Literature DB >> 22065416

2,2'-[1,5-Bis(4-amino-phen-yl)-1,5-dihydro-benzo[1,2-d;4,5-d']diimidazole-2,6-di-yl]diphenol.

Anita Blagus, Branko Kaitner.   

Abstract

The title mol-ecule, C(32)H(24)N(6)O(2), has a crystallographic inversion centre in the middle of the benzodiimidazole core. It exists as the enol-imine tautomeric form and exhibits a strong intra-molecular O-H⋯N hydrogen bond. The dihedral angles between the planes of the 2-hy-droxy-phenyl and 4-amino-phenyl substituents and the plane of the benzodiimidazole unit [12.69 (8) and 84.71 (8)°, respectively] differ significantly due to steric reasons. In the crystal, mol-ecules are linked by C-H⋯π inter-actions, forming a two-dimensional network.

Entities:  

Year:  2011        PMID: 22065416      PMCID: PMC3201269          DOI: 10.1107/S1600536811036737

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Benzodiimidazole and its derivatives are capable of adopting various coordination modes as well as forming multiple hydrogen bonds, see: Aakeröy et al. (2001 ▶); Holman et al. (2001 ▶). For the structures of benzodiimidazole derivatives with aromatic substituents, see: Boydston et al. (2006 ▶, 2007 ▶); Lin et al. (2004 ▶). For their pharmacological applications, see: Ansari & Lal (2009 ▶); Demirayak et al. (2011 ▶); Schulz & Skibo (2000 ▶). For applications of benzodiimidazole derivatives as ligands in coordination chemistry, see: Jiang et al. (2008 ▶). Some of their metal complexes have the property of metal-to-ligand charge-transfer excited states, see: Wang et al. (2011 ▶); Ohno et al. (1992 ▶).

Experimental

Crystal data

C32H24N6O2 M = 524.57 Monoclinic, a = 6.5181 (3) Å b = 13.3206 (7) Å c = 14.3081 (7) Å β = 91.680 (4)° V = 1241.77 (11) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.3 × 0.1 × 0.1 mm

Data collection

Oxford Diffraction Xcalibur CCD diffractometer 15503 measured reflections 2702 independent reflections 1605 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.123 S = 1.02 2702 reflections 190 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2003 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2003 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶), PARST97 (Nardelli, 1995 ▶) and Mercury (Macrae et al., 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811036737/kp2351sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036737/kp2351Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C32H24N6O2F(000) = 548
Mr = 524.57Dx = 1.403 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71069 Å
Hall symbol: -P 2ybcCell parameters from 2702 reflections
a = 6.5181 (3) Åθ = 4–27°
b = 13.3206 (7) ŵ = 0.09 mm1
c = 14.3081 (7) ÅT = 298 K
β = 91.680 (4)°Prism, brown
V = 1241.77 (11) Å30.3 × 0.1 × 0.1 mm
Z = 2
Oxford Diffraction Xcalibur CCD diffractometer1605 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.052
graphiteθmax = 27.0°, θmin = 3.7°
ω scansh = −8→8
15503 measured reflectionsk = −16→17
2702 independent reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0516P)2 + 0.1714P] where P = (Fo2 + 2Fc2)/3
2702 reflections(Δ/σ)max = 0.001
190 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.6794 (3)0.55326 (12)0.29326 (12)0.0681 (5)
H1−0.549 (4)0.5627 (18)0.3187 (17)0.082*
N1−0.2776 (2)0.35831 (11)0.44335 (11)0.0445 (4)
N2−0.3419 (2)0.51109 (12)0.38381 (11)0.0482 (4)
N3−0.3167 (4)−0.02530 (16)0.60297 (17)0.0715 (6)
H3A−0.295 (4)−0.077 (2)0.5640 (19)0.086*
H3B−0.424 (4)−0.0300 (19)0.6421 (19)0.086*
C1−0.7197 (3)0.45382 (16)0.29194 (14)0.0492 (5)
C2−0.5877 (3)0.38185 (15)0.33432 (13)0.0446 (5)
C3−0.6341 (3)0.28103 (16)0.31968 (15)0.0534 (6)
H3−0.54610.23250.34480.064*
C4−0.8066 (3)0.25088 (17)0.26907 (15)0.0593 (6)
H4−0.83270.18300.25930.071*
C5−0.9399 (3)0.32224 (19)0.23309 (16)0.0618 (6)
H5−1.05910.30240.20090.074*
C6−0.8976 (3)0.42242 (18)0.24457 (15)0.0582 (6)
H6−0.98910.47000.22030.070*
C7−0.4052 (3)0.41599 (15)0.38676 (13)0.0449 (5)
C9−0.1660 (3)0.51705 (14)0.44101 (13)0.0444 (5)
C10−0.1229 (3)0.42139 (14)0.47848 (14)0.0438 (5)
C110.0420 (3)0.40088 (14)0.53848 (14)0.0463 (5)
H110.06760.33730.56300.056*
C12−0.3013 (3)0.25779 (13)0.47880 (13)0.0410 (5)
C13−0.4253 (3)0.24106 (15)0.55365 (14)0.0481 (5)
H13−0.50270.29320.57770.058*
C14−0.4337 (3)0.14674 (16)0.59246 (15)0.0552 (6)
H14−0.51820.13580.64270.066*
C15−0.3202 (3)0.06807 (15)0.55872 (15)0.0502 (5)
C16−0.2049 (3)0.08554 (16)0.48043 (17)0.0604 (6)
H16−0.13490.03260.45350.072*
C17−0.1923 (3)0.17967 (16)0.44203 (16)0.0560 (6)
H17−0.10990.19060.39100.067*
U11U22U33U12U13U23
O10.0738 (11)0.0511 (10)0.0777 (12)0.0089 (8)−0.0240 (9)−0.0015 (8)
N10.0454 (9)0.0404 (10)0.0473 (10)−0.0055 (7)−0.0058 (8)0.0064 (7)
N20.0500 (10)0.0449 (11)0.0492 (10)−0.0047 (8)−0.0061 (8)0.0068 (8)
N30.0841 (15)0.0528 (13)0.0764 (16)−0.0128 (11)−0.0182 (12)0.0168 (11)
C10.0499 (12)0.0538 (14)0.0438 (12)0.0053 (10)0.0007 (10)−0.0017 (10)
C20.0428 (11)0.0497 (13)0.0414 (11)−0.0026 (9)0.0003 (9)0.0031 (9)
C30.0566 (13)0.0503 (13)0.0527 (13)−0.0070 (10)−0.0088 (10)0.0101 (10)
C40.0654 (14)0.0585 (15)0.0534 (14)−0.0162 (12)−0.0074 (11)0.0032 (11)
C50.0514 (13)0.0803 (18)0.0532 (14)−0.0080 (12)−0.0085 (11)−0.0006 (12)
C60.0496 (12)0.0732 (17)0.0513 (14)0.0106 (11)−0.0057 (10)−0.0036 (11)
C70.0471 (11)0.0445 (13)0.0431 (12)−0.0009 (9)−0.0004 (9)0.0047 (9)
C90.0456 (11)0.0450 (12)0.0424 (12)−0.0014 (9)−0.0015 (9)0.0056 (9)
C100.0441 (11)0.0420 (12)0.0451 (12)−0.0061 (9)0.0002 (9)0.0038 (9)
C110.0508 (11)0.0381 (12)0.0495 (12)−0.0032 (9)−0.0038 (9)0.0102 (9)
C120.0434 (10)0.0351 (11)0.0441 (12)−0.0027 (8)−0.0042 (9)0.0062 (9)
C130.0573 (12)0.0428 (12)0.0444 (12)−0.0050 (9)0.0048 (10)−0.0067 (9)
C140.0681 (14)0.0530 (14)0.0447 (13)−0.0141 (11)0.0073 (11)0.0008 (10)
C150.0524 (12)0.0429 (13)0.0544 (14)−0.0091 (10)−0.0129 (10)0.0077 (10)
C160.0605 (13)0.0451 (13)0.0756 (17)0.0090 (11)0.0030 (12)0.0007 (11)
C170.0539 (12)0.0515 (14)0.0634 (15)0.0031 (10)0.0168 (11)0.0080 (11)
O1—C11.350 (2)C5—C61.372 (3)
O1—H10.92 (3)C5—H50.9300
N1—C71.378 (2)C6—H60.9300
N1—C101.395 (2)C9—C11i1.386 (3)
N1—C121.442 (2)C9—C101.407 (3)
N2—C71.334 (2)C10—C111.383 (3)
N2—C91.391 (2)C11—C9i1.386 (3)
N3—C151.395 (3)C11—H110.9300
N3—H3A0.90 (3)C12—C171.373 (3)
N3—H3B0.91 (2)C12—C131.379 (3)
C1—C61.390 (3)C13—C141.375 (3)
C1—C21.413 (3)C13—H130.9300
C2—C31.391 (3)C14—C151.378 (3)
C2—C71.460 (3)C14—H140.9300
C3—C41.379 (3)C15—C161.387 (3)
C3—H30.9300C16—C171.372 (3)
C4—C51.377 (3)C16—H160.9300
C4—H40.9300C17—H170.9300
C1—O1—H1108.4 (15)N1—C7—C2126.65 (17)
C7—N1—C10107.06 (15)C11i—C9—N2129.41 (18)
C7—N1—C12130.96 (15)C11i—C9—C10121.67 (17)
C10—N1—C12121.10 (15)N2—C9—C10108.92 (17)
C7—N2—C9106.63 (16)C11—C10—N1130.18 (17)
C15—N3—H3A113.7 (17)C11—C10—C9123.91 (17)
C15—N3—H3B109.8 (16)N1—C10—C9105.91 (16)
H3A—N3—H3B118 (2)C10—C11—C9i114.41 (17)
O1—C1—C6117.47 (19)C10—C11—H11122.8
O1—C1—C2122.94 (19)C9i—C11—H11122.8
C6—C1—C2119.6 (2)C17—C12—C13119.79 (18)
C3—C2—C1117.61 (18)C17—C12—N1120.46 (17)
C3—C2—C7123.25 (18)C13—C12—N1119.65 (17)
C1—C2—C7119.06 (18)C14—C13—C12119.50 (19)
C4—C3—C2122.0 (2)C14—C13—H13120.3
C4—C3—H3119.0C12—C13—H13120.3
C2—C3—H3119.0C13—C14—C15121.7 (2)
C5—C4—C3119.4 (2)C13—C14—H14119.2
C5—C4—H4120.3C15—C14—H14119.2
C3—C4—H4120.3C14—C15—C16117.68 (19)
C6—C5—C4120.3 (2)C14—C15—N3121.4 (2)
C6—C5—H5119.9C16—C15—N3120.9 (2)
C4—C5—H5119.9C17—C16—C15121.1 (2)
C5—C6—C1120.9 (2)C17—C16—H16119.4
C5—C6—H6119.6C15—C16—H16119.4
C1—C6—H6119.6C16—C17—C12120.1 (2)
N2—C7—N1111.48 (16)C16—C17—H17120.0
N2—C7—C2121.87 (17)C12—C17—H17120.0
Cg is the centroid of the C1–C6 ring.
D—H···AD—HH···AD···AD—H···A
O1—H1···N20.921.762.582 (2)147
C14—H14···Cgii0.932.603.514 (2)167
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N20.921.762.582 (2)147
C14—H14⋯Cgi0.932.603.514 (2)167

Symmetry code: (i) .

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