Literature DB >> 22065411

(2,6-Difluoro-phen-yl)(4-methyl-piperidin-1-yl)methanone.

Mohammad T M Al-Dajani, Hassan H Adballah, Nornisah Mohamed, Madhukar Hemamalini, Hoong-Kun Fun.   

Abstract

In the title compound, C(13)H(15)F(2)NO, the piperidine ring adopts a chair conformation. The dihedral angle between the least-squares plane of the piperidine ring and the benzene ring is 48.75 (7)°. In the crystal structure, the mol-ecules are connected via C-H⋯O hydrogen bonds, forming a zigzag chain along the b axis.

Entities:  

Year:  2011        PMID: 22065411      PMCID: PMC3200831          DOI: 10.1107/S1600536811033848

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological applications of piperidine derivatives, see: Waelbroeck et al. (1992 ▶); El Hadri et al. (1995 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C13H15F2NO M = 239.26 Monoclinic, a = 9.1807 (7) Å b = 10.9910 (8) Å c = 13.2477 (8) Å β = 115.582 (4)° V = 1205.71 (15) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.43 × 0.38 × 0.19 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.956, T max = 0.981 11030 measured reflections 3513 independent reflections 2617 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.136 S = 1.06 3513 reflections 155 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811033848/is2763sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033848/is2763Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811033848/is2763Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H15F2NOF(000) = 504
Mr = 239.26Dx = 1.318 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4002 reflections
a = 9.1807 (7) Åθ = 2.5–29.6°
b = 10.9910 (8) ŵ = 0.10 mm1
c = 13.2477 (8) ÅT = 296 K
β = 115.582 (4)°Block, colourless
V = 1205.71 (15) Å30.43 × 0.38 × 0.19 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer3513 independent reflections
Radiation source: fine-focus sealed tube2617 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scansθmax = 30.1°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→12
Tmin = 0.956, Tmax = 0.981k = −13→15
11030 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0678P)2 + 0.1308P] where P = (Fo2 + 2Fc2)/3
3513 reflections(Δ/σ)max = 0.001
155 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.26788 (12)0.67786 (9)0.26565 (7)0.0733 (3)
F20.16103 (13)0.89859 (9)0.52606 (7)0.0835 (3)
O10.23349 (12)0.59626 (9)0.48443 (8)0.0697 (3)
N10.46198 (12)0.70862 (9)0.55150 (9)0.0528 (3)
C10.19420 (13)0.77289 (11)0.28922 (9)0.0476 (3)
C20.10112 (15)0.85157 (14)0.20507 (10)0.0600 (4)
H2A0.08960.84070.13240.072*
C30.02604 (15)0.94608 (15)0.23065 (12)0.0638 (4)
H3A−0.03840.99920.17440.077*
C40.04459 (16)0.96375 (14)0.33859 (12)0.0625 (4)
H4A−0.00581.02830.35620.075*
C50.13981 (15)0.88297 (12)0.41937 (10)0.0517 (3)
C60.21693 (12)0.78571 (10)0.39862 (8)0.0413 (2)
C70.30603 (14)0.68901 (10)0.48395 (9)0.0455 (3)
C80.54606 (14)0.82462 (12)0.56603 (10)0.0526 (3)
H8A0.47460.88390.51390.063*
H8B0.63910.81450.55020.063*
C90.60040 (14)0.86998 (11)0.68488 (10)0.0504 (3)
H9A0.50640.88710.69810.060*
H9B0.66040.94510.69460.060*
C100.70612 (14)0.77668 (11)0.76970 (10)0.0503 (3)
H10A0.80250.76360.75700.060*
C110.61572 (15)0.65643 (11)0.74973 (11)0.0563 (3)
H11A0.68640.59530.79970.068*
H11B0.52380.66600.76700.068*
C120.55722 (17)0.61347 (11)0.62987 (11)0.0631 (4)
H12A0.64930.59250.61560.076*
H12B0.49150.54110.61850.076*
C130.7612 (2)0.82022 (17)0.88950 (12)0.0781 (5)
H13A0.82410.89310.90090.117*
H13B0.82580.75830.94020.117*
H13C0.66860.83680.90310.117*
U11U22U33U12U13U23
F10.0883 (6)0.0761 (6)0.0598 (5)0.0042 (5)0.0360 (4)−0.0189 (4)
F20.1137 (8)0.0920 (7)0.0538 (5)0.0326 (6)0.0448 (5)0.0010 (4)
O10.0689 (6)0.0515 (5)0.0607 (6)−0.0175 (4)0.0017 (4)0.0058 (4)
N10.0477 (5)0.0406 (5)0.0503 (5)0.0007 (4)0.0025 (4)0.0013 (4)
C10.0445 (5)0.0567 (7)0.0384 (5)−0.0074 (5)0.0147 (4)−0.0065 (4)
C20.0545 (7)0.0820 (9)0.0331 (5)−0.0143 (6)0.0091 (5)0.0061 (5)
C30.0429 (6)0.0752 (9)0.0575 (7)0.0000 (6)0.0069 (5)0.0263 (7)
C40.0511 (6)0.0641 (8)0.0702 (8)0.0153 (6)0.0243 (6)0.0146 (6)
C50.0520 (6)0.0601 (7)0.0439 (6)0.0077 (5)0.0214 (5)0.0032 (5)
C60.0380 (5)0.0456 (5)0.0350 (5)−0.0021 (4)0.0107 (4)−0.0002 (4)
C70.0495 (6)0.0409 (5)0.0364 (5)−0.0022 (4)0.0093 (4)−0.0035 (4)
C80.0447 (5)0.0528 (7)0.0501 (6)−0.0060 (5)0.0110 (5)0.0037 (5)
C90.0463 (6)0.0418 (6)0.0578 (7)−0.0074 (5)0.0175 (5)−0.0042 (5)
C100.0443 (5)0.0553 (7)0.0446 (6)−0.0016 (5)0.0130 (4)−0.0039 (5)
C110.0523 (6)0.0473 (6)0.0547 (7)0.0042 (5)0.0094 (5)0.0074 (5)
C120.0613 (7)0.0417 (6)0.0580 (7)0.0084 (5)−0.0009 (6)−0.0013 (5)
C130.0974 (12)0.0762 (10)0.0507 (8)−0.0106 (9)0.0224 (8)−0.0110 (7)
F1—C11.3522 (15)C8—H8A0.9700
F2—C51.3518 (14)C8—H8B0.9700
O1—C71.2192 (15)C9—C101.5213 (17)
N1—C71.3381 (14)C9—H9A0.9700
N1—C81.4595 (16)C9—H9B0.9700
N1—C121.4671 (15)C10—C131.5200 (18)
C1—C21.3777 (18)C10—C111.5218 (18)
C1—C61.3795 (15)C10—H10A0.9800
C2—C31.368 (2)C11—C121.5153 (19)
C2—H2A0.9300C11—H11A0.9700
C3—C41.379 (2)C11—H11B0.9700
C3—H3A0.9300C12—H12A0.9700
C4—C51.3747 (17)C12—H12B0.9700
C4—H4A0.9300C13—H13A0.9600
C5—C61.3739 (17)C13—H13B0.9600
C6—C71.5094 (15)C13—H13C0.9600
C8—C91.5159 (17)
C7—N1—C8125.53 (10)C8—C9—C10111.36 (10)
C7—N1—C12119.81 (10)C8—C9—H9A109.4
C8—N1—C12114.19 (9)C10—C9—H9A109.4
F1—C1—C2119.69 (11)C8—C9—H9B109.4
F1—C1—C6117.24 (11)C10—C9—H9B109.4
C2—C1—C6123.06 (12)H9A—C9—H9B108.0
C3—C2—C1118.63 (12)C13—C10—C9112.18 (12)
C3—C2—H2A120.7C13—C10—C11111.45 (12)
C1—C2—H2A120.7C9—C10—C11109.32 (9)
C2—C3—C4120.94 (12)C13—C10—H10A107.9
C2—C3—H3A119.5C9—C10—H10A107.9
C4—C3—H3A119.5C11—C10—H10A107.9
C5—C4—C3117.94 (13)C12—C11—C10111.88 (12)
C5—C4—H4A121.0C12—C11—H11A109.2
C3—C4—H4A121.0C10—C11—H11A109.2
F2—C5—C6117.00 (10)C12—C11—H11B109.2
F2—C5—C4119.21 (12)C10—C11—H11B109.2
C6—C5—C4123.79 (12)H11A—C11—H11B107.9
C5—C6—C1115.62 (10)N1—C12—C11110.65 (10)
C5—C6—C7123.88 (10)N1—C12—H12A109.5
C1—C6—C7120.14 (10)C11—C12—H12A109.5
O1—C7—N1124.08 (11)N1—C12—H12B109.5
O1—C7—C6118.17 (10)C11—C12—H12B109.5
N1—C7—C6117.69 (10)H12A—C12—H12B108.1
N1—C8—C9110.03 (10)C10—C13—H13A109.5
N1—C8—H8A109.7C10—C13—H13B109.5
C9—C8—H8A109.7H13A—C13—H13B109.5
N1—C8—H8B109.7C10—C13—H13C109.5
C9—C8—H8B109.7H13A—C13—H13C109.5
H8A—C8—H8B108.2H13B—C13—H13C109.5
F1—C1—C2—C3179.14 (11)C8—N1—C7—C613.13 (19)
C6—C1—C2—C3−0.79 (19)C12—N1—C7—C6−175.26 (11)
C1—C2—C3—C40.9 (2)C5—C6—C7—O194.43 (15)
C2—C3—C4—C5−0.5 (2)C1—C6—C7—O1−78.49 (15)
C3—C4—C5—F2179.55 (13)C5—C6—C7—N1−88.19 (15)
C3—C4—C5—C6−0.2 (2)C1—C6—C7—N198.90 (13)
F2—C5—C6—C1−179.40 (11)C7—N1—C8—C9115.22 (13)
C4—C5—C6—C10.35 (19)C12—N1—C8—C9−56.81 (15)
F2—C5—C6—C77.40 (18)N1—C8—C9—C1056.43 (13)
C4—C5—C6—C7−172.86 (12)C8—C9—C10—C13−179.72 (12)
F1—C1—C6—C5−179.77 (10)C8—C9—C10—C11−55.56 (14)
C2—C1—C6—C50.16 (17)C13—C10—C11—C12178.83 (12)
F1—C1—C6—C7−6.30 (16)C9—C10—C11—C1254.25 (14)
C2—C1—C6—C7173.64 (11)C7—N1—C12—C11−116.98 (13)
C8—N1—C7—O1−169.65 (13)C8—N1—C12—C1155.54 (17)
C12—N1—C7—O12.0 (2)C10—C11—C12—N1−53.71 (16)
D—H···AD—HH···AD···AD—H···A
C3—H3A···O1i0.932.353.2646 (18)168.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯O1i0.932.353.2646 (18)168

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Binding properties of nine 4-diphenyl-acetoxy-N-methyl-piperidine (4-DAMP) analogues to M1, M2, M3 and putative M4 muscarinic receptor subtypes.

Authors:  M Waelbroeck; J Camus; M Tastenoy; J Christophe
Journal:  Br J Pharmacol       Date:  1992-01       Impact factor: 8.739

3.  Syntheses, activity and modeling studies of 3- and 4-(sulfo- and sulfonamidoalkyl)pyridine and piperidine-2-carboxylic acid derivatives as analogs of NMDA receptor antagonists.

Authors:  A el Hadri; P Maldivi; G Leclerc; J P Rocher
Journal:  Bioorg Med Chem       Date:  1995-09       Impact factor: 3.641

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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