Literature DB >> 22065495

10,21-Dimethyl-2,7,13,18-tetraphenyl-3,6,14,17-tetraazatricyclo[17.3.1.1]tetracosa-1(23),2,6,8(24),9,11,13,17,19,21-decaene-23,24-diol cyclohexane 0.33-solvate.

Ashish K Asatkar, Vinay K Verma, Tripti A Jain, Rajendra Singh, Sushil K Gupta, Ray J Butcher.   

Abstract

The title compound, C(46)H(40)N(4)O(2)·0.33C(6)H(12), was obtained unintentionally as a product of an attempted synthesis of a cadmium(II) complex of the [2n class="Chemical">,6-{PhSe(CH(2))(2)N=CPh}(2)C(6)H(2)(4-Me)(OH)] ligand. The full tetra-imino-diphenol macrocyclic ligand is generated by the application of an inversion centre. The macrocyclic ligand features strong intra-molecular O-H⋯N hydrogen bonds. The dihedral angles formed between the phenyl ring incorporated within the macrocycle and the peripheral phenyl rings are 82.99 (8) and 88.20 (8)°. The cyclo-hexane solvent mol-ecule lies about a site of [Formula: see text] symmetry. Other solvent within the lattice was disordered and was treated with the SQUEEZE routine [Spek (2009). Acta Cryst. D65, 148-155].

Entities:  

Year:  2011        PMID: 22065495      PMCID: PMC3201359          DOI: 10.1107/S1600536811036622

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For information on phenol-based Schiff base ligands, complexes and their applications, see: Vigato et al. (2007 ▶); Fenton et al. (2010 ▶); Avaji et al. (2009 ▶); Na et al. (2006 ▶); Dutta et al. (2004 ▶); Mandal et al. (1989 ▶); Gupta et al. (2002 ▶, 2010 ▶).

Experimental

Crystal data

3C46H40N4O2·C6H12 M = 2126.62 Rhombohedral, a = 28.0966 (2) Å c = 16.0265 (2) Å α = 90° γ = 120° V = 10956.6 (2) Å3 Z = 3 Mo Kα radiation μ = 0.06 mm−1 T = 295 K 0.44 × 0.41 × 0.32 mm

Data collection

Oxford Diffraction Gemini R diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009 ▶) T min = 0.173, T max = 1.000 10270 measured reflections 5016 independent reflections 3022 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.222 S = 0.93 5016 reflections 246 parameters H-atom parameters constrained Δρmax = 0.85 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis n class="Disease">RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811036622/tk2788sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036622/tk2788Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811036622/tk2788Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
3C46H40N4O2·C6H12F(000) = 3384
Mr = 2126.62Dx = 0.967 Mg m3
Rhombohedral, R3Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -R 3Cell parameters from 3689 reflections
a = 28.0966 (2) Åθ = 4.2–77.4°
c = 16.0265 (2) ŵ = 0.06 mm1
α = 90°T = 295 K
γ = 120°Block, yellow
V = 10956.6 (2) Å30.44 × 0.41 × 0.32 mm
Z = 3
Oxford Diffraction Gemini R diffractometer5016 independent reflections
Radiation source: fine-focus sealed tube3022 reflections with I > 2σ(I)
graphiteRint = 0.020
Detector resolution: 10.5081 pixels mm-1θmax = 26.8°, θmin = 2.1°
φ and ω scansh = −34→33
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)k = −35→31
Tmin = 0.173, Tmax = 1.000l = −17→19
10270 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.222H-atom parameters constrained
S = 0.93w = 1/[σ2(Fo2) + (0.1584P)2] where P = (Fo2 + 2Fc2)/3
5016 reflections(Δ/σ)max < 0.001
246 parametersΔρmax = 0.85 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.00757 (6)0.45286 (6)0.94763 (8)0.0730 (4)
H1O−0.00350.44230.99520.088*
N1A0.01498 (8)0.43270 (7)1.09956 (10)0.0711 (4)
N1B0.04471 (7)0.53952 (7)0.76712 (10)0.0743 (5)
C10.06233 (8)0.48575 (8)0.94867 (12)0.0624 (4)
C20.09343 (8)0.49450 (8)1.02149 (12)0.0645 (5)
C30.15063 (9)0.52866 (9)1.01686 (13)0.0724 (5)
H3A0.17140.53431.06480.087*
C40.17723 (9)0.55424 (9)0.94371 (14)0.0757 (5)
C50.14523 (9)0.54553 (9)0.87394 (13)0.0752 (5)
H5A0.16240.56290.82440.090*
C60.08866 (8)0.51206 (8)0.87453 (12)0.0669 (5)
C70.23917 (11)0.59108 (13)0.9403 (2)0.1046 (9)
H7A0.25480.57400.90680.157*
H7B0.25390.59680.99580.157*
H7C0.24800.62580.91610.157*
C1A−0.01466 (10)0.40063 (10)1.17263 (14)0.0781 (6)
H1AA0.01000.41211.22020.094*
H1AB−0.02750.36201.16240.094*
C2A0.06650 (9)0.46672 (8)1.10066 (12)0.0663 (5)
C3A0.10126 (9)0.48103 (9)1.17789 (12)0.0694 (5)
C4A0.11904 (9)0.44689 (10)1.20864 (14)0.0775 (6)
H4AA0.11070.41471.18060.093*
C5A0.14966 (11)0.46100 (12)1.28222 (16)0.0909 (7)
H5AA0.16210.43821.30300.109*
C6A0.16148 (12)0.50778 (13)1.32378 (18)0.0991 (8)
H6AA0.18170.51681.37300.119*
C7A0.14353 (14)0.54175 (13)1.29287 (19)0.1052 (9)
H7AA0.15170.57381.32140.126*
C8A0.11359 (12)0.52882 (11)1.22012 (15)0.0878 (7)
H8AA0.10170.55211.19950.105*
C1B0.06337 (9)0.59170 (9)0.80786 (13)0.0762 (6)
H1BA0.08900.62120.77190.091*
H1BB0.08240.59310.85910.091*
C2B0.05487 (8)0.50364 (8)0.79799 (12)0.0689 (5)
C3B0.03317 (10)0.45037 (9)0.75241 (13)0.0770 (6)
C4B−0.00983 (11)0.43386 (12)0.69686 (16)0.0958 (8)
H4BA−0.02620.45530.68920.115*
C5B−0.02877 (14)0.38494 (14)0.6522 (2)0.1131 (10)
H5BA−0.05840.37360.61610.136*
C6B−0.00516 (16)0.35455 (13)0.6604 (2)0.1179 (12)
H6BA−0.01720.32300.62830.141*
C7B0.03724 (17)0.36951 (12)0.7163 (2)0.1160 (11)
H7BA0.05330.34770.72290.139*
C8B0.05599 (13)0.41755 (11)0.76307 (17)0.0957 (8)
H8BA0.08410.42740.80160.115*
C1S0.2722 (4)0.6162 (8)1.1813 (4)0.244 (6)
H1SA0.26860.61321.24160.293*
H1SB0.23790.58791.15730.293*
U11U22U33U12U13U23
O10.0741 (8)0.0811 (9)0.0525 (7)0.0303 (7)0.0009 (6)0.0076 (6)
N1A0.0838 (11)0.0741 (10)0.0554 (9)0.0395 (9)0.0047 (8)0.0089 (7)
N1B0.0852 (11)0.0795 (10)0.0536 (9)0.0378 (9)0.0032 (8)0.0041 (7)
C10.0697 (11)0.0624 (9)0.0551 (10)0.0330 (9)0.0014 (8)0.0006 (7)
C20.0766 (11)0.0649 (10)0.0563 (10)0.0387 (9)0.0002 (8)0.0008 (8)
C30.0747 (12)0.0779 (12)0.0679 (12)0.0407 (10)−0.0049 (9)−0.0011 (9)
C40.0710 (12)0.0788 (12)0.0751 (13)0.0358 (10)0.0028 (10)0.0010 (10)
C50.0795 (13)0.0786 (12)0.0645 (12)0.0372 (10)0.0110 (9)0.0067 (10)
C60.0750 (11)0.0684 (10)0.0557 (10)0.0347 (9)0.0045 (8)0.0023 (8)
C70.0771 (15)0.119 (2)0.1015 (19)0.0369 (14)0.0056 (13)0.0134 (16)
C1A0.0922 (14)0.0802 (13)0.0623 (12)0.0433 (11)0.0065 (10)0.0161 (9)
C2A0.0833 (13)0.0694 (11)0.0554 (10)0.0452 (10)−0.0006 (8)0.0010 (8)
C3A0.0833 (12)0.0795 (12)0.0524 (9)0.0460 (10)0.0008 (8)0.0044 (8)
C4A0.0883 (14)0.0843 (13)0.0722 (13)0.0523 (12)−0.0018 (10)0.0034 (10)
C5A0.0928 (15)0.1126 (19)0.0818 (15)0.0622 (14)−0.0079 (12)0.0121 (14)
C6A0.1021 (18)0.120 (2)0.0752 (15)0.0557 (17)−0.0221 (13)−0.0040 (14)
C7A0.133 (2)0.1024 (18)0.0819 (16)0.0597 (18)−0.0228 (16)−0.0222 (14)
C8A0.1165 (18)0.0890 (15)0.0726 (13)0.0622 (14)−0.0160 (13)−0.0088 (11)
C1B0.0842 (13)0.0747 (12)0.0632 (11)0.0349 (10)0.0047 (10)0.0084 (9)
C2B0.0748 (11)0.0757 (11)0.0480 (9)0.0315 (9)0.0094 (8)0.0048 (8)
C3B0.0891 (14)0.0745 (12)0.0540 (10)0.0309 (11)0.0141 (9)0.0006 (9)
C4B0.0947 (16)0.1020 (17)0.0703 (14)0.0340 (14)0.0022 (12)−0.0152 (12)
C5B0.107 (2)0.109 (2)0.0857 (18)0.0260 (17)0.0073 (15)−0.0288 (16)
C6B0.124 (2)0.0865 (18)0.098 (2)0.0187 (17)0.0379 (19)−0.0227 (15)
C7B0.156 (3)0.0860 (17)0.099 (2)0.0557 (19)0.036 (2)0.0008 (15)
C8B0.125 (2)0.0843 (15)0.0737 (15)0.0490 (15)0.0074 (14)−0.0013 (12)
C1S0.195 (7)0.318 (16)0.099 (4)0.037 (6)−0.012 (4)−0.054 (8)
O1—C11.342 (2)C4A—H4AA0.9300
O1—H1O0.8200C5A—C6A1.358 (4)
N1A—C2A1.275 (3)C5A—H5AA0.9300
N1A—C1A1.458 (2)C6A—C7A1.375 (4)
N1B—C2B1.277 (3)C6A—H6AA0.9300
N1B—C1B1.443 (3)C7A—C8A1.376 (4)
C1—C61.400 (3)C7A—H7AA0.9300
C1—C21.404 (3)C8A—H8AA0.9300
C2—C31.402 (3)C1B—C1Ai1.521 (3)
C2—C2A1.484 (3)C1B—H1BA0.9700
C3—C41.383 (3)C1B—H1BB0.9700
C3—H3A0.9300C2B—C3B1.494 (3)
C4—C51.378 (3)C3B—C8B1.372 (4)
C4—C71.517 (3)C3B—C4B1.381 (4)
C5—C61.384 (3)C4B—C5B1.398 (4)
C5—H5A0.9300C4B—H4BA0.9300
C6—C2B1.496 (3)C5B—C6B1.324 (5)
C7—H7A0.9600C5B—H5BA0.9300
C7—H7B0.9600C6B—C7B1.378 (5)
C7—H7C0.9600C6B—H6BA0.9300
C1A—C1Bi1.520 (3)C7B—C8B1.396 (4)
C1A—H1AA0.9700C7B—H7BA0.9300
C1A—H1AB0.9700C8B—H8BA0.9300
C2A—C3A1.502 (3)C1S—C1Sii1.657 (7)
C3A—C4A1.375 (3)C1S—C1Siii1.658 (7)
C3A—C8A1.384 (3)C1S—H1SA0.9700
C4A—C5A1.395 (3)C1S—H1SB0.9700
C1—O1—H1O109.5C4A—C5A—H5AA119.8
C2A—N1A—C1A122.38 (18)C5A—C6A—C7A119.9 (2)
C2B—N1B—C1B121.06 (18)C5A—C6A—H6AA120.1
O1—C1—C6118.32 (17)C7A—C6A—H6AA120.1
O1—C1—C2122.01 (17)C6A—C7A—C8A120.7 (3)
C6—C1—C2119.67 (18)C6A—C7A—H7AA119.7
C3—C2—C1118.41 (18)C8A—C7A—H7AA119.7
C3—C2—C2A120.92 (18)C7A—C8A—C3A119.6 (2)
C1—C2—C2A120.65 (18)C7A—C8A—H8AA120.2
C4—C3—C2122.5 (2)C3A—C8A—H8AA120.2
C4—C3—H3A118.8N1B—C1B—C1Ai109.98 (19)
C2—C3—H3A118.8N1B—C1B—H1BA109.7
C5—C4—C3117.41 (19)C1Ai—C1B—H1BA109.7
C5—C4—C7121.1 (2)N1B—C1B—H1BB109.7
C3—C4—C7121.5 (2)C1Ai—C1B—H1BB109.7
C4—C5—C6122.7 (2)H1BA—C1B—H1BB108.2
C4—C5—H5A118.6N1B—C2B—C3B117.44 (19)
C6—C5—H5A118.6N1B—C2B—C6124.58 (19)
C5—C6—C1119.25 (19)C3B—C2B—C6117.94 (19)
C5—C6—C2B121.62 (18)C8B—C3B—C4B118.6 (2)
C1—C6—C2B119.13 (17)C8B—C3B—C2B121.2 (2)
C4—C7—H7A109.5C4B—C3B—C2B120.1 (2)
C4—C7—H7B109.5C3B—C4B—C5B120.0 (3)
H7A—C7—H7B109.5C3B—C4B—H4BA120.0
C4—C7—H7C109.5C5B—C4B—H4BA120.0
H7A—C7—H7C109.5C6B—C5B—C4B121.1 (3)
H7B—C7—H7C109.5C6B—C5B—H5BA119.5
N1A—C1A—C1Bi110.73 (17)C4B—C5B—H5BA119.5
N1A—C1A—H1AA109.5C5B—C6B—C7B120.2 (3)
C1Bi—C1A—H1AA109.5C5B—C6B—H6BA119.9
N1A—C1A—H1AB109.5C7B—C6B—H6BA119.9
C1Bi—C1A—H1AB109.5C6B—C7B—C8B119.6 (3)
H1AA—C1A—H1AB108.1C6B—C7B—H7BA120.2
N1A—C2A—C2118.15 (18)C8B—C7B—H7BA120.2
N1A—C2A—C3A123.70 (18)C3B—C8B—C7B120.4 (3)
C2—C2A—C3A118.15 (18)C3B—C8B—H8BA119.8
C4A—C3A—C8A119.9 (2)C7B—C8B—H8BA119.8
C4A—C3A—C2A121.5 (2)C1Sii—C1S—C1Siii112.3 (4)
C8A—C3A—C2A118.47 (18)C1Sii—C1S—H1SA109.1
C3A—C4A—C5A119.5 (2)C1Siii—C1S—H1SA109.1
C3A—C4A—H4AA120.3C1Sii—C1S—H1SB109.1
C5A—C4A—H4AA120.3C1Siii—C1S—H1SB109.1
C6A—C5A—C4A120.5 (2)H1SA—C1S—H1SB107.9
C6A—C5A—H5AA119.8
O1—C1—C2—C3178.78 (18)C8A—C3A—C4A—C5A−0.3 (4)
C6—C1—C2—C3−1.5 (3)C2A—C3A—C4A—C5A−177.8 (2)
O1—C1—C2—C2A0.8 (3)C3A—C4A—C5A—C6A0.6 (4)
C6—C1—C2—C2A−179.53 (17)C4A—C5A—C6A—C7A−0.5 (4)
C1—C2—C3—C40.6 (3)C5A—C6A—C7A—C8A0.1 (5)
C2A—C2—C3—C4178.54 (19)C6A—C7A—C8A—C3A0.3 (5)
C2—C3—C4—C50.7 (3)C4A—C3A—C8A—C7A−0.2 (4)
C2—C3—C4—C7179.9 (2)C2A—C3A—C8A—C7A177.4 (2)
C3—C4—C5—C6−1.0 (3)C2B—N1B—C1B—C1Ai−122.1 (2)
C7—C4—C5—C6179.8 (2)C1B—N1B—C2B—C3B178.98 (18)
C4—C5—C6—C10.0 (3)C1B—N1B—C2B—C6−3.4 (3)
C4—C5—C6—C2B179.6 (2)C5—C6—C2B—N1B−73.2 (3)
O1—C1—C6—C5−179.04 (18)C1—C6—C2B—N1B106.3 (2)
C2—C1—C6—C51.3 (3)C5—C6—C2B—C3B104.3 (2)
O1—C1—C6—C2B1.4 (3)C1—C6—C2B—C3B−76.1 (2)
C2—C1—C6—C2B−178.29 (18)N1B—C2B—C3B—C8B158.1 (2)
C2A—N1A—C1A—C1Bi126.2 (2)C6—C2B—C3B—C8B−19.6 (3)
C1A—N1A—C2A—C2175.90 (17)N1B—C2B—C3B—C4B−20.4 (3)
C1A—N1A—C2A—C3A−5.3 (3)C6—C2B—C3B—C4B161.9 (2)
C3—C2—C2A—N1A−174.41 (18)C8B—C3B—C4B—C5B−0.8 (4)
C1—C2—C2A—N1A3.5 (3)C2B—C3B—C4B—C5B177.8 (2)
C3—C2—C2A—C3A6.7 (3)C3B—C4B—C5B—C6B−1.9 (4)
C1—C2—C2A—C3A−175.39 (17)C4B—C5B—C6B—C7B2.9 (5)
N1A—C2A—C3A—C4A78.9 (3)C5B—C6B—C7B—C8B−1.4 (5)
C2—C2A—C3A—C4A−102.2 (2)C4B—C3B—C8B—C7B2.3 (4)
N1A—C2A—C3A—C8A−98.6 (3)C2B—C3B—C8B—C7B−176.3 (2)
C2—C2A—C3A—C8A80.2 (3)C6B—C7B—C8B—C3B−1.3 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1O···N1A0.821.812.532 (2)146.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯N1A0.821.812.532 (2)146
  6 in total

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5.  Dichlorido[μ-10,21-dimethyl-2,7,13,18-tetra-phenyl-3,6,14,17-tetra-aza-tricyclo-[17.3.1.1]tetra-cosa-1(23),2,6,8,10,12(24),13,17,19,21-deca-ene-23,24-diolato]dicopper(II) ethanol hemisolvate dihydrate.

Authors:  Sushil K Gupta; Chanda Anjana; Ray J Butcher; Neha Sen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-10

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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