Literature DB >> 22065494

2,3-Dichloro-pyridine.

Li-Juan Luo, Jian-Quan Weng.   

Abstract

The complete mol-ecule of the title compound, C(5)H(3)Cl(2)N, is generated by crystallographic twofold symmetry, which forces the pyridine N atom and the opposite C-H group to be statistically disordered. In the crystal, weak aromatic π-π stacking [centroid-centroid separation = 3.805 (4) Å and slippage = 1.704 Å] leads to [100] stacks of mol-ecules. Short Cl⋯Cl contacts [3.334 (3) Å] are also observed.

Entities:  

Year:  2011        PMID: 22065494      PMCID: PMC3200617          DOI: 10.1107/S1600536811030261

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of related compounds, see: Liu et al. (2011 ▶). For related structures, see: Ma et al. (2007 ▶), Liu & Liu (2011 ▶).

Experimental

Crystal data

C5H3Cl2N M = 147.98 Monoclinic, a = 3.805 (3) Å b = 14.196 (12) Å c = 10.68 (1) Å β = 97.221 (14)° V = 572.3 (9) Å3 Z = 4 Mo Kα radiation μ = 1.00 mm−1 T = 113 K 0.36 × 0.04 × 0.04 mm

Data collection

Rigaku Saturn CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.714, T max = 0.961 2936 measured reflections 675 independent reflections 541 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.054 S = 1.01 675 reflections 43 parameters 2 restraints All H-atom parameters refined Δρmax = 0.31 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2005 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811030261/hb5953sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030261/hb5953Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811030261/hb5953Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H3Cl2NF(000) = 296
Mr = 147.98Dx = 1.717 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 985 reflections
a = 3.805 (3) Åθ = 1.9–27.8°
b = 14.196 (12) ŵ = 1.00 mm1
c = 10.68 (1) ÅT = 113 K
β = 97.221 (14)°Prism, colorless
V = 572.3 (9) Å30.36 × 0.04 × 0.04 mm
Z = 4
Rigaku Saturn CCD diffractometer675 independent reflections
Radiation source: rotating anode541 reflections with I > 2σ(I)
multilayerRint = 0.044
Detector resolution: 14.63 pixels mm-1θmax = 27.8°, θmin = 2.9°
ω and φ scansh = −4→4
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)k = −18→18
Tmin = 0.714, Tmax = 0.961l = −13→13
2936 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.054All H-atom parameters refined
S = 1.01w = 1/[σ2(Fo2) + (0.022P)2] where P = (Fo2 + 2Fc2)/3
675 reflections(Δ/σ)max = 0.001
43 parametersΔρmax = 0.31 e Å3
2 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.26918 (10)0.32961 (3)0.61537 (4)0.02346 (14)
C10.3983 (4)0.43421 (10)0.69098 (13)0.0154 (3)
C20.2951 (3)0.51548 (10)0.63275 (12)0.0182 (3)0.50
H20.138 (6)0.514 (2)0.5570 (16)0.022*0.50
N10.2951 (3)0.51548 (10)0.63275 (12)0.0182 (3)0.50
C30.3971 (4)0.59762 (10)0.69191 (15)0.0214 (4)
H30.312 (4)0.6559 (8)0.6561 (15)0.026*
U11U22U33U12U13U23
Cl10.0279 (3)0.0201 (2)0.0216 (2)−0.00436 (16)0.00026 (17)−0.00631 (16)
C10.0142 (8)0.0163 (7)0.0160 (7)−0.0009 (6)0.0031 (6)−0.0027 (6)
C20.0158 (8)0.0235 (7)0.0149 (7)−0.0009 (6)0.0008 (6)0.0016 (6)
N10.0158 (8)0.0235 (7)0.0149 (7)−0.0009 (6)0.0008 (6)0.0016 (6)
C30.0184 (9)0.0185 (8)0.0269 (9)0.0015 (6)0.0012 (7)0.0073 (7)
Cl1—C11.7317 (18)C2—H20.943 (10)
C1—C21.346 (2)C3—C3i1.382 (3)
C1—C1i1.394 (3)C3—H30.951 (9)
C2—C31.359 (2)
C2—C1—C1i120.97 (9)C3—C2—H2122.4 (18)
C2—C1—Cl1118.07 (12)C2—C3—C3i120.92 (9)
C1i—C1—Cl1120.96 (6)C2—C3—H3119.8 (10)
C1—C2—C3118.10 (14)C3i—C3—H3119.1 (10)
C1—C2—H2119.2 (18)
C1i—C1—C2—C30.5 (3)C1—C2—C3—C3i0.5 (3)
Cl1—C1—C2—C3−179.84 (12)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5-(4-Pyrid-yl)-1,3,4-thia-diazole-2(3H)-thione.

Authors:  Xu-Feng Liu; Xing-Hai Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-18
  2 in total

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