Literature DB >> 22065415

trans-Diaqua-bis-(dl-valinato-κN,O)nickel(II).

Amel Messai, Rim Benali-Cherif, Erwann Jeanneau, Nourredine Benali-Cherif.   

Abstract

In the title complex, [Ni(C(5)H(9)NO(2))(2)(H(2)O)(2)], the Ni(II) atom, located on a centre of inversion, is trans-coordinated by two O atoms and two N atoms from d-bidentate valine and l-bidentate valine ligands and two water O atoms in an octa-hedral geometry. In the crystal, the discrete mononuclear units are linked into a three-dimensional network via O-H⋯O and N-H⋯O hydrogen bonds. C-H⋯O inter-actions are also observed.

Entities:  

Year:  2011        PMID: 22065415      PMCID: PMC3200705          DOI: 10.1107/S1600536811031072

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For amino ­acids as ligands, see: Loo et al. (2005 ▶); Patrick et al. (2003 ▶). For valine, see: Ooiwa et al. (1995 ▶). For related complexes, see: Menabue et al. (1998 ▶)

Experimental

Crystal data

[Ni(C5H9NO2)2(H2O)2] M = 325.01 Monoclinic, a = 24.8881 (2) Å b = 5.8701 (3) Å c = 10.0789 (2) Å β = 90.442 (3)° V = 1472.44 (8) Å3 Z = 4 Mo Kα radiation μ = 1.34 mm−1 T = 293 K 0.20 × 0.15 × 0.10 mm

Data collection

Nonius Mach3 KappaCCD diffractometer 2024 measured reflections 1960 independent reflections 1053 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.151 S = 1.03 1960 reflections 94 parameters 1 restraint H-atom parameters not refined Δρmax = 0.48 e Å−3 Δρmin = −1.26 e Å−3 Data collection: KappaCCD Server Software (Nonius, 1998 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811031072/ds2128sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811031072/ds2128Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C5H9NO2)2(H2O)2]F(000) = 688
Mr = 325.01Dx = 1.466 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1960 reflections
a = 24.8881 (2) Åθ = 3.3–29.1°
b = 5.8701 (3) ŵ = 1.34 mm1
c = 10.0789 (2) ÅT = 293 K
β = 90.442 (3)°Placket, blue
V = 1472.44 (8) Å30.20 × 0.15 × 0.10 mm
Z = 4
Nonius Mach3 KappaCCD diffractometer1053 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.023
graphiteθmax = 29.2°, θmin = 3.3°
φ and ω scansh = −31→16
2024 measured reflectionsk = −4→7
1960 independent reflectionsl = −13→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151H-atom parameters not refined
S = 1.03w = 1/[σ2(Fo2) + (0.1031P)2] where P = (Fo2 + 2Fc2)/3
1960 reflections(Δ/σ)max < 0.001
94 parametersΔρmax = 0.48 e Å3
1 restraintΔρmin = −1.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.25000.25000.50000.0306 (3)
O10.21580 (12)0.5058 (5)0.6033 (3)0.0482 (7)
O1W0.26506 (15)0.4700 (6)0.3410 (3)0.0706 (11)
H1W0.24660.49150.25880.106*
H2W0.29020.54730.38180.106*
O20.14621 (18)0.7348 (5)0.6067 (4)0.0693 (12)
N10.17065 (13)0.2015 (6)0.4376 (3)0.0363 (8)
H1N0.15160.08100.47220.044*
C10.16898 (19)0.5618 (7)0.5671 (4)0.0452 (10)
C20.13961 (16)0.4099 (7)0.4637 (4)0.0417 (9)
H20.13870.49620.38050.050*
C30.08064 (17)0.3674 (8)0.5024 (4)0.0482 (10)
H30.06320.51620.51150.058*
C40.0511 (2)0.2376 (9)0.3929 (6)0.0711 (17)
H4A0.01350.22900.41370.107*
H4B0.06560.08650.38610.107*
H4C0.05550.31570.31000.107*
C50.0749 (2)0.2437 (8)0.6330 (5)0.0662 (15)
H5A0.08990.09360.62550.099*
H5B0.03760.23250.65510.099*
H5C0.09360.32640.70130.099*
U11U22U33U12U13U23
Ni10.0303 (4)0.0399 (4)0.0215 (3)−0.0096 (3)−0.0074 (2)0.0002 (3)
O10.0422 (16)0.0578 (18)0.0444 (15)−0.0082 (14)−0.0154 (13)−0.0173 (14)
O1W0.095 (3)0.079 (2)0.0377 (15)−0.053 (2)−0.0269 (16)0.0222 (16)
O20.080 (3)0.0384 (18)0.089 (3)0.0107 (16)−0.022 (2)−0.0196 (16)
N10.0307 (17)0.0426 (19)0.0356 (16)−0.0079 (13)−0.0048 (13)−0.0087 (13)
C10.058 (3)0.037 (2)0.041 (2)−0.010 (2)−0.0073 (19)−0.0010 (17)
C20.041 (2)0.045 (2)0.0385 (19)−0.0071 (18)−0.0112 (17)0.0018 (17)
C30.037 (2)0.045 (2)0.063 (3)0.0036 (18)−0.004 (2)−0.006 (2)
C40.044 (3)0.099 (5)0.070 (4)−0.015 (3)−0.018 (3)−0.005 (3)
C50.066 (3)0.074 (4)0.058 (3)−0.013 (2)0.018 (3)−0.013 (2)
Ni1—O12.019 (3)C1—C21.550 (5)
Ni1—O1i2.019 (3)C2—C31.542 (6)
Ni1—N12.087 (3)C2—H20.9800
Ni1—N1i2.087 (3)C3—C51.511 (6)
Ni1—O1Wi2.095 (3)C3—C41.525 (6)
Ni1—O1W2.095 (3)C3—H30.9800
O1—C11.262 (5)C4—H4A0.9600
O1W—H1W0.9519C4—H4B0.9600
O1W—H2W0.8736C4—H4C0.9600
O2—C11.231 (5)C5—H5A0.9600
N1—C21.472 (5)C5—H5B0.9600
N1—H1N0.9209C5—H5C0.9600
O1—Ni1—O1i180.00 (13)N1—C2—C3114.4 (3)
O1—Ni1—N181.68 (11)N1—C2—C1110.7 (3)
O1i—Ni1—N198.32 (11)C3—C2—C1111.6 (4)
O1—Ni1—N1i98.32 (11)N1—C2—H2106.6
O1i—Ni1—N1i81.68 (11)C3—C2—H2106.6
N1—Ni1—N1i180.00 (6)C1—C2—H2106.6
O1—Ni1—O1Wi89.15 (15)C5—C3—C4110.0 (4)
O1i—Ni1—O1Wi90.85 (15)C5—C3—C2113.2 (4)
N1—Ni1—O1Wi88.38 (13)C4—C3—C2110.7 (4)
N1i—Ni1—O1Wi91.62 (13)C5—C3—H3107.6
O1—Ni1—O1W90.85 (15)C4—C3—H3107.6
O1i—Ni1—O1W89.15 (15)C2—C3—H3107.6
N1—Ni1—O1W91.62 (13)C3—C4—H4A109.5
N1i—Ni1—O1W88.38 (13)C3—C4—H4B109.5
O1Wi—Ni1—O1W180.0H4A—C4—H4B109.5
C1—O1—Ni1115.9 (2)C3—C4—H4C109.5
Ni1—O1W—H1W131.2H4A—C4—H4C109.5
Ni1—O1W—H2W95.2H4B—C4—H4C109.5
H1W—O1W—H2W132.9C3—C5—H5A109.5
C2—N1—Ni1109.2 (2)C3—C5—H5B109.5
C2—N1—H1N107.4H5A—C5—H5B109.5
Ni1—N1—H1N118.6C3—C5—H5C109.5
O2—C1—O1123.2 (4)H5A—C5—H5C109.5
O2—C1—C2118.5 (4)H5B—C5—H5C109.5
O1—C1—C2118.3 (4)
O1i—Ni1—O1—C1136 (100)Ni1—O1—C1—C28.8 (5)
N1—Ni1—O1—C1−15.6 (3)Ni1—N1—C2—C3−145.7 (3)
N1i—Ni1—O1—C1164.4 (3)Ni1—N1—C2—C1−18.6 (4)
O1Wi—Ni1—O1—C1−104.1 (3)O2—C1—C2—N1−174.8 (4)
O1W—Ni1—O1—C175.9 (3)O1—C1—C2—N17.4 (5)
O1—Ni1—N1—C218.4 (2)O2—C1—C2—C3−46.2 (5)
O1i—Ni1—N1—C2−161.6 (2)O1—C1—C2—C3136.0 (4)
N1i—Ni1—N1—C2−115 (70)N1—C2—C3—C565.0 (5)
O1Wi—Ni1—N1—C2107.8 (3)C1—C2—C3—C5−61.6 (5)
O1W—Ni1—N1—C2−72.2 (3)N1—C2—C3—C4−59.0 (5)
Ni1—O1—C1—O2−168.9 (4)C1—C2—C3—C4174.4 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O2ii0.922.45 (3)3.286 (5)152
O1W—H1W···O1iii0.951.742.684 (4)172
O1W—H2W···O2iv0.872.042.856 (5)155
C5—H5A···O2ii0.962.533.483 (6)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O2i0.922.45 (3)3.286 (5)152
O1W—H1W⋯O1ii0.951.742.684 (4)172
O1W—H2W⋯O2iii0.872.042.856 (5)155
C5—H5A⋯O2i0.962.533.483 (6)170

Symmetry codes: (i) ; (ii) ; (iii) .

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