Literature DB >> 22065129

1,5-Dichloro-3(2,7),7(2,7)-dinaphthal-ena-2,4,6,8-tetra-oxa-1(2,6),5(2,6)-di(1,3,5-triazina)octa-phane.

Qiu-Guang Sang1, Jing-Kui Yang.   

Abstract

In the macrocyclic title compound, C(26)H(12)Cl(2)N(6)O(4), an O-atom-bridged calix[2]naphthalene-[2]triazine synthesized using a one-pot approach from naphthalene-2,7-diol and cyanuric chloride, the two isolated naphthalene planes and the two triazine-2,6-di-oxy planes adopt a 1,3-alternate configuration, with a dihedral angle of 84.10 (8)° between the naphthalene rings and a dihedral angle of 39.02 (14)° between the triazine rings. In the crystal, weak inter-molecular π-π stacking inter-actions are found between face-to-face naphthalene rings [centroid-centroid distance = 3.662 (7) Å].

Entities:  

Year:  2011        PMID: 22065129      PMCID: PMC3200940          DOI: 10.1107/S160053681103460X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and applications of oxocalixarenes, see König & Fonseca (2000 ▶). For background on compounds similar to the title compound and other derivatives from cyanuric chloride reactions, see: Wang & Yang (2004 ▶); Hou et al. (2007 ▶); Chen et al. (2010 ▶); Zhu et al. (2010 ▶); Katz et al. (2009 ▶); Katz & Tschaen (2010 ▶); Hu & Chen (2011 ▶).

Experimental

Crystal data

C26H12Cl2N6O4 M = 543.32 Monoclinic, a = 15.514 (3) Å b = 7.967 (3) Å c = 18.527 (5) Å β = 90.60 (2)° V = 2289.8 (11) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 295 K 0.5 × 0.4 × 0.3 mm

Data collection

Bruker P4 diffractometer 5492 measured reflections 4266 independent reflections 2582 reflections with I > 2σ(I) R int = 0.034 3 standard reflections every 97 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.123 S = 1.03 4266 reflections 343 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.39 e Å−3 Data collection: XSCANS (Bruker, 1997 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681103460X/zs2134sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681103460X/zs2134Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681103460X/zs2134Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H12Cl2N6O4F(000) = 1104
Mr = 543.32Dx = 1.576 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 49 reflections
a = 15.514 (3) Åθ = 4.9–12.5°
b = 7.967 (3) ŵ = 0.33 mm1
c = 18.527 (5) ÅT = 295 K
β = 90.60 (2)°Prism, colorless
V = 2289.8 (11) Å30.5 × 0.4 × 0.3 mm
Z = 4
Bruker P4 diffractometerRint = 0.034
Radiation source: fine-focus sealed tubeθmax = 25.5°, θmin = 2.2°
graphiteh = −1→18
ω scansk = −9→1
5492 measured reflectionsl = −22→22
4266 independent reflections3 standard reflections every 97 reflections
2582 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.001P)2 + 2.80P] where P = (Fo2 + 2Fc2)/3
4266 reflections(Δ/σ)max = 0.001
343 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.65337 (5)0.52005 (17)−0.13220 (4)0.1212 (4)
Cl20.65653 (5)0.52943 (15)0.69093 (4)0.1076 (3)
O10.82098 (10)0.4316 (3)0.08191 (8)0.0752 (6)
O20.53757 (10)0.2524 (3)0.07781 (8)0.0778 (6)
O30.53255 (10)0.2821 (3)0.47773 (8)0.0755 (6)
O40.81654 (11)0.4587 (3)0.47411 (8)0.0830 (7)
N10.68020 (12)0.3369 (3)0.08891 (9)0.0595 (6)
N20.59479 (13)0.3744 (4)−0.01723 (10)0.0766 (8)
N30.73930 (13)0.4742 (3)−0.01449 (10)0.0691 (7)
N40.67511 (12)0.3658 (3)0.46679 (9)0.0602 (6)
N50.73800 (13)0.4956 (3)0.57144 (10)0.0689 (7)
N60.59290 (13)0.3986 (3)0.57365 (10)0.0742 (8)
C10.74257 (15)0.4122 (4)0.05242 (11)0.0617 (8)
C20.60781 (15)0.3243 (4)0.05096 (12)0.0633 (8)
C30.66290 (17)0.4477 (4)−0.04477 (12)0.0747 (10)
C40.52151 (14)0.1967 (4)0.14883 (12)0.0627 (8)
C50.55811 (14)0.2556 (4)0.21090 (11)0.0591 (8)
H50.60420.33010.20920.071*
C60.52496 (13)0.2016 (3)0.27861 (11)0.0538 (7)
C70.55644 (14)0.2663 (4)0.34550 (11)0.0585 (7)
H70.60250.34100.34670.070*
C80.51762 (14)0.2166 (4)0.40796 (12)0.0593 (7)
C90.44956 (16)0.1016 (4)0.40900 (13)0.0718 (9)
H90.42510.06990.45250.086*
C100.41959 (17)0.0367 (4)0.34581 (14)0.0742 (9)
H100.3747−0.04070.34640.089*
C110.45556 (15)0.0848 (4)0.27896 (13)0.0596 (7)
C120.42190 (16)0.0250 (4)0.21229 (13)0.0707 (9)
H120.3773−0.05310.21220.085*
C130.45381 (16)0.0801 (4)0.14867 (13)0.0680 (8)
H130.43090.04090.10520.082*
C140.60391 (15)0.3501 (4)0.50520 (12)0.0617 (8)
C150.73893 (15)0.4367 (4)0.50414 (12)0.0628 (8)
C160.66226 (16)0.4676 (4)0.60166 (12)0.0711 (9)
C170.83673 (14)0.3801 (4)0.40794 (12)0.0649 (8)
C180.80149 (14)0.4335 (4)0.34460 (12)0.0619 (8)
H180.75730.51240.34420.074*
C190.83321 (13)0.3669 (3)0.27905 (11)0.0526 (7)
C200.80400 (14)0.4258 (4)0.21136 (11)0.0600 (8)
H200.76040.50560.20830.072*
C210.84044 (14)0.3642 (4)0.15079 (11)0.0598 (8)
C220.90542 (15)0.2455 (4)0.15168 (12)0.0688 (9)
H220.92890.20730.10870.083*
C230.93466 (15)0.1852 (4)0.21650 (13)0.0694 (9)
H230.97760.10380.21760.083*
C240.89995 (14)0.2457 (4)0.28203 (12)0.0568 (7)
C250.93288 (16)0.1943 (4)0.35013 (13)0.0692 (8)
H250.97600.11330.35240.083*
C260.90224 (15)0.2621 (4)0.41220 (13)0.0709 (9)
H260.92490.22980.45670.085*
U11U22U33U12U13U23
Cl10.0746 (4)0.2384 (12)0.0506 (3)0.0012 (6)−0.0046 (3)0.0454 (5)
Cl20.0756 (4)0.2001 (10)0.0471 (3)0.0050 (6)0.0059 (3)−0.0316 (5)
O10.0544 (9)0.1312 (17)0.0398 (8)−0.0206 (11)−0.0037 (7)0.0095 (10)
O20.0486 (8)0.1420 (18)0.0427 (8)−0.0147 (11)−0.0059 (7)0.0066 (11)
O30.0551 (9)0.1297 (17)0.0419 (8)−0.0138 (11)0.0075 (7)−0.0027 (10)
O40.0607 (10)0.1476 (19)0.0408 (8)−0.0245 (12)0.0062 (7)−0.0147 (11)
N10.0488 (10)0.0919 (17)0.0378 (9)−0.0054 (11)−0.0024 (8)0.0008 (11)
N20.0522 (11)0.140 (2)0.0375 (10)0.0013 (14)−0.0029 (8)0.0050 (13)
N30.0570 (11)0.1115 (19)0.0390 (9)0.0026 (13)0.0015 (9)0.0053 (12)
N40.0500 (10)0.0920 (17)0.0386 (9)−0.0036 (11)0.0027 (8)0.0032 (11)
N50.0604 (11)0.1070 (18)0.0392 (9)0.0003 (13)0.0023 (9)−0.0046 (12)
N60.0567 (11)0.125 (2)0.0406 (10)0.0021 (14)0.0079 (9)−0.0046 (13)
C10.0560 (13)0.093 (2)0.0364 (11)−0.0030 (14)0.0004 (10)−0.0035 (13)
C20.0502 (12)0.098 (2)0.0416 (12)0.0017 (14)0.0008 (10)−0.0032 (14)
C30.0634 (14)0.124 (3)0.0367 (11)0.0123 (17)0.0017 (11)0.0055 (15)
C40.0411 (11)0.102 (2)0.0450 (12)0.0043 (14)0.0000 (10)0.0044 (14)
C50.0420 (11)0.089 (2)0.0466 (12)−0.0048 (13)−0.0003 (10)0.0008 (13)
C60.0417 (11)0.0732 (18)0.0465 (12)0.0027 (12)0.0019 (9)0.0015 (12)
C70.0444 (11)0.085 (2)0.0456 (12)−0.0032 (13)0.0034 (10)0.0006 (13)
C80.0500 (12)0.0840 (19)0.0439 (12)0.0008 (14)0.0034 (10)0.0007 (13)
C90.0640 (15)0.100 (2)0.0515 (13)−0.0133 (16)0.0095 (12)0.0104 (15)
C100.0652 (15)0.094 (2)0.0636 (15)−0.0169 (16)0.0032 (13)0.0072 (16)
C110.0544 (13)0.0697 (18)0.0548 (13)−0.0017 (14)0.0010 (11)0.0009 (13)
C120.0581 (14)0.088 (2)0.0662 (15)−0.0133 (15)−0.0057 (12)0.0018 (16)
C130.0553 (13)0.096 (2)0.0526 (13)0.0009 (15)−0.0088 (11)−0.0085 (15)
C140.0547 (13)0.089 (2)0.0414 (12)0.0026 (14)0.0035 (10)0.0065 (13)
C150.0557 (13)0.093 (2)0.0398 (12)−0.0008 (15)0.0043 (10)0.0062 (13)
C160.0646 (15)0.111 (2)0.0381 (12)0.0114 (17)0.0021 (11)−0.0040 (14)
C170.0473 (12)0.108 (2)0.0394 (11)−0.0155 (15)0.0051 (10)−0.0034 (14)
C180.0441 (12)0.094 (2)0.0478 (12)−0.0017 (14)0.0026 (10)−0.0023 (14)
C190.0395 (10)0.0774 (18)0.0410 (11)−0.0060 (12)0.0017 (9)0.0009 (12)
C200.0449 (12)0.090 (2)0.0449 (12)−0.0001 (13)−0.0035 (10)0.0028 (13)
C210.0462 (12)0.095 (2)0.0385 (11)−0.0101 (14)−0.0035 (9)0.0041 (13)
C220.0496 (12)0.109 (2)0.0479 (13)−0.0041 (15)0.0072 (10)−0.0134 (15)
C230.0493 (13)0.092 (2)0.0670 (15)0.0088 (15)0.0016 (12)−0.0102 (16)
C240.0423 (11)0.0809 (19)0.0471 (12)−0.0031 (13)0.0003 (10)0.0034 (13)
C250.0530 (13)0.094 (2)0.0600 (14)0.0030 (15)−0.0077 (11)0.0080 (15)
C260.0535 (13)0.111 (2)0.0477 (13)−0.0140 (16)−0.0073 (11)0.0144 (15)
Cl1—C31.724 (2)C7—C81.369 (3)
Cl2—C161.729 (2)C7—H70.9300
O1—C11.337 (3)C8—C91.398 (4)
O1—C211.414 (3)C9—C101.357 (4)
O2—C21.332 (3)C9—H90.9300
O2—C41.413 (3)C10—C111.417 (3)
O3—C141.329 (3)C10—H100.9300
O3—C81.411 (3)C11—C121.418 (3)
O4—C151.343 (3)C12—C131.356 (4)
O4—C171.414 (3)C12—H120.9300
N1—C21.323 (3)C13—H130.9300
N1—C11.329 (3)C17—C181.358 (3)
N2—C31.315 (3)C17—C261.386 (4)
N2—C21.338 (3)C18—C191.418 (3)
N3—C31.323 (3)C18—H180.9300
N3—C11.335 (3)C19—C201.409 (3)
N4—C141.326 (3)C19—C241.416 (3)
N4—C151.328 (3)C20—C211.354 (3)
N5—C161.326 (3)C20—H200.9300
N5—C151.333 (3)C21—C221.382 (4)
N6—C161.311 (3)C22—C231.367 (3)
N6—C141.338 (3)C22—H220.9300
C4—C51.361 (3)C23—C241.418 (3)
C4—C131.402 (4)C23—H230.9300
C5—C61.427 (3)C24—C251.417 (3)
C5—H50.9300C25—C261.361 (4)
C6—C111.424 (3)C25—H250.9300
C6—C71.424 (3)C26—H260.9300
C1—O1—C21120.63 (19)C13—C12—H12119.6
C2—O2—C4129.45 (18)C11—C12—H12119.6
C14—O3—C8129.02 (18)C12—C13—C4119.5 (2)
C15—O4—C17120.6 (2)C12—C13—H13120.2
C2—N1—C1112.49 (19)C4—C13—H13120.2
C3—N2—C2112.6 (2)N4—C14—O3121.9 (2)
C3—N3—C1111.1 (2)N4—C14—N6126.6 (2)
C14—N4—C15112.40 (19)O3—C14—N6111.5 (2)
C16—N5—C15110.8 (2)N4—C15—N5128.5 (2)
C16—N6—C14112.6 (2)N4—C15—O4120.4 (2)
N1—C1—N3128.2 (2)N5—C15—O4111.1 (2)
N1—C1—O1120.5 (2)N6—C16—N5129.1 (2)
N3—C1—O1111.2 (2)N6—C16—Cl2116.61 (18)
N1—C2—O2121.8 (2)N5—C16—Cl2114.27 (19)
N1—C2—N2126.7 (2)C18—C17—C26123.4 (2)
O2—C2—N2111.4 (2)C18—C17—O4121.3 (3)
N2—C3—N3128.8 (2)C26—C17—O4114.8 (2)
N2—C3—Cl1116.84 (19)C17—C18—C19118.9 (2)
N3—C3—Cl1114.4 (2)C17—C18—H18120.6
C5—C4—C13122.4 (2)C19—C18—H18120.6
C5—C4—O2127.1 (2)C20—C19—C24119.3 (2)
C13—C4—O2110.2 (2)C20—C19—C18121.8 (2)
C4—C5—C6119.2 (2)C24—C19—C18118.8 (2)
C4—C5—H5120.4C21—C20—C19118.9 (2)
C6—C5—H5120.4C21—C20—H20120.5
C11—C6—C7119.0 (2)C19—C20—H20120.5
C11—C6—C5118.7 (2)C20—C21—C22123.3 (2)
C7—C6—C5122.2 (2)C20—C21—O1121.6 (2)
C8—C7—C6118.8 (2)C22—C21—O1114.8 (2)
C8—C7—H7120.6C23—C22—C21119.1 (2)
C6—C7—H7120.6C23—C22—H22120.4
C7—C8—C9122.7 (2)C21—C22—H22120.4
C7—C8—O3126.7 (2)C22—C23—C24120.5 (3)
C9—C8—O3110.3 (2)C22—C23—H23119.8
C10—C9—C8119.3 (2)C24—C23—H23119.8
C10—C9—H9120.3C19—C24—C25119.2 (2)
C8—C9—H9120.3C19—C24—C23118.9 (2)
C9—C10—C11121.1 (3)C25—C24—C23121.8 (2)
C9—C10—H10119.5C26—C25—C24120.8 (3)
C11—C10—H10119.5C26—C25—H25119.6
C10—C11—C12121.7 (2)C24—C25—H25119.6
C10—C11—C6119.1 (2)C25—C26—C17118.9 (2)
C12—C11—C6119.2 (2)C25—C26—H26120.5
C13—C12—C11120.9 (3)C17—C26—H26120.5
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Hg2+ recognition by triptycene-derived heteracalixarenes: selectivity tuned by bridging heteroatoms and macrocyclic cavity.

Authors:  Shu-Zhen Hu; Chuan-Feng Chen
Journal:  Org Biomol Chem       Date:  2011-07-07       Impact factor: 3.876

3.  Synthesis, structure, and functionalization of homo heterocalix[2]arene[2]triazines: versatile conformation and cavity structures regulated by the bridging elements.

Authors:  Yin Chen; De-Xian Wang; Zhi-Tang Huang; Mei-Xiang Wang
Journal:  J Org Chem       Date:  2010-06-04       Impact factor: 4.354

4.  Synthesis of inherently chiral azacalix[4]arenes and diazadioxacalix[4]arenes.

Authors:  Jeffrey L Katz; Brittany A Tschaen
Journal:  Org Lett       Date:  2010-10-01       Impact factor: 6.005

5.  A general and high yielding fragment coupling synthesis of heteroatom-bridged calixarenes and the unprecedented examples of calixarene cavity fine-tuned by bridging heteroatoms.

Authors:  Mei-Xiang Wang; Hai-Bo Yang
Journal:  J Am Chem Soc       Date:  2004-12-01       Impact factor: 15.419

6.  Synthesis and structure of upper-rim 1,3-alternate tetraoxacalix[2]arene[2]triazine azacrowns and change of cavity in response to fluoride anion.

Authors:  Bao-Yong Hou; De-Xian Wang; Hai-Bo Yang; Qi-Yu Zheng; Mei-Xiang Wang
Journal:  J Org Chem       Date:  2007-06-05       Impact factor: 4.354

  6 in total

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