1987 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For stability of the temperature controller used for data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C11H19NO4 M = 229.27 Monoclinic, a = 10.7006 (3) Å b = 6.5567 (2) Å c = 17.9297 (6) Å β = 104.564 (2)° V = 1217.54 (6) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.57 × 0.21 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.948, T max = 0.993 5360 measured reflections 2116 independent reflections 1762 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.092 S = 1.07 2116 reflections 152 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811030145/is2754sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030145/is2754Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811030145/is2754Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H19NO4F(000) = 496
Mr = 229.27Dx = 1.251 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1750 reflections
a = 10.7006 (3) Åθ = 2.4–28.5°
b = 6.5567 (2) ŵ = 0.10 mm1
c = 17.9297 (6) ÅT = 100 K
β = 104.564 (2)°Plate, colourless
V = 1217.54 (6) Å30.57 × 0.21 × 0.08 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer2116 independent reflections
Radiation source: fine-focus sealed tube1762 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→11
Tmin = 0.948, Tmax = 0.993k = −7→7
5360 measured reflectionsl = −16→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0362P)2 + 0.3737P] where P = (Fo2 + 2Fc2)/3
2116 reflections(Δ/σ)max < 0.001
152 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.22 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.26358 (11)−0.05214 (18)0.13924 (6)0.0249 (3)
O20.20095 (11)0.21800 (16)0.20083 (6)0.0229 (3)
O30.34156 (12)−0.53547 (17)0.46087 (7)0.0265 (3)
O40.35972 (11)−0.25776 (18)0.53522 (6)0.0244 (3)
N10.34480 (13)−0.0015 (2)0.26790 (7)0.0188 (3)
C10.42896 (16)−0.1805 (2)0.27802 (9)0.0213 (4)
H1A0.5202−0.13640.29480.026*
H1B0.4167−0.25250.22820.026*
C20.39922 (16)−0.3257 (2)0.33783 (9)0.0195 (4)
H2A0.4628−0.43850.34730.023*
H2B0.3123−0.38550.31760.023*
C30.40397 (15)−0.2158 (2)0.41359 (9)0.0178 (4)
H3A0.4949−0.17050.43610.021*
C40.31744 (15)−0.0254 (2)0.39936 (9)0.0186 (4)
H4A0.2259−0.06770.38190.022*
H4B0.32840.05090.44820.022*
C50.35063 (16)0.1126 (2)0.33908 (9)0.0202 (4)
H5A0.28910.22800.32800.024*
H5B0.43850.16900.35910.024*
C60.26959 (15)0.0473 (2)0.19822 (9)0.0190 (4)
C70.10863 (15)0.2991 (3)0.13127 (9)0.0221 (4)
C80.06014 (17)0.4903 (3)0.16286 (10)0.0288 (4)
H8A0.01890.45280.20390.043*
H8B−0.00270.55960.12140.043*
H8C0.13300.58180.18370.043*
C90.17864 (18)0.3540 (3)0.07020 (10)0.0330 (5)
H9A0.25380.43910.09320.049*
H9B0.12010.42940.02850.049*
H9C0.20730.22910.04950.049*
C100.00063 (17)0.1463 (3)0.10281 (10)0.0303 (4)
H10A−0.04000.11370.14460.046*
H10B0.03610.02150.08610.046*
H10C−0.06390.20480.05940.046*
C110.36557 (14)−0.3565 (2)0.47085 (9)0.0183 (4)
H1O40.333 (2)−0.340 (4)0.5652 (13)0.058 (7)*
U11U22U33U12U13U23
O10.0329 (7)0.0282 (7)0.0148 (6)0.0004 (5)0.0084 (5)−0.0034 (5)
O20.0274 (6)0.0221 (6)0.0170 (6)0.0056 (5)0.0018 (5)0.0005 (5)
O30.0390 (7)0.0190 (7)0.0240 (7)−0.0008 (5)0.0125 (6)0.0008 (5)
O40.0353 (7)0.0226 (7)0.0175 (6)−0.0008 (5)0.0109 (6)0.0003 (5)
N10.0264 (8)0.0164 (7)0.0138 (7)0.0028 (6)0.0056 (6)0.0008 (6)
C10.0253 (9)0.0206 (9)0.0201 (9)0.0064 (7)0.0099 (7)−0.0003 (7)
C20.0234 (9)0.0174 (8)0.0191 (9)0.0044 (7)0.0082 (7)0.0014 (7)
C30.0181 (8)0.0183 (9)0.0168 (8)−0.0005 (7)0.0043 (7)0.0012 (7)
C40.0218 (9)0.0189 (9)0.0153 (8)0.0010 (7)0.0051 (7)−0.0019 (7)
C50.0271 (9)0.0166 (8)0.0164 (8)0.0002 (7)0.0048 (7)−0.0011 (7)
C60.0215 (9)0.0184 (9)0.0190 (9)−0.0017 (7)0.0086 (7)0.0033 (7)
C70.0205 (9)0.0276 (9)0.0159 (8)0.0012 (7)0.0006 (7)0.0046 (7)
C80.0264 (10)0.0274 (10)0.0296 (10)0.0053 (8)0.0017 (8)0.0026 (8)
C90.0311 (10)0.0395 (11)0.0297 (10)0.0074 (9)0.0101 (8)0.0152 (9)
C100.0257 (10)0.0341 (11)0.0295 (10)−0.0009 (8)0.0039 (8)−0.0021 (8)
C110.0167 (8)0.0204 (9)0.0170 (8)0.0034 (7)0.0025 (7)−0.0003 (7)
O1—C61.2303 (18)C4—C51.519 (2)
O2—C61.3457 (19)C4—H4A0.9900
O2—C71.4815 (18)C4—H4B0.9900
O3—C111.2050 (19)C5—H5A0.9900
O4—C111.3384 (18)C5—H5B0.9900
O4—H1O40.86 (2)C7—C91.517 (2)
N1—C61.344 (2)C7—C101.518 (2)
N1—C11.463 (2)C7—C81.519 (2)
N1—C51.4669 (19)C8—H8A0.9800
C1—C21.526 (2)C8—H8B0.9800
C1—H1A0.9900C8—H8C0.9800
C1—H1B0.9900C9—H9A0.9800
C2—C31.527 (2)C9—H9B0.9800
C2—H2A0.9900C9—H9C0.9800
C2—H2B0.9900C10—H10A0.9800
C3—C111.512 (2)C10—H10B0.9800
C3—C41.537 (2)C10—H10C0.9800
C3—H3A1.0000
C6—O2—C7121.57 (12)C4—C5—H5B109.6
C11—O4—H1O4109.2 (15)H5A—C5—H5B108.1
C6—N1—C1120.84 (13)O1—C6—N1124.22 (15)
C6—N1—C5124.88 (13)O1—C6—O2124.04 (15)
C1—N1—C5114.27 (12)N1—C6—O2111.74 (13)
N1—C1—C2110.93 (12)O2—C7—C9110.31 (13)
N1—C1—H1A109.5O2—C7—C10109.63 (13)
C2—C1—H1A109.5C9—C7—C10112.73 (15)
N1—C1—H1B109.5O2—C7—C8101.56 (12)
C2—C1—H1B109.5C9—C7—C8110.50 (14)
H1A—C1—H1B108.0C10—C7—C8111.56 (14)
C1—C2—C3111.36 (13)C7—C8—H8A109.5
C1—C2—H2A109.4C7—C8—H8B109.5
C3—C2—H2A109.4H8A—C8—H8B109.5
C1—C2—H2B109.4C7—C8—H8C109.5
C3—C2—H2B109.4H8A—C8—H8C109.5
H2A—C2—H2B108.0H8B—C8—H8C109.5
C11—C3—C2111.22 (13)C7—C9—H9A109.5
C11—C3—C4110.67 (12)C7—C9—H9B109.5
C2—C3—C4110.60 (13)H9A—C9—H9B109.5
C11—C3—H3A108.1C7—C9—H9C109.5
C2—C3—H3A108.1H9A—C9—H9C109.5
C4—C3—H3A108.1H9B—C9—H9C109.5
C5—C4—C3111.29 (12)C7—C10—H10A109.5
C5—C4—H4A109.4C7—C10—H10B109.5
C3—C4—H4A109.4H10A—C10—H10B109.5
C5—C4—H4B109.4C7—C10—H10C109.5
C3—C4—H4B109.4H10A—C10—H10C109.5
H4A—C4—H4B108.0H10B—C10—H10C109.5
N1—C5—C4110.43 (12)O3—C11—O4122.99 (15)
N1—C5—H5A109.6O3—C11—C3125.29 (14)
C4—C5—H5A109.6O4—C11—C3111.72 (13)
N1—C5—H5B109.6
C6—N1—C1—C2−123.01 (15)C1—N1—C6—O2−179.20 (13)
C5—N1—C1—C256.56 (17)C5—N1—C6—O21.3 (2)
N1—C1—C2—C3−53.55 (17)C7—O2—C6—O11.2 (2)
C1—C2—C3—C11176.11 (13)C7—O2—C6—N1−178.49 (13)
C1—C2—C3—C452.71 (17)C6—O2—C7—C9−61.40 (18)
C11—C3—C4—C5−177.27 (13)C6—O2—C7—C1063.30 (17)
C2—C3—C4—C5−53.56 (17)C6—O2—C7—C8−178.59 (13)
C6—N1—C5—C4122.38 (16)C2—C3—C11—O34.2 (2)
C1—N1—C5—C4−57.18 (17)C4—C3—C11—O3127.55 (17)
C3—C4—C5—N154.71 (17)C2—C3—C11—O4−175.19 (13)
C1—N1—C6—O11.1 (2)C4—C3—C11—O4−51.83 (17)
C5—N1—C6—O1−178.39 (14)
D—H···AD—HH···AD···AD—H···A
O4—H1O4···O1i0.86 (2)1.82 (2)2.6562 (16)164 (2)
C5—H5B···O4ii0.992.563.476 (2)154.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H1O4⋯O1i0.86 (2)1.82 (2)2.6562 (16)164 (2)
C5—H5B⋯O4ii0.992.563.476 (2)154

Symmetry codes: (i) ; (ii) .

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